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Gene Expression Data
Assay Details
Assay
Reference: J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
Assay type: RNA in situ
MGI Accession ID: MGI:4826414
Gene symbol: Mmp9
Gene name: matrix metallopeptidase 9
Probe: MGC clone 54599
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Assay notes: Cryosections of fresh frozen material were fixed in 4% paraformaldehyde for 20 min. before further processing. A tyramide-biotin/streptavidin amplification step was included in the in situ hybridization procedure.
Results
Specimen euxassay_004648_01: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: cranium Strong Regionally restricted euxassay_004648_01
TS23: rib Moderate Single cells euxassay_004648_01 periosteum
TS23: upper arm mesenchyme Strong Regionally restricted euxassay_004648_01
TS23: elbow mesenchyme Strong Regionally restricted euxassay_004648_01
TS23: upper leg mesenchyme Strong Regionally restricted euxassay_004648_01
TS23: lower leg mesenchyme Strong Regionally restricted euxassay_004648_01
TS23: brain Strong Regionally restricted euxassay_004648_01
Specimen euxassay_004648_02: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: cranium Strong Regionally restricted euxassay_004648_02
TS23: rib Moderate Single cells euxassay_004648_02 periosteum
TS23: upper arm mesenchyme Moderate Regionally restricted euxassay_004648_02
TS23: upper leg mesenchyme Moderate Regionally restricted euxassay_004648_02
TS23: brain Strong Regionally restricted euxassay_004648_02
Specimen euxassay_004648_03: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: cranium Strong Regionally restricted euxassay_004648_03
TS23: rib Strong Single cells euxassay_004648_03 periosteum
TS23: upper arm mesenchyme Strong Regionally restricted euxassay_004648_03
TS23: upper leg mesenchyme Strong Regionally restricted euxassay_004648_03
TS23: hand mesenchyme Strong Regionally restricted euxassay_004648_03
TS23: scapula Strong Single cells euxassay_004648_03
TS23: brain Strong Regionally restricted euxassay_004648_03
Specimen euxassay_004648_04: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: cranium Strong Regionally restricted euxassay_004648_04
TS23: rib Strong Single cells euxassay_004648_04 periosteum
TS23: upper leg mesenchyme Strong Regionally restricted euxassay_004648_04
TS23: upper arm mesenchyme Strong Regionally restricted euxassay_004648_04
TS23: maxilla Strong Single cells euxassay_004648_04
TS23: mandible Strong Single cells euxassay_004648_04
TS23: scapula Strong Single cells euxassay_004648_04
TS23: brain Strong Regionally restricted euxassay_004648_04
Specimen euxassay_004648_05: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: cranium Strong Regionally restricted euxassay_004648_05
TS23: rib Strong Single cells euxassay_004648_05 periosteum
TS23: mandible Strong Single cells euxassay_004648_05
TS23: maxilla Strong Single cells euxassay_004648_05
TS23: scapula Strong Single cells euxassay_004648_05
TS23: brain Strong Regionally restricted euxassay_004648_05
Specimen euxassay_004648_06: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: cranium Strong Regionally restricted euxassay_004648_06
TS23: rib Strong Single cells euxassay_004648_06 periosteum
TS23: maxilla Strong Single cells euxassay_004648_06
TS23: mandible Strong Single cells euxassay_004648_06
TS23: clavicle Strong Single cells euxassay_004648_06
TS23: brain Strong Regionally restricted euxassay_004648_06
Specimen euxassay_004648_07: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: cranium Strong Regionally restricted euxassay_004648_07
TS23: rib Strong Single cells euxassay_004648_07 periosteum
TS23: maxilla Strong Single cells euxassay_004648_07
TS23: mandible Strong Single cells euxassay_004648_07
TS23: clavicle Strong Single cells euxassay_004648_07
TS23: brain Strong Regionally restricted euxassay_004648_07
Specimen euxassay_004648_08: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: cranium Strong Regionally restricted euxassay_004648_08
TS23: rib Strong Single cells euxassay_004648_08 periosteum
TS23: mandible Strong Single cells euxassay_004648_08
TS23: maxilla Strong Single cells euxassay_004648_08
TS23: clavicle Strong Single cells euxassay_004648_08
TS23: turbinate bone primordium Strong Regionally restricted euxassay_004648_08
TS23: brain Strong Regionally restricted euxassay_004648_08
Specimen euxassay_004648_09: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: rib Strong Single cells euxassay_004648_09 periosteum
TS23: maxilla Strong Single cells euxassay_004648_09
TS23: mandible Strong Single cells euxassay_004648_09
TS23: clavicle Strong Single cells euxassay_004648_09
TS23: turbinate bone primordium Strong Regionally restricted euxassay_004648_09
TS23: brain Strong Regionally restricted euxassay_004648_09
TS23: spinal cord Strong Regionally restricted euxassay_004648_09
Specimen euxassay_004648_10: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: rib Strong Single cells euxassay_004648_10 periosteum
TS23: maxilla Strong Single cells euxassay_004648_10
TS23: mandible Strong Single cells euxassay_004648_10
TS23: bladder wall Weak Regionally restricted euxassay_004648_10
TS23: nasal septum Strong Regionally restricted euxassay_004648_10
TS23: turbinate bone primordium Strong Regionally restricted euxassay_004648_10
TS23: brain Strong Regionally restricted euxassay_004648_10
TS23: spinal cord Strong Regionally restricted euxassay_004648_10
Specimen euxassay_004648_11: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: rib Strong Single cells euxassay_004648_11 periosteum
TS23: upper jaw incisor Strong Single cells euxassay_004648_11
TS23: lower jaw incisor Strong Single cells euxassay_004648_11
TS23: bladder wall Weak Regionally restricted euxassay_004648_11
TS23: nasal septum Strong Regionally restricted euxassay_004648_11
TS23: brain Strong Regionally restricted euxassay_004648_11
TS23: spinal cord Strong Regionally restricted euxassay_004648_11
Specimen euxassay_004648_12: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: upper jaw incisor Strong Single cells euxassay_004648_12
TS23: lower jaw incisor Strong Single cells euxassay_004648_12
TS23: bladder wall Weak Regionally restricted euxassay_004648_12
TS23: nasal septum Strong Regionally restricted euxassay_004648_12
TS23: spinal cord Strong Regionally restricted euxassay_004648_12
TS23: brain Strong Regionally restricted euxassay_004648_12
Specimen euxassay_004648_13: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: upper jaw incisor Strong Single cells euxassay_004648_13
TS23: lower jaw incisor Strong Single cells euxassay_004648_13
TS23: bladder wall Moderate Regionally restricted euxassay_004648_13
TS23: nasal septum Strong Regionally restricted euxassay_004648_13
TS23: spinal cord Strong Regionally restricted euxassay_004648_13
TS23: brain Strong Regionally restricted euxassay_004648_13
Specimen euxassay_004648_14: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: upper jaw incisor Strong Single cells euxassay_004648_14
TS23: bladder wall Weak Regionally restricted euxassay_004648_14
TS23: nasal septum Strong Regionally restricted euxassay_004648_14
TS23: spinal cord Strong Regionally restricted euxassay_004648_14
TS23: brain Strong Regionally restricted euxassay_004648_14
Specimen euxassay_004648_15: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: rib Strong Single cells euxassay_004648_15 periosteum
TS23: upper jaw incisor Strong Single cells euxassay_004648_15
TS23: lower jaw incisor Strong Single cells euxassay_004648_15
TS23: nasal septum Strong Regionally restricted euxassay_004648_15
TS23: spinal cord Strong Regionally restricted euxassay_004648_15
TS23: brain Strong Regionally restricted euxassay_004648_15
Specimen euxassay_004648_16: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: rib Strong Single cells euxassay_004648_16 periosteum
TS23: lower jaw incisor Strong Single cells euxassay_004648_16
TS23: upper jaw incisor Strong Single cells euxassay_004648_16
TS23: turbinate bone primordium Strong Regionally restricted euxassay_004648_16
TS23: nasal septum Strong Regionally restricted euxassay_004648_16
TS23: spinal cord Strong Regionally restricted euxassay_004648_16
TS23: brain Strong Regionally restricted euxassay_004648_16
Specimen euxassay_004648_17: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: rib Strong Single cells euxassay_004648_17 periosteum
TS23: mandible Strong Single cells euxassay_004648_17
TS23: maxilla Strong Single cells euxassay_004648_17
TS23: clavicle Strong Single cells euxassay_004648_17
TS23: turbinate bone primordium Strong Regionally restricted euxassay_004648_17
TS23: spinal cord Strong Regionally restricted euxassay_004648_17
TS23: brain Strong Regionally restricted euxassay_004648_17
Specimen euxassay_004648_18: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: rib Strong Single cells euxassay_004648_18 periosteum
TS23: upper leg mesenchyme Strong Regionally restricted euxassay_004648_18
TS23: maxilla Strong Single cells euxassay_004648_18
TS23: mandible Strong Single cells euxassay_004648_18
TS23: clavicle Strong Single cells euxassay_004648_18
TS23: turbinate bone primordium Strong Regionally restricted euxassay_004648_18
TS23: brain Strong Regionally restricted euxassay_004648_18
Specimen euxassay_004648_19: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: cranium Strong Regionally restricted euxassay_004648_19
TS23: rib Strong Single cells euxassay_004648_19 periosteum
TS23: upper leg mesenchyme Strong Regionally restricted euxassay_004648_19
TS23: mandible Strong Single cells euxassay_004648_19
TS23: maxilla Strong Single cells euxassay_004648_19
TS23: clavicle Strong Single cells euxassay_004648_19
TS23: turbinate bone primordium Strong Regionally restricted euxassay_004648_19
TS23: brain Strong Regionally restricted euxassay_004648_19
Specimen euxassay_004648_20: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: cranium Strong Regionally restricted euxassay_004648_20
TS23: rib Strong Single cells euxassay_004648_20 periosteum
TS23: upper leg mesenchyme Strong Regionally restricted euxassay_004648_20
TS23: mandible Strong Single cells euxassay_004648_20
TS23: maxilla Strong Single cells euxassay_004648_20
TS23: brain Strong Regionally restricted euxassay_004648_20
Specimen euxassay_004648_21: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: cranium Strong Regionally restricted euxassay_004648_21
TS23: rib Strong Single cells euxassay_004648_21 periosteum
TS23: upper leg mesenchyme Strong Regionally restricted euxassay_004648_21
TS23: lower leg mesenchyme Strong Regionally restricted euxassay_004648_21
TS23: mandible Strong Single cells euxassay_004648_21
TS23: maxilla Strong Single cells euxassay_004648_21
TS23: scapula Strong Single cells euxassay_004648_21
TS23: brain Strong Regionally restricted euxassay_004648_21
Specimen euxassay_004648_22: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: cranium Strong Regionally restricted euxassay_004648_22
TS23: rib Strong Single cells euxassay_004648_22 periosteum
TS23: lower leg mesenchyme Strong Regionally restricted euxassay_004648_22
TS23: upper arm mesenchyme Strong Regionally restricted euxassay_004648_22
TS23: maxilla Strong Single cells euxassay_004648_22
TS23: mandible Strong Single cells euxassay_004648_22
TS23: scapula Strong Single cells euxassay_004648_22
TS23: brain Strong Regionally restricted euxassay_004648_22
Specimen euxassay_004648_23: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: cranium Moderate Regionally restricted euxassay_004648_23
TS23: rib Strong Single cells euxassay_004648_23 periosteum
TS23: lower leg mesenchyme Strong Regionally restricted euxassay_004648_23
TS23: upper arm mesenchyme Strong Regionally restricted euxassay_004648_23
TS23: hand mesenchyme Strong Regionally restricted euxassay_004648_23
TS23: mandible Strong Single cells euxassay_004648_23
TS23: maxilla Strong Single cells euxassay_004648_23
TS23: scapula Strong Single cells euxassay_004648_23
TS23: brain Strong Regionally restricted euxassay_004648_23
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
03/25/2025
MGI 6.24 		The Jackson Laboratory