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Gene Expression Data
Assay Details
Assay
Reference: J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
Assay type: RNA in situ
MGI Accession ID: MGI:4825677
Gene symbol: Jam3
Gene name: junction adhesion molecule 3
Probe: IMAGE clone 1121556
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Assay notes: Cryosections of fresh frozen material were fixed in 4% paraformaldehyde for 20 min. before further processing. A tyramide-biotin/streptavidin amplification step was included in the in situ hybridization procedure.
Results
Specimen euxassay_000180_01: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: vertebral axis musculature Moderate Regionally restricted euxassay_000180_01
TS23: limb Moderate Regionally restricted euxassay_000180_01
TS23: limb musculature Present euxassay_000180_01
TS23: telencephalon ventricular layer Moderate Regionally restricted euxassay_000180_01
TS23: head mesenchyme Moderate Regionally restricted euxassay_000180_01
TS23: chondrocranium Weak Regionally restricted euxassay_000180_01
Specimen euxassay_000180_02: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: vertebral axis musculature Moderate Regionally restricted euxassay_000180_02
TS23: limb Moderate Regionally restricted euxassay_000180_02
TS23: limb musculature Present euxassay_000180_02
TS23: telencephalon ventricular layer Moderate Regionally restricted euxassay_000180_02
TS23: head mesenchyme Moderate Regionally restricted euxassay_000180_02
TS23: chondrocranium Weak Regionally restricted euxassay_000180_02
Specimen euxassay_000180_03: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: vertebral axis musculature Moderate Regionally restricted euxassay_000180_03
TS23: limb Moderate Regionally restricted euxassay_000180_03
TS23: limb musculature Present euxassay_000180_03
TS23: telencephalon ventricular layer Moderate Regionally restricted euxassay_000180_03
TS23: metencephalon rest of alar plate ventricular layer Moderate Regionally restricted euxassay_000180_03
TS23: diaphragm Moderate Regionally restricted euxassay_000180_03
TS23: head mesenchyme Moderate Regionally restricted euxassay_000180_03
TS23: chondrocranium Weak Regionally restricted euxassay_000180_03
Specimen euxassay_000180_04: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: vertebral axis musculature Moderate Regionally restricted euxassay_000180_04
TS23: limb Moderate Regionally restricted euxassay_000180_04
TS23: limb musculature Present euxassay_000180_04
TS23: telencephalon ventricular layer Moderate Regionally restricted euxassay_000180_04
TS23: metencephalon rest of alar plate ventricular layer Moderate Regionally restricted euxassay_000180_04
TS23: diaphragm Moderate Regionally restricted euxassay_000180_04
TS23: head mesenchyme Moderate Regionally restricted euxassay_000180_04
TS23: chondrocranium Weak Regionally restricted euxassay_000180_04
Specimen euxassay_000180_05: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: vertebral axis musculature Moderate Regionally restricted euxassay_000180_05
TS23: limb Moderate Regionally restricted euxassay_000180_05
TS23: limb musculature Present euxassay_000180_05
TS23: telencephalon ventricular layer Moderate Regionally restricted euxassay_000180_05
TS23: metencephalon rest of alar plate ventricular layer Moderate Regionally restricted euxassay_000180_05
TS23: diaphragm Moderate Regionally restricted euxassay_000180_05
TS23: head mesenchyme Moderate Regionally restricted euxassay_000180_05
TS23: chondrocranium Weak Regionally restricted euxassay_000180_05
Specimen euxassay_000180_06: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: vertebral axis musculature Moderate Regionally restricted euxassay_000180_06
TS23: limb Moderate Regionally restricted euxassay_000180_06
TS23: limb musculature Present euxassay_000180_06
TS23: telencephalon ventricular layer Moderate Regionally restricted euxassay_000180_06
TS23: metencephalon rest of alar plate ventricular layer Moderate Regionally restricted euxassay_000180_06
TS23: diaphragm Moderate Regionally restricted euxassay_000180_06
TS23: head mesenchyme Moderate Regionally restricted euxassay_000180_06
TS23: chondrocranium Weak Regionally restricted euxassay_000180_06
Specimen euxassay_000180_07: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: vertebral axis musculature Moderate Regionally restricted euxassay_000180_07
TS23: limb Moderate Regionally restricted euxassay_000180_07
TS23: limb musculature Present euxassay_000180_07
TS23: telencephalon ventricular layer Moderate Regionally restricted euxassay_000180_07
TS23: metencephalon rest of alar plate ventricular layer Moderate Regionally restricted euxassay_000180_07
TS23: diaphragm Moderate Regionally restricted euxassay_000180_07
TS23: head mesenchyme Moderate Regionally restricted euxassay_000180_07
Specimen euxassay_000180_08: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: vertebral axis musculature Moderate Regionally restricted euxassay_000180_08
TS23: telencephalon ventricular layer Moderate Regionally restricted euxassay_000180_08
TS23: metencephalon rest of alar plate ventricular layer Moderate Regionally restricted euxassay_000180_08
TS23: midbrain ventricular layer Weak Regionally restricted euxassay_000180_08
TS23: midbrain mantle layer Weak Regionally restricted euxassay_000180_08
TS23: diaphragm Moderate Regionally restricted euxassay_000180_08
TS23: head mesenchyme Moderate Regionally restricted euxassay_000180_08
Specimen euxassay_000180_09: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: vertebral axis musculature Moderate Regionally restricted euxassay_000180_09
TS23: telencephalon ventricular layer Moderate Regionally restricted euxassay_000180_09
TS23: metencephalon rest of alar plate ventricular layer Moderate Regionally restricted euxassay_000180_09
TS23: pons ventricular layer Moderate Regionally restricted euxassay_000180_09
TS23: medulla oblongata basal plate ventricular layer Moderate Regionally restricted euxassay_000180_09
TS23: medulla oblongata alar plate ventricular layer Moderate Regionally restricted euxassay_000180_09
TS23: midbrain ventricular layer Weak Regionally restricted euxassay_000180_09
TS23: midbrain mantle layer Weak Regionally restricted euxassay_000180_09
TS23: diaphragm Moderate Regionally restricted euxassay_000180_09
TS23: head mesenchyme Moderate Regionally restricted euxassay_000180_09
Specimen euxassay_000180_10: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: vertebral axis musculature Moderate Regionally restricted euxassay_000180_10
TS23: telencephalon ventricular layer Moderate Regionally restricted euxassay_000180_10
TS23: pons ventricular layer Moderate Regionally restricted euxassay_000180_10
TS23: metencephalon rest of alar plate ventricular layer Moderate Regionally restricted euxassay_000180_10
TS23: medulla oblongata basal plate ventricular layer Moderate Regionally restricted euxassay_000180_10
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_000180_10
TS23: medulla oblongata alar plate ventricular layer Moderate Regionally restricted euxassay_000180_10
TS23: midbrain ventricular layer Weak Regionally restricted euxassay_000180_10
TS23: diaphragm Weak Regionally restricted euxassay_000180_10
TS23: head mesenchyme Moderate Regionally restricted euxassay_000180_10
Specimen euxassay_000180_11: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: vertebral axis musculature Moderate Regionally restricted euxassay_000180_11
TS23: olfactory cortex ventricular layer Moderate Regionally restricted euxassay_000180_11
TS23: telencephalon ventricular layer Moderate Regionally restricted euxassay_000180_11
TS23: pons ventricular layer Moderate Regionally restricted euxassay_000180_11
TS23: medulla oblongata basal plate ventricular layer Weak Regionally restricted euxassay_000180_11
TS23: medulla oblongata alar plate ventricular layer Weak Regionally restricted euxassay_000180_11
TS23: midbrain ventricular layer Weak Regionally restricted euxassay_000180_11
TS23: diencephalon lateral wall ventricular layer Moderate Regionally restricted euxassay_000180_11
TS23: hypothalamus ventricular layer Moderate Regionally restricted euxassay_000180_11
TS23: diaphragm Weak Regionally restricted euxassay_000180_11
TS23: head mesenchyme Moderate Regionally restricted euxassay_000180_11
Specimen euxassay_000180_12: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: vertebral axis musculature Moderate Regionally restricted euxassay_000180_12
TS23: telencephalon ventricular layer Moderate Regionally restricted euxassay_000180_12
TS23: pons ventricular layer Moderate Regionally restricted euxassay_000180_12
TS23: medulla oblongata basal plate ventricular layer Moderate Regionally restricted euxassay_000180_12
TS23: midbrain ventricular layer Weak Regionally restricted euxassay_000180_12
TS23: diencephalon lateral wall ventricular layer Moderate Regionally restricted euxassay_000180_12
TS23: hypothalamus ventricular layer Moderate Regionally restricted euxassay_000180_12
TS23: diaphragm Weak Regionally restricted euxassay_000180_12
TS23: head mesenchyme Moderate Regionally restricted euxassay_000180_12
TS23: tongue Weak Regionally restricted euxassay_000180_12
Specimen euxassay_000180_13: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: vertebral axis musculature Moderate Regionally restricted euxassay_000180_13
TS23: telencephalon ventricular layer Moderate Regionally restricted euxassay_000180_13
TS23: pons ventricular layer Moderate Regionally restricted euxassay_000180_13
TS23: medulla oblongata basal plate ventricular layer Moderate Regionally restricted euxassay_000180_13
TS23: medulla oblongata alar plate ventricular layer Moderate Regionally restricted euxassay_000180_13
TS23: spinal cord mantle layer Moderate Regionally restricted euxassay_000180_13
TS23: midbrain ventricular layer Weak Regionally restricted euxassay_000180_13
TS23: hypothalamus ventricular layer Moderate Regionally restricted euxassay_000180_13
TS23: diencephalon lateral wall ventricular layer Moderate Regionally restricted euxassay_000180_13
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_000180_13
TS23: tongue Weak Regionally restricted euxassay_000180_13
TS23: tail mesenchyme Moderate Regionally restricted euxassay_000180_13
Specimen euxassay_000180_14: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: vertebral axis musculature Moderate Regionally restricted euxassay_000180_14
TS23: telencephalon ventricular layer Moderate Regionally restricted euxassay_000180_14
TS23: metencephalon rest of alar plate ventricular layer Weak Regionally restricted euxassay_000180_14
TS23: medulla oblongata basal plate ventricular layer Weak Regionally restricted euxassay_000180_14
TS23: medulla oblongata alar plate ventricular layer Weak Regionally restricted euxassay_000180_14
TS23: spinal cord mantle layer Moderate Regionally restricted euxassay_000180_14
TS23: midbrain ventricular layer Weak Regionally restricted euxassay_000180_14
TS23: hypothalamus ventricular layer Moderate Regionally restricted euxassay_000180_14
TS23: diencephalon lateral wall ventricular layer Moderate Regionally restricted euxassay_000180_14
TS23: head mesenchyme Moderate Regionally restricted euxassay_000180_14
TS23: tongue Moderate Regionally restricted euxassay_000180_14
TS23: tail mesenchyme Moderate Regionally restricted euxassay_000180_14
Specimen euxassay_000180_15: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: vertebral axis musculature Moderate Regionally restricted euxassay_000180_15
TS23: telencephalon ventricular layer Moderate Regionally restricted euxassay_000180_15
TS23: medulla oblongata basal plate ventricular layer Weak Regionally restricted euxassay_000180_15
TS23: medulla oblongata alar plate ventricular layer Weak Regionally restricted euxassay_000180_15
TS23: spinal cord mantle layer Moderate Regionally restricted euxassay_000180_15
TS23: midbrain ventricular layer Weak Regionally restricted euxassay_000180_15
TS23: hypothalamus ventricular layer Weak Regionally restricted euxassay_000180_15
TS23: head mesenchyme Moderate Regionally restricted euxassay_000180_15
TS23: tongue Moderate Regionally restricted euxassay_000180_15
TS23: tail mesenchyme Moderate Regionally restricted euxassay_000180_15
Specimen euxassay_000180_16: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: vertebral axis musculature Moderate Regionally restricted euxassay_000180_16
TS23: telencephalon ventricular layer Moderate Regionally restricted euxassay_000180_16
TS23: olfactory cortex ventricular layer Moderate Regionally restricted euxassay_000180_16
TS23: metencephalon rest of alar plate ventricular layer Weak Regionally restricted euxassay_000180_16
TS23: medulla oblongata basal plate ventricular layer Weak Regionally restricted euxassay_000180_16
TS23: medulla oblongata alar plate ventricular layer Weak Regionally restricted euxassay_000180_16
TS23: medulla oblongata basal plate mantle layer Weak Regionally restricted euxassay_000180_16
TS23: midbrain ventricular layer Weak Regionally restricted euxassay_000180_16
TS23: head mesenchyme Moderate Regionally restricted euxassay_000180_16
TS23: tail mesenchyme Moderate Regionally restricted euxassay_000180_16
Specimen euxassay_000180_17: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: vertebral axis musculature Moderate Regionally restricted euxassay_000180_17
TS23: olfactory cortex ventricular layer Moderate Regionally restricted euxassay_000180_17
TS23: telencephalon ventricular layer Moderate Regionally restricted euxassay_000180_17
TS23: metencephalon rest of alar plate ventricular layer Weak Regionally restricted euxassay_000180_17
TS23: medulla oblongata alar plate ventricular layer Weak Regionally restricted euxassay_000180_17
TS23: medulla oblongata basal plate mantle layer Weak Regionally restricted euxassay_000180_17
TS23: medulla oblongata basal plate ventricular layer Weak Regionally restricted euxassay_000180_17
TS23: midbrain mantle layer Weak Regionally restricted euxassay_000180_17
TS23: head mesenchyme Moderate Regionally restricted euxassay_000180_17
TS23: tail mesenchyme Moderate Regionally restricted euxassay_000180_17
Specimen euxassay_000180_18: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: vertebral axis musculature Moderate Regionally restricted euxassay_000180_18
TS23: olfactory cortex ventricular layer Moderate Regionally restricted euxassay_000180_18
TS23: telencephalon ventricular layer Moderate Regionally restricted euxassay_000180_18
TS23: metencephalon rest of alar plate ventricular layer Moderate Regionally restricted euxassay_000180_18
TS23: midbrain mantle layer Weak Regionally restricted euxassay_000180_18
TS23: head mesenchyme Moderate Regionally restricted euxassay_000180_18
TS23: tail mesenchyme Moderate Regionally restricted euxassay_000180_18
Specimen euxassay_000180_19: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: cerebral cortex Strong Uniform euxassay_000180_19
TS23: vertebral axis musculature Moderate Regionally restricted euxassay_000180_19
TS23: telencephalon ventricular layer Moderate Regionally restricted euxassay_000180_19
TS23: metencephalon rest of alar plate ventricular layer Moderate Regionally restricted euxassay_000180_19
TS23: diaphragm Weak Regionally restricted euxassay_000180_19
TS23: head mesenchyme Moderate Regionally restricted euxassay_000180_19
Specimen euxassay_000180_20: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: vertebral axis musculature Moderate Regionally restricted euxassay_000180_20
TS23: telencephalon ventricular layer Moderate Regionally restricted euxassay_000180_20
TS23: metencephalon rest of alar plate ventricular layer Moderate Regionally restricted euxassay_000180_20
TS23: diaphragm Moderate Regionally restricted euxassay_000180_20
TS23: head mesenchyme Moderate Regionally restricted euxassay_000180_20
Specimen euxassay_000180_21: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: vertebral axis musculature Moderate Regionally restricted euxassay_000180_21
TS23: telencephalon ventricular layer Moderate Regionally restricted euxassay_000180_21
TS23: metencephalon rest of alar plate ventricular layer Moderate Regionally restricted euxassay_000180_21
TS23: diaphragm Moderate Regionally restricted euxassay_000180_21
TS23: head mesenchyme Moderate Regionally restricted euxassay_000180_21
TS23: chondrocranium Weak Regionally restricted euxassay_000180_21
Specimen euxassay_000180_22: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: vertebral axis musculature Moderate Regionally restricted euxassay_000180_22
TS23: limb Moderate Regionally restricted euxassay_000180_22
TS23: limb musculature Present euxassay_000180_22
TS23: telencephalon ventricular layer Moderate Regionally restricted euxassay_000180_22
TS23: metencephalon rest of alar plate ventricular layer Moderate Regionally restricted euxassay_000180_22
TS23: diaphragm Moderate Regionally restricted euxassay_000180_22
TS23: head mesenchyme Moderate Regionally restricted euxassay_000180_22
TS23: chondrocranium Weak Regionally restricted euxassay_000180_22
Specimen euxassay_000180_23: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: vertebral axis musculature Moderate Regionally restricted euxassay_000180_23
TS23: limb Moderate Regionally restricted euxassay_000180_23
TS23: limb musculature Present euxassay_000180_23
TS23: telencephalon ventricular layer Moderate Regionally restricted euxassay_000180_23
TS23: diaphragm Moderate Regionally restricted euxassay_000180_23
TS23: head mesenchyme Moderate Regionally restricted euxassay_000180_23
TS23: chondrocranium Weak Regionally restricted euxassay_000180_23
Specimen euxassay_000180_24: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: vertebral axis musculature Moderate Regionally restricted euxassay_000180_24
TS23: limb Moderate Regionally restricted euxassay_000180_24
TS23: limb musculature Present euxassay_000180_24
TS23: diaphragm Moderate Regionally restricted euxassay_000180_24
TS23: head mesenchyme Moderate Regionally restricted euxassay_000180_24
TS23: tongue Weak Regionally restricted euxassay_000180_24
TS23: chondrocranium Weak Regionally restricted euxassay_000180_24
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
05/14/2024
MGI 6.23 		The Jackson Laboratory