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Gene Expression Data
Assay Details
Assay
Reference: J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
Assay type: RNA in situ
MGI Accession ID: MGI:4825624
Gene symbol: Irx3
Gene name: Iroquois related homeobox 3
Probe: T55089
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Assay notes: Cryosections of fresh frozen material were fixed in 4% paraformaldehyde for 20 min. before further processing. A tyramide-biotin/streptavidin amplification step was included in the in situ hybridization procedure.
Results
Specimen euxassay_019561_01: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: neural retina Strong Regionally restricted euxassay_019561_01
Specimen euxassay_019561_02: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: neural retina Strong Regionally restricted euxassay_019561_02
TS23: stomach Weak Regionally restricted euxassay_019561_02
Specimen euxassay_019561_03: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: neural retina Strong Regionally restricted euxassay_019561_03
TS23: stomach Weak Regionally restricted euxassay_019561_03
Specimen euxassay_019561_04: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: stomach Weak Regionally restricted euxassay_019561_04
TS23: interdigital region between hindlimb digits 1 and 2 Moderate Regionally restricted euxassay_019561_04
Specimen euxassay_019561_05: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: lung Strong Regionally restricted euxassay_019561_05
TS23: saccule Strong Regionally restricted euxassay_019561_05
TS23: stomach Moderate Regionally restricted euxassay_019561_05
TS23: interdigital region between hindlimb digits 1 and 2 Moderate Regionally restricted euxassay_019561_05
TS23: interdigital region between hindlimb digits 2 and 3 Moderate Regionally restricted euxassay_019561_05
TS23: interdigital region between hindlimb digits 3 and 4 Moderate Regionally restricted euxassay_019561_05
Specimen euxassay_019561_06: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: lung Strong Regionally restricted euxassay_019561_06
TS23: saccule Strong Regionally restricted euxassay_019561_06
TS23: ovary Strong Regionally restricted euxassay_019561_06
TS23: stomach Moderate Regionally restricted euxassay_019561_06
TS23: midbrain ventricular layer Strong Regionally restricted euxassay_019561_06
TS23: pons mantle layer Moderate Regionally restricted euxassay_019561_06
TS23: vibrissa Weak Regionally restricted euxassay_019561_06
Specimen euxassay_019561_07: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: lung Strong Regionally restricted euxassay_019561_07
TS23: saccule Strong Regionally restricted euxassay_019561_07
TS23: metanephros Weak Regionally restricted euxassay_019561_07
TS23: ovary Strong Regionally restricted euxassay_019561_07
TS23: midbrain ventricular layer Strong Regionally restricted euxassay_019561_07
TS23: pons mantle layer Moderate Regionally restricted euxassay_019561_07
TS23: vibrissa Weak Regionally restricted euxassay_019561_07
Specimen euxassay_019561_08: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: lung Strong Regionally restricted euxassay_019561_08
TS23: metanephros Weak Regionally restricted euxassay_019561_08
TS23: midbrain ventricular layer Moderate Regionally restricted euxassay_019561_08
TS23: pons ventricular layer Weak Regionally restricted euxassay_019561_08
Specimen euxassay_019561_09: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: lung Strong Regionally restricted euxassay_019561_09
TS23: cochlea Strong Regionally restricted euxassay_019561_09
TS23: metanephros Moderate Regionally restricted euxassay_019561_09
TS23: midbrain ventricular layer Strong Regionally restricted euxassay_019561_09
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_019561_09
TS23: pons ventricular layer Moderate Regionally restricted euxassay_019561_09
Specimen euxassay_019561_10: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: lung Strong Regionally restricted euxassay_019561_10
TS23: metanephros Moderate Regionally restricted euxassay_019561_10
TS23: midbrain ventricular layer Strong Regionally restricted euxassay_019561_10
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_019561_10
TS23: pons ventricular layer Weak Regionally restricted euxassay_019561_10
Specimen euxassay_019561_11: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: lung Strong Regionally restricted euxassay_019561_11
TS23: midbrain ventricular layer Strong Regionally restricted euxassay_019561_11
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_019561_11
Specimen euxassay_019561_12: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: lung Strong Regionally restricted euxassay_019561_12
TS23: midbrain ventricular layer Strong Regionally restricted euxassay_019561_12
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_019561_12
Specimen euxassay_019561_13: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: lung Strong Regionally restricted euxassay_019561_13
TS23: midbrain ventricular layer Strong Regionally restricted euxassay_019561_13
TS23: diencephalon lateral wall mantle layer Strong Regionally restricted euxassay_019561_13
TS23: intermediate grey horn Moderate Regionally restricted euxassay_019561_13
Specimen euxassay_019561_14: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: lung Strong Regionally restricted euxassay_019561_14
TS23: midbrain ventricular layer Strong Regionally restricted euxassay_019561_14
TS23: diencephalon lateral wall mantle layer Strong Regionally restricted euxassay_019561_14
TS23: pons ventricular layer Weak Regionally restricted euxassay_019561_14
TS23: intermediate grey horn Strong Regionally restricted euxassay_019561_14
Specimen euxassay_019561_15: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: lung Strong Regionally restricted euxassay_019561_15
TS23: midbrain ventricular layer Strong Regionally restricted euxassay_019561_15
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_019561_15
TS23: pons ventricular layer Weak Regionally restricted euxassay_019561_15
TS23: intermediate grey horn Strong Regionally restricted euxassay_019561_15
Specimen euxassay_019561_16: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: lung Strong Regionally restricted euxassay_019561_16
TS23: midbrain ventricular layer Strong Regionally restricted euxassay_019561_16
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_019561_16
TS23: pons ventricular layer Weak Regionally restricted euxassay_019561_16
Specimen euxassay_019561_17: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: lung Strong Regionally restricted euxassay_019561_17
TS23: saccule Strong Regionally restricted euxassay_019561_17
TS23: metanephros Moderate Regionally restricted euxassay_019561_17
TS23: midbrain ventricular layer Strong Regionally restricted euxassay_019561_17
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_019561_17
TS23: pons ventricular layer Moderate Regionally restricted euxassay_019561_17
Specimen euxassay_019561_18: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: lung Strong Regionally restricted euxassay_019561_18
TS23: saccule Strong Regionally restricted euxassay_019561_18
TS23: metanephros Moderate Regionally restricted euxassay_019561_18
TS23: midbrain ventricular layer Strong Regionally restricted euxassay_019561_18
TS23: pons mantle layer Moderate Regionally restricted euxassay_019561_18
Specimen euxassay_019561_19: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: lung Strong Regionally restricted euxassay_019561_19
TS23: saccule Strong Regionally restricted euxassay_019561_19
TS23: metanephros Moderate Regionally restricted euxassay_019561_19
TS23: ovary Moderate Regionally restricted euxassay_019561_19
TS23: pons mantle layer Moderate Regionally restricted euxassay_019561_19
Specimen euxassay_019561_20: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: lung Strong Regionally restricted euxassay_019561_20
TS23: saccule Strong Regionally restricted euxassay_019561_20
TS23: ovary Moderate Regionally restricted euxassay_019561_20
Specimen euxassay_019561_21: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: lung Strong Regionally restricted euxassay_019561_21
TS23: saccule Strong Regionally restricted euxassay_019561_21
TS23: ovary Moderate Regionally restricted euxassay_019561_21
TS23: vibrissa Weak Regionally restricted euxassay_019561_21
Specimen euxassay_019561_22: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: lung Strong Regionally restricted euxassay_019561_22
TS23: interdigital region between hindlimb digits 4 and 5 Moderate Regionally restricted euxassay_019561_22
TS23: interdigital region between hindlimb digits 3 and 4 Moderate Regionally restricted euxassay_019561_22
TS23: vibrissa Weak Regionally restricted euxassay_019561_22
Specimen euxassay_019561_23: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: neural retina Strong Regionally restricted euxassay_019561_23
TS23: interdigital region between hindlimb digits 1 and 2 Moderate Regionally restricted euxassay_019561_23
TS23: interdigital region between hindlimb digits 2 and 3 Moderate Regionally restricted euxassay_019561_23
Specimen euxassay_019561_24: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: neural retina Strong Regionally restricted euxassay_019561_24
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
05/21/2024
MGI 6.23 		The Jackson Laboratory