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Gene Expression Data
Assay Details
Assay
Reference: J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
Assay type: RNA in situ
MGI Accession ID: MGI:4825623
Gene symbol: Irx2
Gene name: Iroquois homeobox 2
Probe: T30205
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Assay notes: Cryosections of fresh frozen material were fixed in 4% paraformaldehyde for 20 min. before further processing. A tyramide-biotin/streptavidin amplification step was included in the in situ hybridization procedure.
Results
Specimen euxassay_010444_01: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: epidermis Strong Regionally restricted euxassay_010444_01
TS23: neural retina Moderate Regionally restricted euxassay_010444_01
Specimen euxassay_010444_02: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: epidermis Strong Regionally restricted euxassay_010444_02
TS23: neural retina Moderate Regionally restricted euxassay_010444_02
Specimen euxassay_010444_03: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: epidermis Strong Regionally restricted euxassay_010444_03
TS23: vibrissa Strong Regionally restricted euxassay_010444_03
TS23: neural retina Moderate Regionally restricted euxassay_010444_03
TS23: lung Strong Regionally restricted euxassay_010444_03
TS23: hindlimb digit 1 metatarsal Weak Regionally restricted euxassay_010444_03
TS23: hindlimb digit 2 metatarsal Weak Regionally restricted euxassay_010444_03
TS23: hindlimb digit 3 metatarsal Weak Regionally restricted euxassay_010444_03
TS23: rest of cerebellum ventricular layer Strong Regionally restricted euxassay_010444_03
Specimen euxassay_010444_04: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: epidermis Strong Regionally restricted euxassay_010444_04
TS23: vibrissa Strong Regionally restricted euxassay_010444_04
TS23: lung Strong Regionally restricted euxassay_010444_04
TS23: hindlimb digit 1 metatarsal Weak Regionally restricted euxassay_010444_04
TS23: hindlimb digit 2 metatarsal Weak Regionally restricted euxassay_010444_04
TS23: hindlimb digit 3 metatarsal Weak Regionally restricted euxassay_010444_04
TS23: hindlimb digit 4 metatarsal Weak Regionally restricted euxassay_010444_04
TS23: hindlimb digit 5 metatarsal Weak Regionally restricted euxassay_010444_04
TS23: rest of cerebellum ventricular layer Strong Regionally restricted euxassay_010444_04
Specimen euxassay_010444_05: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: epidermis Strong Regionally restricted euxassay_010444_05
TS23: vibrissa Strong Regionally restricted euxassay_010444_05
TS23: lung Strong Regionally restricted euxassay_010444_05
TS23: hindlimb digit 5 metatarsal Weak Regionally restricted euxassay_010444_05
TS23: hindlimb digit 4 metatarsal Weak Regionally restricted euxassay_010444_05
TS23: rest of cerebellum ventricular layer Moderate Regionally restricted euxassay_010444_05
TS23: inner ear vestibular component Moderate Regionally restricted euxassay_010444_05
TS23: axial skeleton thoracic region Weak Regionally restricted euxassay_010444_05
Specimen euxassay_010444_06: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: epidermis Strong Regionally restricted euxassay_010444_06
TS23: vibrissa Strong Regionally restricted euxassay_010444_06
TS23: upper jaw molar Strong Regionally restricted euxassay_010444_06
TS23: lower jaw molar Strong Regionally restricted euxassay_010444_06
TS23: submandibular gland primordium Moderate Regionally restricted euxassay_010444_06
TS23: lung Strong Regionally restricted euxassay_010444_06
TS23: rest of cerebellum ventricular layer Moderate Regionally restricted euxassay_010444_06
TS23: rest of cerebellum mantle layer Moderate Regionally restricted euxassay_010444_06
TS23: pons ventricular layer Moderate Regionally restricted euxassay_010444_06
TS23: midbrain mantle layer Strong Regionally restricted euxassay_010444_06
TS23: inner ear vestibular component Moderate Regionally restricted euxassay_010444_06
TS23: axial skeleton thoracic region Weak Regionally restricted euxassay_010444_06
TS23: axial skeleton cervical region Weak Regionally restricted euxassay_010444_06
Specimen euxassay_010444_07: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: epidermis Strong Regionally restricted euxassay_010444_07
TS23: vibrissa Strong Regionally restricted euxassay_010444_07
TS23: submandibular gland primordium Moderate Regionally restricted euxassay_010444_07
TS23: lung Strong Regionally restricted euxassay_010444_07
TS23: rest of cerebellum ventricular layer Moderate Regionally restricted euxassay_010444_07
TS23: rest of cerebellum mantle layer Moderate Regionally restricted euxassay_010444_07
TS23: pons marginal layer Moderate Regionally restricted euxassay_010444_07
TS23: pons ventricular layer Moderate Regionally restricted euxassay_010444_07
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_010444_07
TS23: medulla oblongata basal plate ventricular layer Moderate Regionally restricted euxassay_010444_07
TS23: midbrain mantle layer Strong Regionally restricted euxassay_010444_07
TS23: inner ear vestibular component Moderate Regionally restricted euxassay_010444_07
TS23: metanephros Moderate Regionally restricted euxassay_010444_07
TS23: axial skeleton thoracic region Weak Regionally restricted euxassay_010444_07
TS23: axial skeleton cervical region Weak Regionally restricted euxassay_010444_07
Specimen euxassay_010444_08: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: epidermis Strong Regionally restricted euxassay_010444_08
TS23: vibrissa Strong Regionally restricted euxassay_010444_08
TS23: submandibular gland primordium Moderate Regionally restricted euxassay_010444_08
TS23: lung Strong Regionally restricted euxassay_010444_08
TS23: rest of cerebellum ventricular layer Moderate Regionally restricted euxassay_010444_08
TS23: rest of cerebellum mantle layer Moderate Regionally restricted euxassay_010444_08
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_010444_08
TS23: medulla oblongata basal plate ventricular layer Moderate Regionally restricted euxassay_010444_08
TS23: pons mantle layer Moderate Regionally restricted euxassay_010444_08
TS23: midbrain mantle layer Weak Regionally restricted euxassay_010444_08
TS23: inner ear vestibular component Moderate Regionally restricted euxassay_010444_08
TS23: axial skeleton lumbar region Weak Regionally restricted euxassay_010444_08
TS23: axial skeleton thoracic region Weak Regionally restricted euxassay_010444_08
Specimen euxassay_010444_09: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: epidermis Strong Regionally restricted euxassay_010444_09
TS23: submandibular gland primordium Moderate Regionally restricted euxassay_010444_09
TS23: lung Strong Regionally restricted euxassay_010444_09
TS23: pons ventricular layer Moderate Regionally restricted euxassay_010444_09
TS23: rest of cerebellum ventricular layer Moderate Regionally restricted euxassay_010444_09
TS23: medulla oblongata basal plate ventricular layer Moderate Regionally restricted euxassay_010444_09
TS23: pons mantle layer Moderate Regionally restricted euxassay_010444_09
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_010444_09
TS23: midbrain mantle layer Weak Regionally restricted euxassay_010444_09
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_010444_09
TS23: pretectum Present euxassay_010444_09
TS23: ventral grey horn Weak Regionally restricted euxassay_010444_09
TS23: axial skeleton thoracic region Weak Regionally restricted euxassay_010444_09
TS23: axial skeleton lumbar region Weak Regionally restricted euxassay_010444_09
Specimen euxassay_010444_10: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: epidermis Strong Regionally restricted euxassay_010444_10
TS23: upper jaw incisor Moderate Regionally restricted euxassay_010444_10
TS23: lower jaw incisor Moderate Regionally restricted euxassay_010444_10
TS23: lung Strong Regionally restricted euxassay_010444_10
TS23: pons ventricular layer Moderate Regionally restricted euxassay_010444_10
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_010444_10
TS23: rest of cerebellum ventricular layer Moderate Regionally restricted euxassay_010444_10
TS23: pons mantle layer Moderate Regionally restricted euxassay_010444_10
TS23: midbrain mantle layer Weak Regionally restricted euxassay_010444_10
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_010444_10
TS23: pretectum Present euxassay_010444_10
TS23: ventral grey horn Weak Regionally restricted euxassay_010444_10
TS23: axial skeleton sacral region Weak Regionally restricted euxassay_010444_10
Specimen euxassay_010444_11: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: epidermis Strong Regionally restricted euxassay_010444_11
TS23: upper jaw incisor Moderate Regionally restricted euxassay_010444_11
TS23: lower jaw incisor Moderate Regionally restricted euxassay_010444_11
TS23: lung Strong Regionally restricted euxassay_010444_11
TS23: pons mantle layer Moderate Regionally restricted euxassay_010444_11
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_010444_11
TS23: rest of cerebellum ventricular layer Moderate Regionally restricted euxassay_010444_11
TS23: midbrain mantle layer Weak Regionally restricted euxassay_010444_11
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_010444_11
TS23: pretectum Present euxassay_010444_11
TS23: ventral grey horn Weak Regionally restricted euxassay_010444_11
Specimen euxassay_010444_12: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: epidermis Strong Regionally restricted euxassay_010444_12
TS23: lung Strong Regionally restricted euxassay_010444_12
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_010444_12
TS23: rest of cerebellum ventricular layer Moderate Regionally restricted euxassay_010444_12
TS23: midbrain mantle layer Weak Regionally restricted euxassay_010444_12
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_010444_12
TS23: pretectum Present euxassay_010444_12
TS23: ventral grey horn Weak Regionally restricted euxassay_010444_12
Specimen euxassay_010444_13: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: epidermis Strong Regionally restricted euxassay_010444_13
TS23: lung Strong Regionally restricted euxassay_010444_13
TS23: pons ventricular layer Moderate Regionally restricted euxassay_010444_13
TS23: midbrain mantle layer Weak Regionally restricted euxassay_010444_13
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_010444_13
TS23: pretectum Present euxassay_010444_13
TS23: ventral grey horn Weak Regionally restricted euxassay_010444_13
TS23: urethra Strong Regionally restricted euxassay_010444_13 Originally this result was annotated to a male-specific term, but as the specimen was not sexed, it is likely the data annotator intended to use a non-gender specific term.
TS23: axial skeleton thoracic region Weak Regionally restricted euxassay_010444_13
Specimen euxassay_010444_14: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: epidermis Strong Regionally restricted euxassay_010444_14
TS23: upper jaw incisor Moderate Regionally restricted euxassay_010444_14
TS23: lower jaw incisor Moderate Regionally restricted euxassay_010444_14
TS23: lung Strong Regionally restricted euxassay_010444_14
TS23: pons ventricular layer Moderate Regionally restricted euxassay_010444_14
TS23: rest of cerebellum ventricular layer Moderate Regionally restricted euxassay_010444_14
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_010444_14
TS23: medulla oblongata basal plate ventricular layer Moderate Regionally restricted euxassay_010444_14
TS23: midbrain mantle layer Weak Regionally restricted euxassay_010444_14
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_010444_14
TS23: pretectum Present euxassay_010444_14
TS23: ventral grey horn Weak Regionally restricted euxassay_010444_14
TS23: axial skeleton lumbar region Weak Regionally restricted euxassay_010444_14
TS23: axial skeleton thoracic region Weak Regionally restricted euxassay_010444_14
Specimen euxassay_010444_15: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: epidermis Strong Regionally restricted euxassay_010444_15
TS23: upper jaw incisor Moderate Regionally restricted euxassay_010444_15
TS23: submandibular gland primordium Moderate Regionally restricted euxassay_010444_15
TS23: lung Strong Regionally restricted euxassay_010444_15
TS23: medulla oblongata basal plate ventricular layer Moderate Regionally restricted euxassay_010444_15
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_010444_15
TS23: pons mantle layer Moderate Regionally restricted euxassay_010444_15
TS23: pons ventricular layer Moderate Regionally restricted euxassay_010444_15
TS23: rest of cerebellum ventricular layer Moderate Regionally restricted euxassay_010444_15
TS23: midbrain mantle layer Weak Regionally restricted euxassay_010444_15
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_010444_15
TS23: pretectum Present euxassay_010444_15
TS23: axial skeleton sacral region Weak Regionally restricted euxassay_010444_15
TS23: axial skeleton thoracic region Weak Regionally restricted euxassay_010444_15
Specimen euxassay_010444_16: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: epidermis Strong Regionally restricted euxassay_010444_16
TS23: submandibular gland primordium Moderate Regionally restricted euxassay_010444_16
TS23: lung Strong Regionally restricted euxassay_010444_16
TS23: rest of cerebellum ventricular layer Moderate Regionally restricted euxassay_010444_16
TS23: pons ventricular layer Moderate Regionally restricted euxassay_010444_16
TS23: pons mantle layer Moderate Regionally restricted euxassay_010444_16
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_010444_16
TS23: midbrain mantle layer Strong Regionally restricted euxassay_010444_16
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_010444_16
TS23: pretectum Present euxassay_010444_16
TS23: inner ear vestibular component Moderate Regionally restricted euxassay_010444_16
TS23: axial skeleton cervical region Weak Regionally restricted euxassay_010444_16
TS23: axial skeleton thoracic region Weak Regionally restricted euxassay_010444_16
Specimen euxassay_010444_17: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: epidermis Strong Regionally restricted euxassay_010444_17
TS23: submandibular gland primordium Moderate Regionally restricted euxassay_010444_17
TS23: lung Strong Regionally restricted euxassay_010444_17
TS23: rest of cerebellum mantle layer Moderate Regionally restricted euxassay_010444_17
TS23: rest of cerebellum ventricular layer Moderate Regionally restricted euxassay_010444_17
TS23: pons ventricular layer Moderate Regionally restricted euxassay_010444_17
TS23: pons mantle layer Moderate Regionally restricted euxassay_010444_17
TS23: midbrain mantle layer Strong Regionally restricted euxassay_010444_17
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_010444_17
TS23: pretectum Present euxassay_010444_17
TS23: inner ear vestibular component Moderate Regionally restricted euxassay_010444_17
TS23: metanephros Moderate Regionally restricted euxassay_010444_17
Specimen euxassay_010444_18: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: epidermis Strong Regionally restricted euxassay_010444_18
TS23: upper jaw molar Moderate Regionally restricted euxassay_010444_18
TS23: lung Strong Regionally restricted euxassay_010444_18
TS23: pons ventricular layer Moderate Regionally restricted euxassay_010444_18
TS23: pons mantle layer Moderate Regionally restricted euxassay_010444_18
TS23: rest of cerebellum ventricular layer Moderate Regionally restricted euxassay_010444_18
TS23: rest of cerebellum mantle layer Moderate Regionally restricted euxassay_010444_18
TS23: midbrain mantle layer Strong Regionally restricted euxassay_010444_18
TS23: inner ear vestibular component Moderate Regionally restricted euxassay_010444_18
Specimen euxassay_010444_19: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: epidermis Strong Regionally restricted euxassay_010444_19
TS23: vibrissa Strong Regionally restricted euxassay_010444_19
TS23: upper jaw molar Strong Regionally restricted euxassay_010444_19
TS23: lower jaw molar Strong Regionally restricted euxassay_010444_19
TS23: lung Strong Regionally restricted euxassay_010444_19
TS23: rest of cerebellum ventricular layer Moderate Regionally restricted euxassay_010444_19
TS23: rest of cerebellum mantle layer Moderate Regionally restricted euxassay_010444_19
TS23: midbrain mantle layer Strong Regionally restricted euxassay_010444_19
TS23: inner ear vestibular component Moderate Regionally restricted euxassay_010444_19
Specimen euxassay_010444_20: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: vibrissa Strong Regionally restricted euxassay_010444_20
TS23: epidermis Strong Regionally restricted euxassay_010444_20
TS23: lung Strong Regionally restricted euxassay_010444_20
TS23: rest of cerebellum ventricular layer Strong Regionally restricted euxassay_010444_20
Specimen euxassay_010444_21: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: epidermis Strong Regionally restricted euxassay_010444_21
TS23: vibrissa Strong Regionally restricted euxassay_010444_21
TS23: lung Strong Regionally restricted euxassay_010444_21
TS23: hindlimb digit 1 metatarsal Weak Regionally restricted euxassay_010444_21
TS23: hindlimb digit 2 metatarsal Weak Regionally restricted euxassay_010444_21
TS23: hindlimb digit 3 metatarsal Weak Regionally restricted euxassay_010444_21
TS23: hindlimb digit 4 metatarsal Weak Regionally restricted euxassay_010444_21
TS23: hindlimb digit 5 metatarsal Weak Regionally restricted euxassay_010444_21
TS23: rest of cerebellum ventricular layer Moderate Regionally restricted euxassay_010444_21
Specimen euxassay_010444_22: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: vibrissa Strong Regionally restricted euxassay_010444_22
TS23: epidermis Strong Regionally restricted euxassay_010444_22
TS23: neural retina Moderate Regionally restricted euxassay_010444_22
TS23: hindlimb digit 1 metatarsal Weak Regionally restricted euxassay_010444_22
TS23: hindlimb digit 2 metatarsal Weak Regionally restricted euxassay_010444_22
TS23: hindlimb digit 3 metatarsal Weak Regionally restricted euxassay_010444_22
TS23: hindlimb digit 4 metatarsal Weak Regionally restricted euxassay_010444_22
Specimen euxassay_010444_23: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: epidermis Strong Regionally restricted euxassay_010444_23
TS23: neural retina Moderate Regionally restricted euxassay_010444_23
Specimen euxassay_010444_24: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: epidermis Strong Regionally restricted euxassay_010444_24
TS23: neural retina Weak Regionally restricted euxassay_010444_24
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
05/07/2024
MGI 6.23 		The Jackson Laboratory