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Gene Expression Data
Assay Details
Assay
Reference: J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
Assay type: RNA in situ
MGI Accession ID: MGI:4825454
Gene symbol: Hs3st3a1
Gene name: heparan sulfate (glucosamine) 3-O-sulfotransferase 3A1
Probe: IMAGE clone 6400013
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Assay notes: Cryosections of fresh frozen material were fixed in 4% paraformaldehyde for 20 min. before further processing. A tyramide-biotin/streptavidin amplification step was included in the in situ hybridization procedure.
Results
Specimen euxassay_004694_02: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: hand mesenchyme Moderate Regionally restricted euxassay_004694_02
Specimen euxassay_004694_03: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: mandible Moderate Regionally restricted euxassay_004694_03
TS23: maxilla Moderate Regionally restricted euxassay_004694_03
TS23: hand mesenchyme Moderate Regionally restricted euxassay_004694_03
Specimen euxassay_004694_04: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: maxilla Moderate Regionally restricted euxassay_004694_04
TS23: mandible Moderate Regionally restricted euxassay_004694_04
TS23: hand mesenchyme Moderate Regionally restricted euxassay_004694_04
Specimen euxassay_004694_05: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: mandible Moderate Regionally restricted euxassay_004694_05
TS23: humerus Moderate Regionally restricted euxassay_004694_05
TS23: hand mesenchyme Moderate Regionally restricted euxassay_004694_05
TS23: foot mesenchyme Moderate Regionally restricted euxassay_004694_05
Specimen euxassay_004694_06: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: mandible Moderate Regionally restricted euxassay_004694_06
TS23: foot mesenchyme Moderate Regionally restricted euxassay_004694_06
TS23: hand mesenchyme Moderate Regionally restricted euxassay_004694_06
TS23: humerus Moderate Regionally restricted euxassay_004694_06
TS23: renal cortex Strong Regionally restricted euxassay_004694_06
Specimen euxassay_004694_07: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: mandible Weak Regionally restricted euxassay_004694_07
TS23: foot mesenchyme Moderate Regionally restricted euxassay_004694_07
TS23: hindlimb digit 1 metatarsal Moderate Regionally restricted euxassay_004694_07
TS23: hand mesenchyme Moderate Regionally restricted euxassay_004694_07
TS23: turbinate bone primordium Weak Regionally restricted euxassay_004694_07
TS23: renal cortex Strong Regionally restricted euxassay_004694_07
Specimen euxassay_004694_08: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: mandible Weak Regionally restricted euxassay_004694_08
TS23: hindlimb digit 2 metatarsal Moderate Regionally restricted euxassay_004694_08
TS23: femur Moderate Regionally restricted euxassay_004694_08
TS23: pons ventricular layer Moderate Regionally restricted euxassay_004694_08
TS23: midbrain ventricular layer Moderate Regionally restricted euxassay_004694_08
TS23: turbinate bone primordium Weak Regionally restricted euxassay_004694_08
TS23: renal cortex Strong Regionally restricted euxassay_004694_08
TS23: submandibular gland primordium Moderate Regionally restricted euxassay_004694_08
Specimen euxassay_004694_09: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: hindlimb digit 2 metatarsal Moderate Regionally restricted euxassay_004694_09
TS23: hindlimb digit 3 metatarsal Moderate Regionally restricted euxassay_004694_09
TS23: hindlimb digit 4 metatarsal Moderate Regionally restricted euxassay_004694_09
TS23: hindlimb digit 5 metatarsal Moderate Regionally restricted euxassay_004694_09
TS23: midbrain ventricular layer Moderate Regionally restricted euxassay_004694_09
TS23: medulla oblongata basal plate ventricular layer Weak Regionally restricted euxassay_004694_09
TS23: turbinate bone primordium Weak Regionally restricted euxassay_004694_09
TS23: renal cortex Moderate Regionally restricted euxassay_004694_09
TS23: submandibular gland primordium Moderate Regionally restricted euxassay_004694_09
Specimen euxassay_004694_10: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: hindlimb digit 2 metatarsal Moderate Regionally restricted euxassay_004694_10
TS23: hindlimb digit 3 metatarsal Moderate Regionally restricted euxassay_004694_10
TS23: midbrain ventricular layer Moderate Regionally restricted euxassay_004694_10
TS23: medulla oblongata basal plate ventricular layer Moderate Regionally restricted euxassay_004694_10
TS23: turbinate bone primordium Weak Regionally restricted euxassay_004694_10
TS23: renal cortex Moderate Regionally restricted euxassay_004694_10
TS23: submandibular gland primordium Moderate Regionally restricted euxassay_004694_10
Specimen euxassay_004694_11: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: mandible Weak Regionally restricted euxassay_004694_11
TS23: midbrain ventricular layer Moderate Regionally restricted euxassay_004694_11
TS23: medulla oblongata basal plate ventricular layer Moderate Regionally restricted euxassay_004694_11
TS23: clavicle Moderate Regionally restricted euxassay_004694_11
TS23: turbinate bone primordium Weak Regionally restricted euxassay_004694_11
TS23: submandibular gland primordium Moderate Regionally restricted euxassay_004694_11
TS23: thoracic intervertebral disc Moderate Regionally restricted euxassay_004694_11
Specimen euxassay_004694_12: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: mandible Weak Regionally restricted euxassay_004694_12
TS23: midbrain ventricular layer Moderate Regionally restricted euxassay_004694_12
TS23: spinal cord ventricular layer Moderate Regionally restricted euxassay_004694_12
TS23: diencephalon lateral wall ventricular layer Moderate Regionally restricted euxassay_004694_12 roof plate of prosomere 1
TS23: nasal septum Weak Regionally restricted euxassay_004694_12
TS23: pectoral girdle and thoracic body wall muscle Moderate Regionally restricted euxassay_004694_12
Specimen euxassay_004694_13: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: midbrain ventricular layer Weak Regionally restricted euxassay_004694_13
TS23: spinal cord ventricular layer Moderate Regionally restricted euxassay_004694_13
TS23: diencephalon lateral wall ventricular layer Moderate Regionally restricted euxassay_004694_13 roof plate of prosomere 1
TS23: nasal septum Weak Regionally restricted euxassay_004694_13
TS23: pectoral girdle and thoracic body wall muscle Moderate Regionally restricted euxassay_004694_13
Specimen euxassay_004694_14: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: midbrain ventricular layer Moderate Regionally restricted euxassay_004694_14
TS23: spinal cord ventricular layer Moderate Regionally restricted euxassay_004694_14
TS23: nasal septum Weak Regionally restricted euxassay_004694_14
TS23: pectoral girdle and thoracic body wall muscle Moderate Regionally restricted euxassay_004694_14
TS23: trachea Strong Regionally restricted euxassay_004694_14
Specimen euxassay_004694_15: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: midbrain ventricular layer Moderate Regionally restricted euxassay_004694_15
TS23: medulla oblongata basal plate ventricular layer Moderate Regionally restricted euxassay_004694_15
TS23: olfactory cortex ventricular layer Moderate Regionally restricted euxassay_004694_15
TS23: nasal septum Weak Regionally restricted euxassay_004694_15
TS23: pectoral girdle and thoracic body wall muscle Moderate Regionally restricted euxassay_004694_15
TS23: trachea Strong Regionally restricted euxassay_004694_15
Specimen euxassay_004694_16: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: midbrain ventricular layer Moderate Regionally restricted euxassay_004694_16
TS23: medulla oblongata basal plate ventricular layer Moderate Regionally restricted euxassay_004694_16
TS23: olfactory cortex ventricular layer Moderate Regionally restricted euxassay_004694_16
TS23: nasal septum Weak Regionally restricted euxassay_004694_16
TS23: pectoral girdle and thoracic body wall muscle Moderate Regionally restricted euxassay_004694_16
TS23: renal cortex Moderate Regionally restricted euxassay_004694_16
Specimen euxassay_004694_17: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: midbrain ventricular layer Moderate Regionally restricted euxassay_004694_17
TS23: medulla oblongata basal plate ventricular layer Moderate Regionally restricted euxassay_004694_17
TS23: olfactory cortex ventricular layer Weak Regionally restricted euxassay_004694_17
TS23: clavicle Moderate Regionally restricted euxassay_004694_17
TS23: turbinate bone primordium Weak Regionally restricted euxassay_004694_17
TS23: renal cortex Strong Regionally restricted euxassay_004694_17
TS23: femur Strong Regionally restricted euxassay_004694_17
Specimen euxassay_004694_18: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: pons ventricular layer Moderate Regionally restricted euxassay_004694_18
TS23: turbinate bone primordium Weak Regionally restricted euxassay_004694_18
TS23: renal cortex Strong Regionally restricted euxassay_004694_18
TS23: submandibular gland primordium Moderate Regionally restricted euxassay_004694_18
Specimen euxassay_004694_19: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: pons ventricular layer Moderate Regionally restricted euxassay_004694_19
TS23: turbinate bone primordium Weak Regionally restricted euxassay_004694_19
TS23: renal cortex Strong Regionally restricted euxassay_004694_19
TS23: submandibular gland primordium Moderate Regionally restricted euxassay_004694_19
Specimen euxassay_004694_20: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: mandible Weak Regionally restricted euxassay_004694_20
TS23: hand mesenchyme Moderate Regionally restricted euxassay_004694_20
TS23: renal cortex Strong Regionally restricted euxassay_004694_20
TS23: submandibular gland primordium Moderate Regionally restricted euxassay_004694_20
Specimen euxassay_004694_21: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: mandible Weak Regionally restricted euxassay_004694_21
TS23: hand mesenchyme Moderate Regionally restricted euxassay_004694_21
Specimen euxassay_004694_22: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: mandible Weak Regionally restricted euxassay_004694_22
TS23: foot mesenchyme Moderate Regionally restricted euxassay_004694_22
TS23: hand mesenchyme Moderate Regionally restricted euxassay_004694_22
TS23: humerus Moderate Regionally restricted euxassay_004694_22
Specimen euxassay_004694_23: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: mandible Moderate Regionally restricted euxassay_004694_23
TS23: maxilla Moderate Regionally restricted euxassay_004694_23
TS23: hindlimb digit 5 metatarsal Moderate Regionally restricted euxassay_004694_23
TS23: hand mesenchyme Moderate Regionally restricted euxassay_004694_23
Specimen euxassay_004694_24: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: mandible Moderate Regionally restricted euxassay_004694_24
TS23: maxilla Moderate Regionally restricted euxassay_004694_24
TS23: foot mesenchyme Moderate Regionally restricted euxassay_004694_24
TS23: hindlimb digit 1 metatarsal Moderate Regionally restricted euxassay_004694_24
TS23: hindlimb digit 2 metatarsal Moderate Regionally restricted euxassay_004694_24
TS23: hindlimb digit 3 metatarsal Moderate Regionally restricted euxassay_004694_24
TS23: hindlimb digit 4 metatarsal Moderate Regionally restricted euxassay_004694_24
TS23: hindlimb digit 5 metatarsal Moderate Regionally restricted euxassay_004694_24
TS23: hand mesenchyme Moderate Regionally restricted euxassay_004694_24
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
05/07/2024
MGI 6.23 		The Jackson Laboratory