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Gene Expression Data
Assay Details
Assay
Reference: J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
Assay type: RNA in situ
MGI Accession ID: MGI:4824898
Gene symbol: Foxc1
Gene name: forkhead box C1
Probe: T38224
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Assay notes: Cryosections of fresh frozen material were fixed in 4% paraformaldehyde for 20 min. before further processing. A tyramide-biotin/streptavidin amplification step was included in the in situ hybridization procedure.
Results
Specimen euxassay_012742_01: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon meninges Weak Regionally restricted euxassay_012742_01
TS23: forelimb digit 3 mesenchyme Moderate Regionally restricted euxassay_012742_01
Specimen euxassay_012742_02: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon meninges Weak Regionally restricted euxassay_012742_02
TS23: forelimb digit 1 mesenchyme Moderate Regionally restricted euxassay_012742_02
TS23: forelimb digit 2 mesenchyme Moderate Regionally restricted euxassay_012742_02
Specimen euxassay_012742_03: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon meninges Moderate Regionally restricted euxassay_012742_03
TS23: forelimb digit 1 mesenchyme Moderate Regionally restricted euxassay_012742_03
TS23: forelimb digit 2 mesenchyme Moderate Regionally restricted euxassay_012742_03
Specimen euxassay_012742_04: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon meninges Moderate Regionally restricted euxassay_012742_04
TS23: lower leg mesenchyme Moderate Regionally restricted euxassay_012742_04
Specimen euxassay_012742_05: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon meninges Moderate Regionally restricted euxassay_012742_05
TS23: hindlimb digit 1 mesenchyme Moderate Regionally restricted euxassay_012742_05
TS23: hindlimb digit 2 mesenchyme Moderate Regionally restricted euxassay_012742_05
TS23: hindlimb digit 3 mesenchyme Moderate Regionally restricted euxassay_012742_05
TS23: hindlimb digit 4 mesenchyme Moderate Regionally restricted euxassay_012742_05
TS23: hindlimb digit 5 mesenchyme Moderate Regionally restricted euxassay_012742_05
Specimen euxassay_012742_06: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon meninges Moderate Regionally restricted euxassay_012742_06
TS23: hindbrain meninges Moderate Regionally restricted euxassay_012742_06
TS23: hindlimb digit 5 mesenchyme Moderate Regionally restricted euxassay_012742_06
TS23: hindlimb digit 4 mesenchyme Moderate Regionally restricted euxassay_012742_06
TS23: hindlimb digit 3 mesenchyme Moderate Regionally restricted euxassay_012742_06
TS23: hindlimb digit 2 mesenchyme Moderate Regionally restricted euxassay_012742_06
TS23: hindlimb digit 1 mesenchyme Moderate Regionally restricted euxassay_012742_06
Specimen euxassay_012742_07: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon meninges Moderate Regionally restricted euxassay_012742_07
TS23: hindbrain meninges Moderate Regionally restricted euxassay_012742_07
TS23: midbrain meninges Moderate Regionally restricted euxassay_012742_07
TS23: nasal cavity Moderate Regionally restricted euxassay_012742_07
TS23: turbinate bone primordium Moderate Regionally restricted euxassay_012742_07
TS23: otic capsule Moderate Regionally restricted euxassay_012742_07
TS23: hindlimb digit 1 mesenchyme Moderate Regionally restricted euxassay_012742_07
TS23: hindlimb digit 2 mesenchyme Moderate Regionally restricted euxassay_012742_07
TS23: hindlimb digit 3 mesenchyme Moderate Regionally restricted euxassay_012742_07
TS23: hindlimb digit 4 mesenchyme Moderate Regionally restricted euxassay_012742_07
TS23: hindlimb digit 5 mesenchyme Moderate Regionally restricted euxassay_012742_07
Specimen euxassay_012742_08: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon meninges Moderate Regionally restricted euxassay_012742_08
TS23: hindbrain meninges Moderate Regionally restricted euxassay_012742_08
TS23: midbrain meninges Moderate Regionally restricted euxassay_012742_08
TS23: diencephalon meninges Moderate Regionally restricted euxassay_012742_08
TS23: nasal cavity Moderate Regionally restricted euxassay_012742_08
TS23: turbinate bone primordium Moderate Regionally restricted euxassay_012742_08
TS23: otic capsule Moderate Regionally restricted euxassay_012742_08
TS23: submandibular gland primordium Moderate Regionally restricted euxassay_012742_08
Specimen euxassay_012742_09: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: diencephalon meninges Moderate Regionally restricted euxassay_012742_09
TS23: telencephalon meninges Moderate Regionally restricted euxassay_012742_09
TS23: hindbrain meninges Moderate Regionally restricted euxassay_012742_09
TS23: midbrain meninges Moderate Regionally restricted euxassay_012742_09
TS23: nasal cavity Moderate Regionally restricted euxassay_012742_09
TS23: turbinate bone primordium Moderate Regionally restricted euxassay_012742_09
TS23: otic capsule Moderate Regionally restricted euxassay_012742_09
TS23: submandibular gland primordium Moderate Regionally restricted euxassay_012742_09
Specimen euxassay_012742_10: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: diencephalon meninges Moderate Regionally restricted euxassay_012742_10
TS23: telencephalon meninges Moderate Regionally restricted euxassay_012742_10
TS23: hindbrain meninges Moderate Regionally restricted euxassay_012742_10
TS23: midbrain meninges Moderate Regionally restricted euxassay_012742_10
TS23: nasal cavity Moderate Regionally restricted euxassay_012742_10
TS23: turbinate bone primordium Moderate Regionally restricted euxassay_012742_10
TS23: otic capsule Moderate Regionally restricted euxassay_012742_10
TS23: submandibular gland primordium Moderate Regionally restricted euxassay_012742_10
Specimen euxassay_012742_11: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: diencephalon meninges Moderate Regionally restricted euxassay_012742_11
TS23: telencephalon meninges Moderate Regionally restricted euxassay_012742_11
TS23: hindbrain meninges Moderate Regionally restricted euxassay_012742_11
TS23: midbrain meninges Moderate Regionally restricted euxassay_012742_11
TS23: spinal cord meninges Moderate Regionally restricted euxassay_012742_11
TS23: nasal cavity Moderate Regionally restricted euxassay_012742_11
TS23: turbinate bone primordium Moderate Regionally restricted euxassay_012742_11
TS23: otic capsule Moderate Regionally restricted euxassay_012742_11
TS23: submandibular gland primordium Moderate Regionally restricted euxassay_012742_11
Specimen euxassay_012742_12: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: diencephalon meninges Moderate Regionally restricted euxassay_012742_12
TS23: telencephalon meninges Moderate Regionally restricted euxassay_012742_12
TS23: hindbrain meninges Moderate Regionally restricted euxassay_012742_12
TS23: midbrain meninges Moderate Regionally restricted euxassay_012742_12
TS23: spinal cord meninges Moderate Regionally restricted euxassay_012742_12
TS23: nasal septum Moderate Regionally restricted euxassay_012742_12
Specimen euxassay_012742_13: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: diencephalon meninges Moderate Regionally restricted euxassay_012742_13
TS23: telencephalon meninges Moderate Regionally restricted euxassay_012742_13
TS23: hindbrain meninges Moderate Regionally restricted euxassay_012742_13
TS23: midbrain meninges Moderate Regionally restricted euxassay_012742_13
TS23: spinal cord meninges Moderate Regionally restricted euxassay_012742_13
TS23: nasal septum Moderate Regionally restricted euxassay_012742_13
Specimen euxassay_012742_14: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: diencephalon meninges Moderate Regionally restricted euxassay_012742_14
TS23: telencephalon meninges Moderate Regionally restricted euxassay_012742_14
TS23: hindbrain meninges Moderate Regionally restricted euxassay_012742_14
TS23: midbrain meninges Moderate Regionally restricted euxassay_012742_14
TS23: spinal cord meninges Moderate Regionally restricted euxassay_012742_14
TS23: nasal cavity Moderate Regionally restricted euxassay_012742_14
TS23: turbinate bone primordium Moderate Regionally restricted euxassay_012742_14
Specimen euxassay_012742_15: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: diencephalon meninges Moderate Regionally restricted euxassay_012742_15
TS23: telencephalon meninges Moderate Regionally restricted euxassay_012742_15
TS23: hindbrain meninges Moderate Regionally restricted euxassay_012742_15
TS23: midbrain meninges Moderate Regionally restricted euxassay_012742_15
TS23: spinal cord meninges Moderate Regionally restricted euxassay_012742_15
TS23: nasal cavity Moderate Regionally restricted euxassay_012742_15
Specimen euxassay_012742_16: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: diencephalon meninges Moderate Regionally restricted euxassay_012742_16
TS23: telencephalon meninges Moderate Regionally restricted euxassay_012742_16
TS23: hindbrain meninges Moderate Regionally restricted euxassay_012742_16
TS23: midbrain meninges Moderate Regionally restricted euxassay_012742_16
TS23: spinal cord meninges Moderate Regionally restricted euxassay_012742_16
TS23: turbinate bone primordium Moderate Regionally restricted euxassay_012742_16
TS23: nasal cavity Moderate Regionally restricted euxassay_012742_16
Specimen euxassay_012742_17: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: diencephalon meninges Moderate Regionally restricted euxassay_012742_17
TS23: telencephalon meninges Moderate Regionally restricted euxassay_012742_17
TS23: hindbrain meninges Moderate Regionally restricted euxassay_012742_17
TS23: midbrain meninges Moderate Regionally restricted euxassay_012742_17
TS23: spinal cord meninges Moderate Regionally restricted euxassay_012742_17
TS23: turbinate bone primordium Moderate Regionally restricted euxassay_012742_17
TS23: nasal cavity Moderate Regionally restricted euxassay_012742_17
TS23: submandibular gland primordium Moderate Regionally restricted euxassay_012742_17
Specimen euxassay_012742_18: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: diencephalon meninges Moderate Regionally restricted euxassay_012742_18
TS23: telencephalon meninges Moderate Regionally restricted euxassay_012742_18
TS23: hindbrain meninges Moderate Regionally restricted euxassay_012742_18
TS23: midbrain meninges Moderate Regionally restricted euxassay_012742_18
TS23: spinal cord meninges Moderate Regionally restricted euxassay_012742_18
TS23: turbinate bone primordium Moderate Regionally restricted euxassay_012742_18
TS23: otic capsule Moderate Regionally restricted euxassay_012742_18
TS23: submandibular gland primordium Moderate Regionally restricted euxassay_012742_18
Specimen euxassay_012742_19: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: diencephalon meninges Moderate Regionally restricted euxassay_012742_19
TS23: telencephalon meninges Moderate Regionally restricted euxassay_012742_19
TS23: hindbrain meninges Moderate Regionally restricted euxassay_012742_19
TS23: midbrain meninges Moderate Regionally restricted euxassay_012742_19
TS23: spinal cord meninges Moderate Regionally restricted euxassay_012742_19
TS23: otic capsule Moderate Regionally restricted euxassay_012742_19
TS23: submandibular gland primordium Moderate Regionally restricted euxassay_012742_19
Specimen euxassay_012742_20: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: diencephalon meninges Moderate Regionally restricted euxassay_012742_20
TS23: telencephalon meninges Moderate Regionally restricted euxassay_012742_20
TS23: hindbrain meninges Moderate Regionally restricted euxassay_012742_20
TS23: midbrain meninges Moderate Regionally restricted euxassay_012742_20
TS23: otic capsule Moderate Regionally restricted euxassay_012742_20
TS23: hindlimb digit 1 mesenchyme Moderate Regionally restricted euxassay_012742_20
TS23: hindlimb digit 2 mesenchyme Moderate Regionally restricted euxassay_012742_20
TS23: hindlimb digit 3 mesenchyme Moderate Regionally restricted euxassay_012742_20
TS23: hindlimb digit 4 mesenchyme Moderate Regionally restricted euxassay_012742_20
TS23: hindlimb digit 5 mesenchyme Moderate Regionally restricted euxassay_012742_20
Specimen euxassay_012742_21: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: diencephalon meninges Moderate Regionally restricted euxassay_012742_21
TS23: telencephalon meninges Moderate Regionally restricted euxassay_012742_21
TS23: hindbrain meninges Moderate Regionally restricted euxassay_012742_21
TS23: midbrain meninges Moderate Regionally restricted euxassay_012742_21
TS23: otic capsule Moderate Regionally restricted euxassay_012742_21
TS23: hindlimb digit 1 mesenchyme Weak Regionally restricted euxassay_012742_21
TS23: hindlimb digit 2 mesenchyme Weak Regionally restricted euxassay_012742_21
TS23: hindlimb digit 3 mesenchyme Weak Regionally restricted euxassay_012742_21
TS23: hindlimb digit 4 mesenchyme Weak Regionally restricted euxassay_012742_21
TS23: hindlimb digit 5 mesenchyme Weak Regionally restricted euxassay_012742_21
Specimen euxassay_012742_22: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon meninges Moderate Regionally restricted euxassay_012742_22
TS23: hindbrain meninges Moderate Regionally restricted euxassay_012742_22
TS23: otic capsule Moderate Regionally restricted euxassay_012742_22
TS23: hindlimb digit 1 mesenchyme Weak Regionally restricted euxassay_012742_22
TS23: hindlimb digit 2 mesenchyme Weak Regionally restricted euxassay_012742_22
TS23: hindlimb digit 3 mesenchyme Weak Regionally restricted euxassay_012742_22
TS23: hindlimb digit 4 mesenchyme Weak Regionally restricted euxassay_012742_22
TS23: hindlimb digit 5 mesenchyme Weak Regionally restricted euxassay_012742_22
TS23: forelimb digit 1 mesenchyme Weak Regionally restricted euxassay_012742_22
TS23: forelimb digit 2 mesenchyme Weak Regionally restricted euxassay_012742_22
Specimen euxassay_012742_23: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon meninges Moderate Regionally restricted euxassay_012742_23
TS23: hindbrain meninges Moderate Regionally restricted euxassay_012742_23
TS23: lower leg mesenchyme Weak Regionally restricted euxassay_012742_23
TS23: forelimb digit 1 mesenchyme Weak Regionally restricted euxassay_012742_23
TS23: forelimb digit 2 mesenchyme Weak Regionally restricted euxassay_012742_23
TS23: forelimb digit 3 mesenchyme Weak Regionally restricted euxassay_012742_23
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Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
03/25/2025
MGI 6.24 		The Jackson Laboratory