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Gene Expression Data
Assay Details
Assay
Reference: J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
Assay type: RNA in situ
MGI Accession ID: MGI:4823989
Gene symbol: Col2a1
Gene name: collagen, type II, alpha 1
Probe: ES2387 probe 2292
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Assay notes: Cryosections of fresh frozen material were fixed in 4% paraformaldehyde for 20 min. before further processing. A tyramide-biotin/streptavidin amplification step was included in the in situ hybridization procedure.
Results
Specimen euxassay_013804_01: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: embryo mesenchyme Moderate Regionally restricted euxassay_013804_01
TS23: stomach Strong Regionally restricted euxassay_013804_01 smooth muscle
TS23: smooth muscle tissue Present euxassay_013804_01
Specimen euxassay_013804_02: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: embryo mesenchyme Moderate Regionally restricted euxassay_013804_02
TS23: hindlimb digit 2 phalanx Moderate Regionally restricted euxassay_013804_02
TS23: hindlimb digit 3 phalanx Moderate Regionally restricted euxassay_013804_02
TS23: hindlimb digit 4 phalanx Moderate Regionally restricted euxassay_013804_02
TS23: stomach Strong Regionally restricted euxassay_013804_02 smooth muscle
TS23: smooth muscle tissue Present euxassay_013804_02
Specimen euxassay_013804_03: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: embryo mesenchyme Moderate Regionally restricted euxassay_013804_03
TS23: forelimb digit 3 phalanx Moderate Regionally restricted euxassay_013804_03
TS23: forelimb digit 2 phalanx Moderate Regionally restricted euxassay_013804_03
TS23: hindlimb digit 5 phalanx Moderate Regionally restricted euxassay_013804_03
TS23: hindlimb digit 4 phalanx Moderate Regionally restricted euxassay_013804_03
TS23: hindlimb digit 3 phalanx Moderate Regionally restricted euxassay_013804_03
TS23: hindlimb digit 2 phalanx Moderate Regionally restricted euxassay_013804_03
TS23: hindlimb digit 1 phalanx Moderate Regionally restricted euxassay_013804_03
TS23: stomach Strong Regionally restricted euxassay_013804_03 smooth muscle
TS23: smooth muscle tissue Present euxassay_013804_03
TS23: telencephalon ventricular layer Weak Uniform euxassay_013804_03
Specimen euxassay_013804_04: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: embryo mesenchyme Moderate Regionally restricted euxassay_013804_04
TS23: hindlimb digit 5 phalanx Strong Regionally restricted euxassay_013804_04
TS23: hindlimb digit 4 phalanx Strong Regionally restricted euxassay_013804_04
TS23: hindlimb digit 3 phalanx Strong Regionally restricted euxassay_013804_04
TS23: hindlimb digit 2 phalanx Strong Regionally restricted euxassay_013804_04
TS23: hindlimb digit 1 phalanx Strong Regionally restricted euxassay_013804_04
TS23: forelimb digit 2 phalanx Strong Regionally restricted euxassay_013804_04
TS23: forelimb digit 1 phalanx Strong Regionally restricted euxassay_013804_04
TS23: forelimb digit 3 phalanx Strong Regionally restricted euxassay_013804_04
TS23: stomach Strong Regionally restricted euxassay_013804_04 smooth muscle
TS23: smooth muscle tissue Present euxassay_013804_04
TS23: telencephalon ventricular layer Weak Uniform euxassay_013804_04
Specimen euxassay_013804_05: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: embryo mesenchyme Moderate Regionally restricted euxassay_013804_05
TS23: hindlimb digit 1 phalanx Strong Regionally restricted euxassay_013804_05
TS23: hindlimb digit 2 phalanx Strong Regionally restricted euxassay_013804_05
TS23: hindlimb digit 3 phalanx Strong Regionally restricted euxassay_013804_05
TS23: hindlimb digit 4 phalanx Strong Regionally restricted euxassay_013804_05
TS23: hindlimb digit 5 phalanx Strong Regionally restricted euxassay_013804_05
TS23: stomach Moderate Regionally restricted euxassay_013804_05 smooth muscle
TS23: smooth muscle tissue Present euxassay_013804_05
TS23: telencephalon ventricular layer Weak Uniform euxassay_013804_05
Specimen euxassay_013804_06: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: embryo mesenchyme Moderate Regionally restricted euxassay_013804_06
TS23: forelimb digit 2 phalanx Strong Regionally restricted euxassay_013804_06
TS23: forelimb digit 1 phalanx Strong Regionally restricted euxassay_013804_06
TS23: metanephros Weak Regionally restricted euxassay_013804_06
TS23: stomach Moderate Regionally restricted euxassay_013804_06 smooth muscle
TS23: smooth muscle tissue Present euxassay_013804_06
TS23: telencephalon ventricular layer Weak Uniform euxassay_013804_06
Specimen euxassay_013804_07: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: embryo mesenchyme Moderate Regionally restricted euxassay_013804_07
TS23: forelimb digit 1 phalanx Strong Regionally restricted euxassay_013804_07
TS23: forelimb digit 2 phalanx Strong Regionally restricted euxassay_013804_07
TS23: metanephros Weak Regionally restricted euxassay_013804_07
TS23: stomach Moderate Regionally restricted euxassay_013804_07 smooth muscle
TS23: smooth muscle tissue Present euxassay_013804_07
TS23: turbinate bone primordium Strong Regionally restricted euxassay_013804_07
TS23: otic capsule Strong Regionally restricted euxassay_013804_07
TS23: telencephalon ventricular layer Weak Uniform euxassay_013804_07
Specimen euxassay_013804_08: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: embryo mesenchyme Moderate Regionally restricted euxassay_013804_08
TS23: metanephros Weak Regionally restricted euxassay_013804_08
TS23: stomach Moderate Regionally restricted euxassay_013804_08 smooth muscle
TS23: smooth muscle tissue Present euxassay_013804_08
TS23: turbinate bone primordium Strong Regionally restricted euxassay_013804_08
TS23: otic capsule Strong Regionally restricted euxassay_013804_08
TS23: telencephalon ventricular layer Weak Uniform euxassay_013804_08
TS23: midbrain ventricular layer Weak Regionally restricted euxassay_013804_08
TS23: pons ventricular layer Weak Regionally restricted euxassay_013804_08
Specimen euxassay_013804_09: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: embryo mesenchyme Moderate Regionally restricted euxassay_013804_09
TS23: stomach Moderate Regionally restricted euxassay_013804_09 smooth muscle
TS23: smooth muscle tissue Present euxassay_013804_09
TS23: midgut Moderate Regionally restricted euxassay_013804_09 smooth muscle
TS23: turbinate bone primordium Strong Regionally restricted euxassay_013804_09
TS23: otic capsule Strong Regionally restricted euxassay_013804_09
TS23: telencephalon ventricular layer Weak Uniform euxassay_013804_09
TS23: olfactory cortex ventricular layer Weak Uniform euxassay_013804_09
TS23: pons ventricular layer Weak Regionally restricted euxassay_013804_09
TS23: midbrain ventricular layer Weak Regionally restricted euxassay_013804_09
TS23: axial skeleton Moderate Regionally restricted euxassay_013804_09
TS23: axial skeleton tail region Moderate Regionally restricted euxassay_013804_09
Specimen euxassay_013804_10: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: embryo mesenchyme Moderate Regionally restricted euxassay_013804_10
TS23: midgut Moderate Regionally restricted euxassay_013804_10 smooth muscle
TS23: smooth muscle tissue Present euxassay_013804_10
TS23: nasal septum Strong Regionally restricted euxassay_013804_10
TS23: turbinate bone primordium Strong Regionally restricted euxassay_013804_10
TS23: telencephalon ventricular layer Weak Uniform euxassay_013804_10
TS23: olfactory cortex ventricular layer Weak Uniform euxassay_013804_10
TS23: medulla oblongata basal plate ventricular layer Weak Regionally restricted euxassay_013804_10
TS23: pons ventricular layer Weak Regionally restricted euxassay_013804_10
TS23: midbrain ventricular layer Weak Regionally restricted euxassay_013804_10
TS23: axial skeleton tail region Moderate Regionally restricted euxassay_013804_10
TS23: axial skeleton Moderate Regionally restricted euxassay_013804_10
Specimen euxassay_013804_11: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: embryo mesenchyme Moderate Regionally restricted euxassay_013804_11
TS23: heart valve Moderate Regionally restricted euxassay_013804_11
TS23: thyroid cartilage Strong Regionally restricted euxassay_013804_11
TS23: midgut Moderate Regionally restricted euxassay_013804_11 smooth muscle
TS23: smooth muscle tissue Present euxassay_013804_11
TS23: nasal septum Strong Regionally restricted euxassay_013804_11
TS23: turbinate bone primordium Strong Regionally restricted euxassay_013804_11
TS23: diencephalon lateral wall ventricular layer Moderate Uniform euxassay_013804_11
TS23: midbrain ventricular layer Weak Regionally restricted euxassay_013804_11
TS23: pons ventricular layer Weak Regionally restricted euxassay_013804_11
TS23: medulla oblongata basal plate ventricular layer Weak Regionally restricted euxassay_013804_11
TS23: axial skeleton tail region Moderate Regionally restricted euxassay_013804_11
TS23: axial skeleton Moderate Regionally restricted euxassay_013804_11
Specimen euxassay_013804_12: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: embryo mesenchyme Moderate Regionally restricted euxassay_013804_12
TS23: heart valve Moderate Regionally restricted euxassay_013804_12
TS23: thyroid cartilage Strong Regionally restricted euxassay_013804_12
TS23: cricoid cartilage Strong Regionally restricted euxassay_013804_12
TS23: midgut Weak Regionally restricted euxassay_013804_12 smooth muscle
TS23: hindgut Weak Regionally restricted euxassay_013804_12 smooth muscle
TS23: smooth muscle tissue Present euxassay_013804_12
TS23: esophagus Moderate Regionally restricted euxassay_013804_12
TS23: nasal septum Strong Regionally restricted euxassay_013804_12
TS23: diencephalon lateral wall ventricular layer Moderate Uniform euxassay_013804_12
TS23: pons ventricular layer Moderate Regionally restricted euxassay_013804_12
TS23: midbrain ventricular layer Moderate Regionally restricted euxassay_013804_12
TS23: medulla oblongata basal plate ventricular layer Moderate Regionally restricted euxassay_013804_12
TS23: spinal cord floor plate Weak Regionally restricted euxassay_013804_12
TS23: axial skeleton Moderate Regionally restricted euxassay_013804_12
Specimen euxassay_013804_13: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: embryo mesenchyme Moderate Regionally restricted euxassay_013804_13
TS23: heart valve Weak Regionally restricted euxassay_013804_13
TS23: thyroid cartilage Strong Regionally restricted euxassay_013804_13
TS23: cricoid cartilage Strong Regionally restricted euxassay_013804_13
TS23: trachea cartilaginous ring Moderate Regionally restricted euxassay_013804_13
TS23: midgut Weak Regionally restricted euxassay_013804_13 smooth muscle
TS23: hindgut Weak Regionally restricted euxassay_013804_13 smooth muscle
TS23: smooth muscle tissue Present euxassay_013804_13
TS23: esophagus Moderate Regionally restricted euxassay_013804_13
TS23: nasal septum Strong Regionally restricted euxassay_013804_13
TS23: diencephalon lateral wall ventricular layer Moderate Uniform euxassay_013804_13
TS23: telencephalon ventricular layer Moderate Uniform euxassay_013804_13
TS23: pons ventricular layer Weak Regionally restricted euxassay_013804_13
TS23: midbrain ventricular layer Weak Regionally restricted euxassay_013804_13
TS23: medulla oblongata basal plate ventricular layer Weak Regionally restricted euxassay_013804_13
TS23: spinal cord floor plate Weak Regionally restricted euxassay_013804_13
TS23: axial skeleton Weak Regionally restricted euxassay_013804_13
Specimen euxassay_013804_14: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: embryo mesenchyme Moderate Regionally restricted euxassay_013804_14
TS23: heart valve Weak Regionally restricted euxassay_013804_14
TS23: thyroid cartilage Strong Regionally restricted euxassay_013804_14
TS23: cricoid cartilage Strong Regionally restricted euxassay_013804_14
TS23: trachea cartilaginous ring Moderate Regionally restricted euxassay_013804_14
TS23: midgut Weak Regionally restricted euxassay_013804_14 smooth muscle
TS23: hindgut Weak Regionally restricted euxassay_013804_14 smooth muscle
TS23: smooth muscle tissue Present euxassay_013804_14
TS23: nasal septum Strong Regionally restricted euxassay_013804_14
TS23: telencephalon ventricular layer Weak Uniform euxassay_013804_14
TS23: diencephalon lateral wall ventricular layer Moderate Uniform euxassay_013804_14
TS23: pons ventricular layer Weak Regionally restricted euxassay_013804_14
TS23: midbrain ventricular layer Weak Regionally restricted euxassay_013804_14
TS23: medulla oblongata basal plate ventricular layer Weak Regionally restricted euxassay_013804_14
TS23: axial skeleton Weak Regionally restricted euxassay_013804_14
Specimen euxassay_013804_15: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: embryo mesenchyme Moderate Regionally restricted euxassay_013804_15
TS23: heart valve Weak Regionally restricted euxassay_013804_15
TS23: thyroid cartilage Strong Regionally restricted euxassay_013804_15
TS23: trachea cartilaginous ring Weak Regionally restricted euxassay_013804_15
TS23: metanephros Weak Regionally restricted euxassay_013804_15
TS23: midgut Weak Regionally restricted euxassay_013804_15 smooth muscle
TS23: smooth muscle tissue Present euxassay_013804_15
TS23: nasal septum Strong Regionally restricted euxassay_013804_15
TS23: turbinate bone primordium Strong Regionally restricted euxassay_013804_15
TS23: telencephalon ventricular layer Weak Uniform euxassay_013804_15
TS23: olfactory cortex ventricular layer Weak Uniform euxassay_013804_15
TS23: midbrain ventricular layer Weak Regionally restricted euxassay_013804_15
TS23: pons ventricular layer Weak Regionally restricted euxassay_013804_15
TS23: axial skeleton Weak Regionally restricted euxassay_013804_15
Specimen euxassay_013804_16: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: embryo mesenchyme Moderate Regionally restricted euxassay_013804_16
TS23: hindlimb digit 2 phalanx Strong Regionally restricted euxassay_013804_16
TS23: hindlimb digit 3 phalanx Strong Regionally restricted euxassay_013804_16
TS23: hindlimb digit 5 phalanx Strong Regionally restricted euxassay_013804_16
TS23: hindlimb digit 1 phalanx Moderate Regionally restricted euxassay_013804_16
TS23: metanephros Weak Regionally restricted euxassay_013804_16
TS23: midgut Weak Regionally restricted euxassay_013804_16 smooth muscle
TS23: smooth muscle tissue Present euxassay_013804_16
TS23: turbinate bone primordium Strong Regionally restricted euxassay_013804_16
TS23: telencephalon ventricular layer Weak Uniform euxassay_013804_16
TS23: olfactory cortex ventricular layer Weak Uniform euxassay_013804_16
TS23: midbrain ventricular layer Weak Regionally restricted euxassay_013804_16
TS23: pons ventricular layer Weak Regionally restricted euxassay_013804_16
Specimen euxassay_013804_17: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: embryo mesenchyme Moderate Regionally restricted euxassay_013804_17
TS23: hindlimb digit 1 phalanx Strong Regionally restricted euxassay_013804_17
TS23: hindlimb digit 2 phalanx Strong Regionally restricted euxassay_013804_17
TS23: hindlimb digit 3 phalanx Strong Regionally restricted euxassay_013804_17
TS23: metanephros Weak Regionally restricted euxassay_013804_17
TS23: midgut Weak Regionally restricted euxassay_013804_17 smooth muscle
TS23: smooth muscle tissue Present euxassay_013804_17
TS23: turbinate bone primordium Strong Regionally restricted euxassay_013804_17
TS23: otic capsule Strong Regionally restricted euxassay_013804_17
TS23: telencephalon ventricular layer Weak Uniform euxassay_013804_17
TS23: midbrain ventricular layer Weak Regionally restricted euxassay_013804_17
TS23: pons ventricular layer Weak Regionally restricted euxassay_013804_17
Specimen euxassay_013804_18: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: embryo mesenchyme Moderate Regionally restricted euxassay_013804_18
TS23: metanephros Weak Regionally restricted euxassay_013804_18
TS23: midgut Weak Regionally restricted euxassay_013804_18 smooth muscle
TS23: smooth muscle tissue Present euxassay_013804_18
TS23: turbinate bone primordium Strong Regionally restricted euxassay_013804_18
TS23: otic capsule Strong Regionally restricted euxassay_013804_18
TS23: telencephalon ventricular layer Weak Uniform euxassay_013804_18
Specimen euxassay_013804_19: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: embryo mesenchyme Moderate Regionally restricted euxassay_013804_19
TS23: metanephros Weak Regionally restricted euxassay_013804_19
TS23: midgut Weak Regionally restricted euxassay_013804_19 smooth muscle
TS23: smooth muscle tissue Present euxassay_013804_19
TS23: otic capsule Strong Regionally restricted euxassay_013804_19
TS23: telencephalon ventricular layer Weak Uniform euxassay_013804_19
Specimen euxassay_013804_20: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: embryo mesenchyme Moderate Regionally restricted euxassay_013804_20
TS23: forelimb digit 3 phalanx Strong Regionally restricted euxassay_013804_20
TS23: forelimb digit 2 phalanx Strong Regionally restricted euxassay_013804_20
TS23: forelimb digit 1 phalanx Strong Regionally restricted euxassay_013804_20
TS23: telencephalon ventricular layer Weak Uniform euxassay_013804_20
Specimen euxassay_013804_21: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: embryo mesenchyme Moderate Regionally restricted euxassay_013804_21
TS23: forelimb digit 3 phalanx Strong Regionally restricted euxassay_013804_21
TS23: forelimb digit 2 phalanx Strong Regionally restricted euxassay_013804_21
TS23: forelimb digit 1 phalanx Strong Regionally restricted euxassay_013804_21
TS23: telencephalon ventricular layer Weak Uniform euxassay_013804_21
Specimen euxassay_013804_22: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: embryo mesenchyme Moderate Regionally restricted euxassay_013804_22
TS23: forelimb digit 1 phalanx Strong Regionally restricted euxassay_013804_22
TS23: forelimb digit 2 phalanx Strong Regionally restricted euxassay_013804_22
TS23: forelimb digit 3 phalanx Strong Regionally restricted euxassay_013804_22
TS23: telencephalon ventricular layer Weak Uniform euxassay_013804_22
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
04/30/2024
MGI 6.23 		The Jackson Laboratory