About   Help   FAQ
Gene Expression Data
Assay Details
Assay
Reference: J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
Assay type: RNA in situ
MGI Accession ID: MGI:4823982
Gene symbol: Col18a1
Gene name: collagen, type XVIII, alpha 1
Probe: MGC clone 69992
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Assay notes: Cryosections of fresh frozen material were fixed in 4% paraformaldehyde for 20 min. before further processing. A tyramide-biotin/streptavidin amplification step was included in the in situ hybridization procedure.
Results
Specimen euxassay_003864_01: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: embryo mesenchyme Moderate Regionally restricted euxassay_003864_01
TS23: physiological umbilical hernia epidermis Strong Regionally restricted euxassay_003864_01
TS23: pharyngo-tympanic tube Strong Regionally restricted euxassay_003864_01
TS23: retina Moderate Regionally restricted euxassay_003864_01
Specimen euxassay_003864_02: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon meninges Strong Regionally restricted euxassay_003864_02
TS23: hindbrain meninges Strong Regionally restricted euxassay_003864_02
TS23: embryo mesenchyme Moderate Regionally restricted euxassay_003864_02
TS23: physiological umbilical hernia epidermis Strong Regionally restricted euxassay_003864_02
TS23: pharyngo-tympanic tube Strong Regionally restricted euxassay_003864_02
TS23: lung Strong Regionally restricted euxassay_003864_02
TS23: retina Moderate Regionally restricted euxassay_003864_02
TS23: brain Moderate Single cells euxassay_003864_02
Specimen euxassay_003864_03: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: hindbrain meninges Strong Regionally restricted euxassay_003864_03
TS23: telencephalon meninges Strong Regionally restricted euxassay_003864_03
TS23: embryo mesenchyme Moderate Regionally restricted euxassay_003864_03
TS23: physiological umbilical hernia epidermis Strong Regionally restricted euxassay_003864_03
TS23: pharyngo-tympanic tube Strong Regionally restricted euxassay_003864_03
TS23: cochlea Strong Regionally restricted euxassay_003864_03
TS23: lung Strong Regionally restricted euxassay_003864_03
TS23: retina Moderate Regionally restricted euxassay_003864_03
TS23: brain Moderate Single cells euxassay_003864_03
Specimen euxassay_003864_04: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon meninges Strong Regionally restricted euxassay_003864_04
TS23: hindbrain meninges Strong Regionally restricted euxassay_003864_04
TS23: midbrain meninges Strong Regionally restricted euxassay_003864_04
TS23: embryo mesenchyme Moderate Regionally restricted euxassay_003864_04
TS23: physiological umbilical hernia epidermis Strong Regionally restricted euxassay_003864_04
TS23: cochlea Strong Regionally restricted euxassay_003864_04
TS23: lung Strong Regionally restricted euxassay_003864_04
TS23: metanephros Moderate Regionally restricted euxassay_003864_04
TS23: retina Moderate Regionally restricted euxassay_003864_04
TS23: brain Moderate Single cells euxassay_003864_04
Specimen euxassay_003864_05: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon meninges Strong Regionally restricted euxassay_003864_05
TS23: hindbrain meninges Strong Regionally restricted euxassay_003864_05
TS23: midbrain meninges Strong Regionally restricted euxassay_003864_05
TS23: spinal cord meninges Strong Regionally restricted euxassay_003864_05
TS23: embryo mesenchyme Moderate Regionally restricted euxassay_003864_05
TS23: physiological umbilical hernia epidermis Strong Regionally restricted euxassay_003864_05
TS23: cochlea Strong Regionally restricted euxassay_003864_05
TS23: lung Strong Regionally restricted euxassay_003864_05
TS23: metanephros Moderate Regionally restricted euxassay_003864_05
TS23: heart Moderate Regionally restricted euxassay_003864_05
TS23: retina Moderate Regionally restricted euxassay_003864_05
TS23: cornea Moderate Regionally restricted euxassay_003864_05
TS23: brain Moderate Single cells euxassay_003864_05
TS23: spinal cord Moderate Single cells euxassay_003864_05
Specimen euxassay_003864_06: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon meninges Strong Regionally restricted euxassay_003864_06
TS23: hindbrain meninges Strong Regionally restricted euxassay_003864_06
TS23: midbrain meninges Strong Regionally restricted euxassay_003864_06
TS23: spinal cord meninges Strong Regionally restricted euxassay_003864_06
TS23: embryo mesenchyme Moderate Regionally restricted euxassay_003864_06
TS23: physiological umbilical hernia epidermis Strong Regionally restricted euxassay_003864_06
TS23: cochlea Strong Regionally restricted euxassay_003864_06
TS23: lung Strong Regionally restricted euxassay_003864_06
TS23: metanephros Moderate Regionally restricted euxassay_003864_06
TS23: heart Moderate Regionally restricted euxassay_003864_06
TS23: brain Moderate Single cells euxassay_003864_06
TS23: spinal cord Moderate Single cells euxassay_003864_06
Specimen euxassay_003864_07: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon meninges Strong Regionally restricted euxassay_003864_07
TS23: hindbrain meninges Strong Regionally restricted euxassay_003864_07
TS23: midbrain meninges Strong Regionally restricted euxassay_003864_07
TS23: spinal cord meninges Strong Regionally restricted euxassay_003864_07
TS23: embryo mesenchyme Moderate Regionally restricted euxassay_003864_07
TS23: physiological umbilical hernia epidermis Strong Regionally restricted euxassay_003864_07
TS23: upper jaw molar Strong Regionally restricted euxassay_003864_07
TS23: lower jaw molar Strong Regionally restricted euxassay_003864_07
TS23: cochlea Strong Regionally restricted euxassay_003864_07
TS23: lung Strong Regionally restricted euxassay_003864_07
TS23: metanephros Moderate Regionally restricted euxassay_003864_07
TS23: heart Moderate Regionally restricted euxassay_003864_07
TS23: brain Moderate Single cells euxassay_003864_07
TS23: spinal cord Moderate Single cells euxassay_003864_07
Specimen euxassay_003864_08: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: diencephalon meninges Strong Regionally restricted euxassay_003864_08
TS23: telencephalon meninges Strong Regionally restricted euxassay_003864_08
TS23: midbrain meninges Strong Regionally restricted euxassay_003864_08
TS23: hindbrain meninges Strong Regionally restricted euxassay_003864_08
TS23: spinal cord meninges Strong Regionally restricted euxassay_003864_08
TS23: embryo mesenchyme Moderate Regionally restricted euxassay_003864_08
TS23: physiological umbilical hernia epidermis Strong Regionally restricted euxassay_003864_08
TS23: cochlea Strong Regionally restricted euxassay_003864_08
TS23: lung Strong Regionally restricted euxassay_003864_08
TS23: heart Moderate Regionally restricted euxassay_003864_08
TS23: brain Moderate Single cells euxassay_003864_08
TS23: spinal cord Moderate Single cells euxassay_003864_08
Specimen euxassay_003864_09: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: diencephalon meninges Strong Regionally restricted euxassay_003864_09
TS23: telencephalon meninges Strong Regionally restricted euxassay_003864_09
TS23: hindbrain meninges Strong Regionally restricted euxassay_003864_09
TS23: midbrain meninges Strong Regionally restricted euxassay_003864_09
TS23: spinal cord meninges Strong Regionally restricted euxassay_003864_09
TS23: embryo mesenchyme Moderate Regionally restricted euxassay_003864_09
TS23: olfactory epithelium Strong Regionally restricted euxassay_003864_09
TS23: physiological umbilical hernia epidermis Strong Regionally restricted euxassay_003864_09
TS23: thymus primordium Moderate Regionally restricted euxassay_003864_09
TS23: lung Strong Regionally restricted euxassay_003864_09
TS23: heart Moderate Regionally restricted euxassay_003864_09
TS23: brain Moderate Single cells euxassay_003864_09
TS23: spinal cord Moderate Single cells euxassay_003864_09
Specimen euxassay_003864_10: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: diencephalon meninges Strong Regionally restricted euxassay_003864_10
TS23: telencephalon meninges Strong Regionally restricted euxassay_003864_10
TS23: hindbrain meninges Strong Regionally restricted euxassay_003864_10
TS23: midbrain meninges Strong Regionally restricted euxassay_003864_10
TS23: spinal cord meninges Strong Regionally restricted euxassay_003864_10
TS23: embryo mesenchyme Moderate Regionally restricted euxassay_003864_10
TS23: olfactory epithelium Strong Regionally restricted euxassay_003864_10
TS23: physiological umbilical hernia epidermis Strong Regionally restricted euxassay_003864_10
TS23: adenohypophysis Strong Regionally restricted euxassay_003864_10
TS23: thymus primordium Moderate Regionally restricted euxassay_003864_10
TS23: lung Strong Regionally restricted euxassay_003864_10
TS23: heart Strong Regionally restricted euxassay_003864_10
TS23: brain Moderate Single cells euxassay_003864_10
TS23: spinal cord Moderate Single cells euxassay_003864_10
Specimen euxassay_003864_11: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: diencephalon meninges Strong Regionally restricted euxassay_003864_11
TS23: telencephalon meninges Strong Regionally restricted euxassay_003864_11
TS23: hindbrain meninges Strong Regionally restricted euxassay_003864_11
TS23: midbrain meninges Strong Regionally restricted euxassay_003864_11
TS23: spinal cord meninges Strong Regionally restricted euxassay_003864_11
TS23: embryo mesenchyme Moderate Regionally restricted euxassay_003864_11
TS23: olfactory epithelium Strong Regionally restricted euxassay_003864_11
TS23: physiological umbilical hernia epidermis Strong Regionally restricted euxassay_003864_11
TS23: adenohypophysis Strong Regionally restricted euxassay_003864_11
TS23: lower jaw incisor Strong Regionally restricted euxassay_003864_11
TS23: thymus primordium Moderate Regionally restricted euxassay_003864_11
TS23: lung Strong Regionally restricted euxassay_003864_11
TS23: bladder Moderate Regionally restricted euxassay_003864_11
TS23: genital tubercle of male Moderate Regionally restricted euxassay_003864_11
TS23: urethra Moderate Regionally restricted euxassay_003864_11 Originally this result was annotated to a male-specific term, but as the specimen was not sexed, it is likely the data annotator intended to use a non-gender specific term.
TS23: heart Strong Regionally restricted euxassay_003864_11
TS23: brain Moderate Single cells euxassay_003864_11
TS23: spinal cord Moderate Single cells euxassay_003864_11
Specimen euxassay_003864_12: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: diencephalon meninges Strong Regionally restricted euxassay_003864_12
TS23: telencephalon meninges Strong Regionally restricted euxassay_003864_12
TS23: midbrain meninges Strong Regionally restricted euxassay_003864_12
TS23: hindbrain meninges Strong Regionally restricted euxassay_003864_12
TS23: spinal cord meninges Strong Regionally restricted euxassay_003864_12
TS23: embryo mesenchyme Moderate Regionally restricted euxassay_003864_12
TS23: olfactory epithelium Strong Regionally restricted euxassay_003864_12
TS23: physiological umbilical hernia epidermis Strong Regionally restricted euxassay_003864_12
TS23: adenohypophysis Strong Regionally restricted euxassay_003864_12
TS23: lower jaw incisor Strong Regionally restricted euxassay_003864_12
TS23: upper jaw incisor Strong Regionally restricted euxassay_003864_12
TS23: tongue Moderate Regionally restricted euxassay_003864_12
TS23: thymus primordium Moderate Regionally restricted euxassay_003864_12
TS23: lung Strong Regionally restricted euxassay_003864_12
TS23: urethra Moderate Regionally restricted euxassay_003864_12 Originally this result was annotated to a male-specific term, but as the specimen was not sexed, it is likely the data annotator intended to use a non-gender specific term.
TS23: genital tubercle of male Moderate Regionally restricted euxassay_003864_12
TS23: bladder Moderate Regionally restricted euxassay_003864_12
TS23: heart Strong Regionally restricted euxassay_003864_12
TS23: brain Moderate Single cells euxassay_003864_12
Specimen euxassay_003864_13: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: diencephalon meninges Strong Regionally restricted euxassay_003864_13
TS23: telencephalon meninges Strong Regionally restricted euxassay_003864_13
TS23: hindbrain meninges Strong Regionally restricted euxassay_003864_13
TS23: midbrain meninges Strong Regionally restricted euxassay_003864_13
TS23: embryo mesenchyme Moderate Regionally restricted euxassay_003864_13
TS23: olfactory epithelium Strong Regionally restricted euxassay_003864_13
TS23: physiological umbilical hernia epidermis Strong Regionally restricted euxassay_003864_13
TS23: adenohypophysis Strong Regionally restricted euxassay_003864_13
TS23: tongue Moderate Regionally restricted euxassay_003864_13
TS23: lung Strong Regionally restricted euxassay_003864_13
TS23: genital tubercle of male Moderate Regionally restricted euxassay_003864_13
TS23: metanephros Moderate Regionally restricted euxassay_003864_13
TS23: heart Moderate Regionally restricted euxassay_003864_13
TS23: brain Moderate Single cells euxassay_003864_13
Specimen euxassay_003864_14: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: diencephalon meninges Strong Regionally restricted euxassay_003864_14
TS23: telencephalon meninges Strong Regionally restricted euxassay_003864_14
TS23: hindbrain meninges Strong Regionally restricted euxassay_003864_14
TS23: midbrain meninges Strong Regionally restricted euxassay_003864_14
TS23: embryo mesenchyme Moderate Regionally restricted euxassay_003864_14
TS23: olfactory epithelium Strong Regionally restricted euxassay_003864_14
TS23: nasal cavity respiratory epithelium Strong Regionally restricted euxassay_003864_14
TS23: naris Strong Regionally restricted euxassay_003864_14
TS23: physiological umbilical hernia epidermis Strong Regionally restricted euxassay_003864_14
TS23: adenohypophysis Strong Regionally restricted euxassay_003864_14
TS23: tongue Moderate Regionally restricted euxassay_003864_14
TS23: cochlea Strong Regionally restricted euxassay_003864_14
TS23: lung Strong Regionally restricted euxassay_003864_14
TS23: metanephros Moderate Regionally restricted euxassay_003864_14
TS23: genital tubercle of male Moderate Regionally restricted euxassay_003864_14
TS23: heart Moderate Regionally restricted euxassay_003864_14
TS23: brain Moderate Single cells euxassay_003864_14
Specimen euxassay_003864_15: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: diencephalon meninges Strong Regionally restricted euxassay_003864_15
TS23: telencephalon meninges Strong Regionally restricted euxassay_003864_15
TS23: hindbrain meninges Strong Regionally restricted euxassay_003864_15
TS23: midbrain meninges Strong Regionally restricted euxassay_003864_15
TS23: embryo mesenchyme Moderate Regionally restricted euxassay_003864_15
TS23: nasal cavity respiratory epithelium Strong Regionally restricted euxassay_003864_15
TS23: physiological umbilical hernia epidermis Strong Regionally restricted euxassay_003864_15
TS23: tongue Moderate Regionally restricted euxassay_003864_15
TS23: cochlea Strong Regionally restricted euxassay_003864_15
TS23: lung Strong Regionally restricted euxassay_003864_15
TS23: metanephros Moderate Regionally restricted euxassay_003864_15
TS23: heart Moderate Regionally restricted euxassay_003864_15
TS23: brain Moderate Single cells euxassay_003864_15
Specimen euxassay_003864_16: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: diencephalon meninges Strong Regionally restricted euxassay_003864_16
TS23: telencephalon meninges Strong Regionally restricted euxassay_003864_16
TS23: hindbrain meninges Strong Regionally restricted euxassay_003864_16
TS23: midbrain meninges Strong Regionally restricted euxassay_003864_16
TS23: embryo mesenchyme Moderate Regionally restricted euxassay_003864_16
TS23: olfactory epithelium Strong Regionally restricted euxassay_003864_16
TS23: nasal cavity respiratory epithelium Strong Regionally restricted euxassay_003864_16
TS23: physiological umbilical hernia epidermis Strong Regionally restricted euxassay_003864_16
TS23: tongue Moderate Regionally restricted euxassay_003864_16
TS23: cochlea Strong Regionally restricted euxassay_003864_16
TS23: lung Strong Regionally restricted euxassay_003864_16
TS23: brain Moderate Single cells euxassay_003864_16
Specimen euxassay_003864_17: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: diencephalon meninges Strong Regionally restricted euxassay_003864_17
TS23: telencephalon meninges Strong Regionally restricted euxassay_003864_17
TS23: hindbrain meninges Strong Regionally restricted euxassay_003864_17
TS23: midbrain meninges Strong Regionally restricted euxassay_003864_17
TS23: embryo mesenchyme Moderate Regionally restricted euxassay_003864_17
TS23: olfactory epithelium Strong Regionally restricted euxassay_003864_17
TS23: nasal cavity respiratory epithelium Strong Regionally restricted euxassay_003864_17
TS23: physiological umbilical hernia epidermis Strong Regionally restricted euxassay_003864_17
TS23: cochlea Strong Regionally restricted euxassay_003864_17
TS23: lung Strong Regionally restricted euxassay_003864_17
TS23: brain Moderate Single cells euxassay_003864_17
Specimen euxassay_003864_18: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon meninges Strong Regionally restricted euxassay_003864_18
TS23: hindbrain meninges Strong Regionally restricted euxassay_003864_18
TS23: embryo mesenchyme Moderate Regionally restricted euxassay_003864_18
TS23: olfactory epithelium Strong Regionally restricted euxassay_003864_18
TS23: nasal cavity respiratory epithelium Strong Regionally restricted euxassay_003864_18
TS23: naris Strong Regionally restricted euxassay_003864_18
TS23: physiological umbilical hernia epidermis Strong Regionally restricted euxassay_003864_18
TS23: cochlea Strong Regionally restricted euxassay_003864_18
TS23: lung Strong Regionally restricted euxassay_003864_18
TS23: brain Moderate Single cells euxassay_003864_18
Specimen euxassay_003864_19: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: hindbrain meninges Strong Regionally restricted euxassay_003864_19
TS23: telencephalon meninges Strong Regionally restricted euxassay_003864_19
TS23: embryo mesenchyme Moderate Regionally restricted euxassay_003864_19
TS23: olfactory epithelium Strong Regionally restricted euxassay_003864_19
TS23: physiological umbilical hernia epidermis Strong Regionally restricted euxassay_003864_19
TS23: upper jaw molar Strong Regionally restricted euxassay_003864_19
TS23: lower jaw molar Strong Regionally restricted euxassay_003864_19
TS23: cochlea Strong Regionally restricted euxassay_003864_19
TS23: lung Strong Regionally restricted euxassay_003864_19
TS23: brain Moderate Single cells euxassay_003864_19
Specimen euxassay_003864_20: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon meninges Strong Regionally restricted euxassay_003864_20
TS23: embryo mesenchyme Moderate Regionally restricted euxassay_003864_20
TS23: olfactory epithelium Strong Regionally restricted euxassay_003864_20
TS23: physiological umbilical hernia epidermis Strong Regionally restricted euxassay_003864_20
TS23: pharyngo-tympanic tube Strong Regionally restricted euxassay_003864_20
TS23: cochlea Strong Regionally restricted euxassay_003864_20
TS23: lung Strong Regionally restricted euxassay_003864_20
TS23: brain Moderate Single cells euxassay_003864_20
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
Warranty Disclaimer, Privacy Notice, Licensing, & Copyright
Send questions and comments to User Support. 		last database update
05/07/2024
MGI 6.23 		The Jackson Laboratory