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Gene Expression Data
Assay Details
Assay
Reference: J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
Assay type: RNA in situ
MGI Accession ID: MGI:4823575
Gene symbol: Cacna1e
Gene name: calcium channel, voltage-dependent, R type, alpha 1E subunit
Probe: T35111
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Assay notes: Cryosections of fresh frozen material were fixed in 4% paraformaldehyde for 20 min. before further processing. A tyramide-biotin/streptavidin amplification step was included in the in situ hybridization procedure.
Results
Specimen euxassay_006436_01: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: cerebral cortex marginal layer Strong Regionally restricted euxassay_006436_01
TS23: cerebral cortex mantle layer Strong Regionally restricted euxassay_006436_01
Specimen euxassay_006436_02: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: cerebral cortex marginal layer Strong Regionally restricted euxassay_006436_02
TS23: cerebral cortex mantle layer Strong Regionally restricted euxassay_006436_02
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_006436_02
Specimen euxassay_006436_03: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: cerebral cortex marginal layer Strong Regionally restricted euxassay_006436_03
TS23: cerebral cortex mantle layer Strong Regionally restricted euxassay_006436_03
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_006436_03
TS23: trigeminal ganglion Moderate Single cells euxassay_006436_03
Specimen euxassay_006436_04: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: cerebral cortex mantle layer Strong Regionally restricted euxassay_006436_04
TS23: cerebral cortex marginal layer Strong Regionally restricted euxassay_006436_04
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_006436_04
TS23: trigeminal ganglion Moderate Single cells euxassay_006436_04
Specimen euxassay_006436_05: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: cerebral cortex marginal layer Strong Regionally restricted euxassay_006436_05
TS23: cerebral cortex mantle layer Strong Regionally restricted euxassay_006436_05
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_006436_05
TS23: trigeminal ganglion Moderate Single cells euxassay_006436_05
Specimen euxassay_006436_06: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: cerebral cortex marginal layer Strong Regionally restricted euxassay_006436_06
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_006436_06
TS23: trigeminal ganglion Moderate Single cells euxassay_006436_06
TS23: vestibulo-cochlear ganglion Moderate Regionally restricted euxassay_006436_06
Specimen euxassay_006436_07: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: cerebral cortex marginal layer Strong Regionally restricted euxassay_006436_07
TS23: telencephalon mantle layer Weak Regionally restricted euxassay_006436_07
TS23: pons mantle layer Moderate Regionally restricted euxassay_006436_07
TS23: vestibulo-cochlear ganglion Strong Regionally restricted euxassay_006436_07
TS23: trigeminal ganglion Moderate Single cells euxassay_006436_07
TS23: glossopharyngeal ganglion Moderate Single cells euxassay_006436_07
Specimen euxassay_006436_08: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: cerebral cortex marginal layer Strong Regionally restricted euxassay_006436_08
TS23: pons mantle layer Moderate Regionally restricted euxassay_006436_08
TS23: trigeminal ganglion Moderate Single cells euxassay_006436_08
TS23: glossopharyngeal ganglion Moderate Single cells euxassay_006436_08
TS23: vestibulo-cochlear ganglion Strong Regionally restricted euxassay_006436_08
Specimen euxassay_006436_09: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: olfactory cortex marginal layer Strong Regionally restricted euxassay_006436_09
TS23: cerebral cortex marginal layer Strong Regionally restricted euxassay_006436_09
TS23: thalamus mantle layer Moderate Regionally restricted euxassay_006436_09
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_006436_09 facial motor nucleus
TS23: trigeminal ganglion Moderate Single cells euxassay_006436_09
TS23: dorsal root ganglion Moderate Single cells euxassay_006436_09
Specimen euxassay_006436_10: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: olfactory cortex marginal layer Strong Regionally restricted euxassay_006436_10
TS23: cerebral cortex marginal layer Strong Regionally restricted euxassay_006436_10
TS23: thalamus mantle layer Moderate Regionally restricted euxassay_006436_10
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_006436_10 facial motor nucleus
TS23: spinal cord ventricular layer Strong Single cells euxassay_006436_10
TS23: ventral grey horn Strong Single cells euxassay_006436_10
TS23: dorsal root ganglion Moderate Single cells euxassay_006436_10
Specimen euxassay_006436_11: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: cerebral cortex marginal layer Strong Regionally restricted euxassay_006436_11
TS23: olfactory cortex marginal layer Strong Regionally restricted euxassay_006436_11
TS23: thalamus mantle layer Moderate Regionally restricted euxassay_006436_11
TS23: spinal cord ventricular layer Strong Single cells euxassay_006436_11
TS23: ventral grey horn Strong Single cells euxassay_006436_11
Specimen euxassay_006436_12: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: cerebral cortex marginal layer Strong Regionally restricted euxassay_006436_12
TS23: olfactory cortex marginal layer Strong Regionally restricted euxassay_006436_12
Specimen euxassay_006436_13: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: cerebral cortex marginal layer Strong Regionally restricted euxassay_006436_13
TS23: thalamus mantle layer Moderate Regionally restricted euxassay_006436_13
TS23: spinal cord ventricular layer Strong Single cells euxassay_006436_13
Specimen euxassay_006436_14: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: cerebral cortex marginal layer Strong Regionally restricted euxassay_006436_14
TS23: olfactory cortex marginal layer Strong Regionally restricted euxassay_006436_14
TS23: thalamus mantle layer Moderate Regionally restricted euxassay_006436_14
TS23: spinal cord ventricular layer Strong Single cells euxassay_006436_14
TS23: ventral grey horn Strong Single cells euxassay_006436_14
TS23: dorsal root ganglion Moderate Single cells euxassay_006436_14
Specimen euxassay_006436_15: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: cerebral cortex marginal layer Strong Regionally restricted euxassay_006436_15
TS23: olfactory cortex marginal layer Strong Regionally restricted euxassay_006436_15
TS23: thalamus mantle layer Moderate Regionally restricted euxassay_006436_15
TS23: ventral grey horn Strong Single cells euxassay_006436_15
TS23: dorsal root ganglion Moderate Single cells euxassay_006436_15
Specimen euxassay_006436_16: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: cerebral cortex marginal layer Strong Regionally restricted euxassay_006436_16
TS23: olfactory cortex marginal layer Strong Regionally restricted euxassay_006436_16
TS23: thalamus mantle layer Weak Regionally restricted euxassay_006436_16
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_006436_16 facial motor nucleus
TS23: ventral grey horn Strong Single cells euxassay_006436_16
TS23: dorsal root ganglion Moderate Single cells euxassay_006436_16
Specimen euxassay_006436_17: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: cerebral cortex marginal layer Strong Regionally restricted euxassay_006436_17
TS23: olfactory cortex marginal layer Strong Regionally restricted euxassay_006436_17
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_006436_17 facial motor nucleus
TS23: pons mantle layer Moderate Regionally restricted euxassay_006436_17
TS23: trigeminal ganglion Moderate Single cells euxassay_006436_17
TS23: vestibulo-cochlear ganglion Strong Regionally restricted euxassay_006436_17
Specimen euxassay_006436_18: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: cerebral cortex marginal layer Strong Regionally restricted euxassay_006436_18
TS23: pons mantle layer Moderate Regionally restricted euxassay_006436_18
TS23: vestibulo-cochlear ganglion Strong Regionally restricted euxassay_006436_18
TS23: trigeminal ganglion Moderate Single cells euxassay_006436_18
TS23: glossopharyngeal ganglion Moderate Single cells euxassay_006436_18
Specimen euxassay_006436_19: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: cerebral cortex marginal layer Strong Regionally restricted euxassay_006436_19
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_006436_19
TS23: pons mantle layer Moderate Regionally restricted euxassay_006436_19
TS23: trigeminal ganglion Moderate Single cells euxassay_006436_19
TS23: glossopharyngeal ganglion Moderate Single cells euxassay_006436_19
TS23: vestibulo-cochlear ganglion Strong Regionally restricted euxassay_006436_19
Specimen euxassay_006436_20: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: cerebral cortex marginal layer Strong Regionally restricted euxassay_006436_20
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_006436_20
TS23: trigeminal ganglion Moderate Single cells euxassay_006436_20
Specimen euxassay_006436_21: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: cerebral cortex marginal layer Strong Regionally restricted euxassay_006436_21
TS23: cerebral cortex mantle layer Strong Regionally restricted euxassay_006436_21
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_006436_21
TS23: trigeminal ganglion Moderate Single cells euxassay_006436_21
Specimen euxassay_006436_22: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: cerebral cortex marginal layer Strong Regionally restricted euxassay_006436_22
TS23: cerebral cortex mantle layer Strong Regionally restricted euxassay_006436_22
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_006436_22
TS23: trigeminal ganglion Moderate Single cells euxassay_006436_22
Specimen euxassay_006436_23: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: cerebral cortex marginal layer Strong Regionally restricted euxassay_006436_23
TS23: cerebral cortex mantle layer Strong Regionally restricted euxassay_006436_23
Specimen euxassay_006436_24: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: cerebral cortex marginal layer Strong Regionally restricted euxassay_006436_24
TS23: cerebral cortex mantle layer Strong Regionally restricted euxassay_006436_24
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
05/07/2024
MGI 6.23 		The Jackson Laboratory