About   Help   FAQ
Gene Expression Data
Assay Details
Assay
Reference: J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
Assay type: RNA in situ
MGI Accession ID: MGI:4823301
Gene symbol: Atp11a
Gene name: ATPase, class VI, type 11A
Probe: T50128
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Assay notes: Cryosections of fresh frozen material were fixed in 4% paraformaldehyde for 20 min. before further processing. A tyramide-biotin/streptavidin amplification step was included in the in situ hybridization procedure.
Results
Specimen euxassay_018926_01: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Weak Uniform euxassay_018926_01
Specimen euxassay_018926_02: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon ventricular layer Weak Uniform euxassay_018926_02
Specimen euxassay_018926_03: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Weak Regionally restricted euxassay_018926_03
TS23: telencephalon ventricular layer Weak Uniform euxassay_018926_03
Specimen euxassay_018926_04: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Weak Regionally restricted euxassay_018926_04
TS23: telencephalon ventricular layer Weak Uniform euxassay_018926_04
TS23: metencephalon part of 4th ventricle choroid plexus Weak Regionally restricted euxassay_018926_04
Specimen euxassay_018926_05: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Weak Regionally restricted euxassay_018926_05
TS23: telencephalon ventricular layer Weak Uniform euxassay_018926_05
TS23: metencephalon part of 4th ventricle choroid plexus Weak Regionally restricted euxassay_018926_05
Specimen euxassay_018926_06: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Weak Regionally restricted euxassay_018926_06
TS23: midgut Moderate Regionally restricted euxassay_018926_06
TS23: telencephalon ventricular layer Weak Uniform euxassay_018926_06
TS23: metencephalon part of 4th ventricle choroid plexus Weak Regionally restricted euxassay_018926_06
Specimen euxassay_018926_07: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Weak Regionally restricted euxassay_018926_07
TS23: glossopharyngeal ganglion Weak Regionally restricted euxassay_018926_07
TS23: olfactory epithelium Moderate Regionally restricted euxassay_018926_07
TS23: midgut Moderate Regionally restricted euxassay_018926_07
TS23: submandibular gland primordium Weak Regionally restricted euxassay_018926_07
TS23: telencephalon ventricular layer Weak Uniform euxassay_018926_07
TS23: metencephalon part of 4th ventricle choroid plexus Weak Regionally restricted euxassay_018926_07
Specimen euxassay_018926_08: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Weak Regionally restricted euxassay_018926_08
TS23: glossopharyngeal ganglion Weak Regionally restricted euxassay_018926_08
TS23: olfactory epithelium Moderate Regionally restricted euxassay_018926_08
TS23: midgut Strong Regionally restricted euxassay_018926_08
TS23: submandibular gland primordium Weak Regionally restricted euxassay_018926_08
TS23: telencephalon ventricular layer Weak Uniform euxassay_018926_08
TS23: metencephalon part of 4th ventricle choroid plexus Weak Regionally restricted euxassay_018926_08
Specimen euxassay_018926_09: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Weak Regionally restricted euxassay_018926_09
TS23: olfactory epithelium Weak Regionally restricted euxassay_018926_09
TS23: midgut Strong Regionally restricted euxassay_018926_09
TS23: telencephalon ventricular layer Weak Uniform euxassay_018926_09
TS23: metencephalon part of 4th ventricle choroid plexus Weak Regionally restricted euxassay_018926_09
Specimen euxassay_018926_10: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: olfactory epithelium Weak Regionally restricted euxassay_018926_10
TS23: midgut Strong Regionally restricted euxassay_018926_10
TS23: telencephalon ventricular layer Weak Uniform euxassay_018926_10
TS23: metencephalon part of 4th ventricle choroid plexus Weak Regionally restricted euxassay_018926_10
Specimen euxassay_018926_11: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: olfactory epithelium Weak Regionally restricted euxassay_018926_11
TS23: midgut Strong Regionally restricted euxassay_018926_11
TS23: telencephalon ventricular layer Weak Uniform euxassay_018926_11
TS23: metencephalon part of 4th ventricle choroid plexus Weak Regionally restricted euxassay_018926_11
Specimen euxassay_018926_12: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: olfactory epithelium Weak Regionally restricted euxassay_018926_12
TS23: midgut Strong Regionally restricted euxassay_018926_12
TS23: thyroid gland Strong Regionally restricted euxassay_018926_12
TS23: bladder Moderate Regionally restricted euxassay_018926_12
TS23: telencephalon ventricular layer Weak Uniform euxassay_018926_12
TS23: metencephalon part of 4th ventricle choroid plexus Weak Regionally restricted euxassay_018926_12
Specimen euxassay_018926_13: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: midgut Strong Regionally restricted euxassay_018926_13
TS23: bladder Moderate Regionally restricted euxassay_018926_13
TS23: urethra Weak Regionally restricted euxassay_018926_13 Originally this result was annotated to a male-specific term, but as the specimen was not sexed, it is likely the data annotator intended to use a non-gender specific term.
TS23: metencephalon part of 4th ventricle choroid plexus Weak Regionally restricted euxassay_018926_13
Specimen euxassay_018926_14: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: midgut Strong Regionally restricted euxassay_018926_14
TS23: bladder Moderate Regionally restricted euxassay_018926_14
TS23: urethra Weak Regionally restricted euxassay_018926_14 Originally this result was annotated to a male-specific term, but as the specimen was not sexed, it is likely the data annotator intended to use a non-gender specific term.
TS23: metencephalon part of 4th ventricle choroid plexus Weak Regionally restricted euxassay_018926_14
TS23: nucleus pulposus Weak Regionally restricted euxassay_018926_14
Specimen euxassay_018926_15: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: olfactory epithelium Weak Regionally restricted euxassay_018926_15
TS23: midgut Strong Regionally restricted euxassay_018926_15
TS23: telencephalon ventricular layer Weak Uniform euxassay_018926_15
TS23: metencephalon part of 4th ventricle choroid plexus Weak Regionally restricted euxassay_018926_15
TS23: nucleus pulposus Weak Regionally restricted euxassay_018926_15
Specimen euxassay_018926_16: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: olfactory epithelium Weak Regionally restricted euxassay_018926_16
TS23: midgut Strong Regionally restricted euxassay_018926_16
TS23: thyroid gland Moderate Regionally restricted euxassay_018926_16
TS23: telencephalon ventricular layer Weak Uniform euxassay_018926_16
TS23: metencephalon part of 4th ventricle choroid plexus Weak Regionally restricted euxassay_018926_16
TS23: nucleus pulposus Weak Regionally restricted euxassay_018926_16
Specimen euxassay_018926_17: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: olfactory epithelium Weak Regionally restricted euxassay_018926_17
TS23: midgut Strong Regionally restricted euxassay_018926_17
TS23: telencephalon ventricular layer Weak Uniform euxassay_018926_17
Specimen euxassay_018926_18: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Weak Regionally restricted euxassay_018926_18
TS23: olfactory epithelium Weak Regionally restricted euxassay_018926_18
TS23: midgut Strong Regionally restricted euxassay_018926_18
TS23: submandibular gland primordium Weak Regionally restricted euxassay_018926_18
TS23: telencephalon ventricular layer Weak Uniform euxassay_018926_18
TS23: metencephalon part of 4th ventricle choroid plexus Weak Regionally restricted euxassay_018926_18
Specimen euxassay_018926_19: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Weak Regionally restricted euxassay_018926_19
TS23: glossopharyngeal ganglion Weak Regionally restricted euxassay_018926_19
TS23: midgut Strong Regionally restricted euxassay_018926_19
TS23: submandibular gland primordium Weak Regionally restricted euxassay_018926_19
TS23: telencephalon ventricular layer Weak Uniform euxassay_018926_19
TS23: metencephalon part of 4th ventricle choroid plexus Weak Regionally restricted euxassay_018926_19
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
Warranty Disclaimer, Privacy Notice, Licensing, & Copyright
Send questions and comments to User Support. 		last database update
05/14/2024
MGI 6.23 		The Jackson Laboratory