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Gene Expression Data
Assay Details
Assay
Reference: J:85714 Tahayato A, et al., Cyp26C1 encodes a novel retinoic acid-metabolizing enzyme expressed in the hindbrain, inner ear, first branchial arch and tooth buds during murine development. Gene Expr Patterns. 2003 Aug;3(4):449-54
Assay type: RNA in situ
MGI Accession ID: MGI:3026698
Gene symbol: Cyp26c1
Gene name: cytochrome P450, family 26, subfamily c, polypeptide 1
Probe: Cyp26c1 cDNA
Probe preparation: Antisense labelled with digoxigenin RNA
Results
Specimen Not Shown: embryonic day 7.5 (more )
Structure Level Pattern Image Note
TS11: amnion Present
Specimen 2A: embryonic day 8.0 (more )
Structure Level Pattern Image Note
TS12: anterior pro-rhombomere Present Regionally restricted 2A Expression is in prospective rhombomere 2 and 4.
TS12: 1st branchial arch Present Regionally restricted 2A Expression is in the rostral portion.
TS12: head mesenchyme Strong Regionally restricted 2A Expression is in the lateral mesenchyme flanking prospective rhombomere 3 and extends at lower levels both rostrally and caudally in the lateral mesenchyme.
Specimen 2B: embryonic day 8.0 (more )
Structure Level Pattern Image Note
TS12: anterior pro-rhombomere Present Regionally restricted 2B Expression is in prospective rhombomere 2 and 4.
TS12: 1st branchial arch Present Regionally restricted 2B Expression is in the rostral portion.
TS12: head mesenchyme Strong Regionally restricted 2B Expression is in the lateral mesenchyme flanking prospective rhombomere 3 and extends at lower levels both rostrally and caudally in the lateral mesenchyme.
Specimen 2C: embryonic day 8.0 (more )
Structure Level Pattern Image Note
TS12: anterior pro-rhombomere Present Regionally restricted 2C C1
Specimen 2E: embryonic day 8.5 (more )
Structure Level Pattern Image Note
TS13: rhombomere 2 Present 2E
TS13: rhombomere 4 Absent 2E
TS13: 1st branchial arch Present Regionally restricted 2E Expression is in the rostral portion.
TS13: head mesenchyme Present Regionally restricted 2E Expression is in the lateral mesenchyme flanking prospective rhombomere 3 and extends at lower levels both rostrally and caudally in the lateral mesenchyme.
Specimen 2F: embryonic day 8.5 (more )
Structure Level Pattern Image Note
TS13: rhombomere 2 Present 2F
TS13: rhombomere 4 Absent 2F
TS13: 1st branchial arch Present Regionally restricted 2F Expression is in the rostral portion.
TS13: head mesenchyme Present Regionally restricted 2F Expression is in the lateral mesenchyme flanking prospective rhombomere 3 and extends at lower levels both rostrally and caudally in the lateral mesenchyme.
Specimen 2G: embryonic day 8.5 (more )
Structure Level Pattern Image Note
TS13: 1st branchial arch ectoderm Present 2G
TS13: future hindbrain Present Regionally restricted 2G Expression is in the mid portion of the neuroepithelium.
TS13: buccopharyngeal membrane Present 2G
Specimen 2H: embryonic day 8.5 (more )
Structure Level Pattern Image Note
TS13: head mesenchyme Present Regionally restricted 2H Expression is in the mesenchyme adjacent to rhombomere 3.
Specimen 3A: embryonic day 9.5 (more )
Structure Level Pattern Image Note
TS15: 1st branchial arch mandibular component Present 3A
TS15: 1st branchial arch maxillary component Present 3A
TS15: branchial arch Present Regionally restricted 3A Expression is in the lateral epibranchial placodes.
TS15: rhombomere 2 Present 3A
TS15: head mesenchyme Strong Regionally restricted 3A Expression is in the cervical mesenchyme caudal to the otic vesicle.
Specimen 3B: embryonic day 9.5 (more )
Structure Level Pattern Image Note
TS15: 1st branchial arch mandibular component Present 3B
TS15: 1st branchial arch maxillary component Present 3B
TS15: branchial arch Present Regionally restricted 3B Expression is in the lateral epibranchial placodes.
TS15: rhombomere 2 Present 3B
TS15: head mesenchyme Strong Regionally restricted 3B Expression is in the cervical mesenchyme caudal to the otic vesicle.
Specimen 3C: embryonic day 9.5 (more )
Structure Level Pattern Image Note
TS15: 1st branchial arch mandibular component Present 3C
TS15: 1st branchial arch maxillary component Present 3C
TS15: branchial arch Present Regionally restricted 3C Expression is in the lateral epibranchial placodes.
TS15: rhombomere 2 Present 3C
Specimen 3D: embryonic day 9.5 (more )
Structure Level Pattern Image Note
TS15: 1st branchial arch maxillary component ectoderm Present Regionally restricted 3D Expression is in the ventral maxillary ectoderm.
TS15: branchial arch Present Regionally restricted 3D Expression is in the lateral epibranchial placodes.
TS15: rhombomere 2 Present 3D
Specimen 3E: embryonic day 9.5 (more )
Structure Level Pattern Image Note
TS15: 1st branchial arch mandibular component ectoderm Present Regionally restricted 3E Expression is in the inner and outer mandibular ectoderm.
TS15: 1st branchial arch mandibular component mesenchyme Present Regionally restricted 3E Expression is in the area just below the ectodermal expression.
TS15: branchial arch Present Regionally restricted 3E Expression is in the lateral epibranchial placodes.
TS15: rhombomere 2 Present 3E
Specimen 3F: embryonic day 9.5 (more )
Structure Level Pattern Image Note
TS15: 1st branchial arch mandibular component Present 3F
TS15: 1st branchial arch maxillary component Present 3F
TS15: branchial arch Present Regionally restricted 3F Expression is in the lateral epibranchial placodes.
TS15: rhombomere 2 Present 3F
TS15: head mesenchyme Strong Regionally restricted 3F Expression is in the cervical mesenchyme caudal to the otic vesicle.
Specimen 3H: embryonic day 10.5 (more )
Structure Level Pattern Image Note
TS17: head mesenchyme Present Regionally restricted 3H Expression is in a few cells ventral to the pontine flexure.
TS17: 1st branchial arch maxillary component Present Regionally restricted 3H Expression is ventral.
Specimen 3I: embryonic day 10.5 (more )
Structure Level Pattern Image Note
TS17: 1st branchial arch maxillary component Present Regionally restricted 3I Expression is ventral.
Specimen 3J: embryonic day 11.5 (more )
Structure Level Pattern Image Note
TS19: head mesenchyme Present Regionally restricted 3J Expression is in a narrow band in the lateral cervical mesenchyme.
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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05/14/2024
MGI 6.23 		The Jackson Laboratory