About   Help   FAQ
Gene Expression Data
Assay Details
Assay
Reference: J:80502 Reymond A, et al., Human chromosome 21 gene expression atlas in the mouse. Nature. 2002 Dec 5;420(6915):582-6
Assay type: RNA in situ
MGI Accession ID: MGI:2666406
Gene symbol: Col6a1
Gene name: collagen, type VI, alpha 1
Probe: NIA clone H3151F07
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Results
Specimen Col6a1 10.5dpc: embryonic day 10.5 (more )
Structure Level Pattern Image Note
TS17: brain Absent 36-COL6A1e10.5
TS17: future spinal cord Present 36-COL6A1e10.5
TS17: eye Present 36-COL6A1e10.5
TS17: otocyst Present 36-COL6A1e10.5
TS17: dorsal root ganglion Present 36-COL6A1e10.5
TS17: branchial arch Present 36-COL6A1e10.5
TS17: heart Present 36-COL6A1e10.5
TS17: gut Present 36-COL6A1e10.5
TS17: mesonephros Present 36-COL6A1e10.5
TS17: limb Present 36-COL6A1e10.5
TS17: surface ectoderm Present 36-COL6A1e10.5
Specimen Col6a1 14.5dpc: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS22: forebrain Absent 1E4_C609
TS22: midbrain Absent 1E4_C609
TS22: hindbrain Strong Regionally restricted 1E4_C609
TS22: cerebellum Absent 1E4_C609
TS22: spinal cord Strong Regionally restricted 1E4_C609
TS22: cranial ganglion Absent 1E4_C609
TS22: dorsal root ganglion Absent 1E4_C609
TS22: parasympathetic nervous system Absent 1E4_C609
TS22: eye Absent 1E4_C609
TS22: olfactory epithelium Absent 1E4_C609
TS22: cochlea Absent 1E4_C609
TS22: skeleton Absent 1E4_C609
TS22: lung Absent 1E4_C609
TS22: heart atrium Strong Regionally restricted 1E4_C609
TS22: heart ventricle Strong Regionally restricted 1E4_C609
TS22: arterial system Absent 1E4_C609
TS22: gut Absent 1E4_C609
TS22: bladder Absent 1E4_C609
TS22: metanephros Strong Regionally restricted 1E4_C609
TS22: testis Absent 1E4_C609
TS22: ovary Absent 1E4_C609
TS22: salivary gland Absent 1E4_C609
TS22: spleen primordium Absent 1E4_C609
TS22: pancreas Absent 1E4_C609
TS22: adrenal gland Strong Regionally restricted 1E4_C609
TS22: thyroid gland Absent 1E4_C609
TS22: thymus primordium Strong Regionally restricted 1E4_C609
TS22: liver Absent 1E4_C609
TS22: skin Absent 1E4_C609
TS22: vibrissa epidermal component Absent 1E4_C609
TS22: skeletal muscle Absent 1E4_C609
TS22: embryo mesenchyme Absent 1E4_C609
TS22: tongue Absent 1E4_C609
TS22: limb Absent 1E4_C609
TS22: tail Absent 1E4_C609
TS22: choroid plexus Absent 1E4_C609
TS22: mitral valve Present 3cc Col6a1 E14.5
TS22: pericardium Present 3cc Col6a1 E14.5
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
Warranty Disclaimer, Privacy Notice, Licensing, & Copyright
Send questions and comments to User Support. 		last database update
05/28/2024
MGI 6.13 		The Jackson Laboratory