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Gene Expression Data
Assay Details
Assay
Reference: J:21621 Chang DT, et al., Products, genetic linkage and limb patterning activity of a murine hedgehog gene. Development. 1994 Nov;120(11):3339-53
Assay type: RNA in situ
MGI Accession ID: MGI:2137954
Gene symbol: Shh
Gene name: sonic hedgehog
Probe: pD7c8.1
Probe preparation: Antisense labelled with P33 RNA
Visualized with: Autoradiography
Results
Specimen 3B: embryonic day 7.5 (more )
Structure Level Pattern Image Note
TS11: embryo mesoderm Present Regionally restricted 3B Present at the anterior midline in the axial mesoderm. No expression was seen in other embryonic tissues.
TS11: embryo ectoderm Absent 3B Absent from the ectoderm overlying the anterior midline mesoderm.

Specimen 3C: embryonic day 7.5 (more )
Structure Level Pattern Image Note
TS11: embryo mesoderm Present Regionally restricted 3C Present at the anterior midline in the axial mesoderm. No expression was seen in other embryonic tissues.
TS11: embryo ectoderm Absent 3C Absent from the anterior midline ectoderm.

Specimen Not shown: embryonic day 7.5 (more )
Structure Level Pattern Image Note
TS11: extraembryonic component Absent

Specimen 3D: embryonic day 7.5 (more )
Structure Level Pattern Image Note
TS11: embryo mesoderm Present Regionally restricted 3D Present at the anterior midline in the axial mesoderm.

Specimen 3E: embryonic day 7.5 (more )
Structure Level Pattern Image Note
TS11: embryo mesoderm Present Regionally restricted 3E Present at the anterior midline in the axial mesoderm.

Specimen 3F: embryonic day 7.5 (more )
Structure Level Pattern Image Note
TS11: embryo mesoderm Present Regionally restricted 3F Present at the anterior midline in the axial mesoderm.

Specimen Not shown: embryonic day 8.5 (more )
Structure Level Pattern Image Note
TS13: embryo mesenchyme Present Regionally restricted Present at the anterior midline in the axial mesoderm.

Specimen 4A,B: embryonic day 9.5 (more )
Structure Level Pattern Image Note
TS15: future midbrain Strong Regionally restricted 4A/B The expression encompasses 40 percent of the ventral neural tube at its maximum extent in the midbrain. Also present in a ring of cells in the ventral surface of the midbrain-diencephalic region.
TS15: diencephalon Present Regionally restricted 4A/B Present in a small patch in the ventral diencephalon at the midline.

Specimen 4C: embryonic day 9.5 (more )
Structure Level Pattern Image Note
TS15: neural tube Strong Regionally restricted 4C Present at the ventral midline of the neural tube caudal to the hindbrain.
TS15: diencephalon Present Regionally restricted 4C Present in the ventral diencephalon and in a ring of cells in the ventral surface of the midbrain-diencephalic region.
TS15: future forebrain Strong Regionally restricted 4C Present in the ventral boundary region of the midbrain/forebrain.
TS15: telencephalon Present 4C The author states that expression is present rostral to the midbrain.T

Specimen 4D: embryonic day 9.5 (more )
Structure Level Pattern Image Note
TS15: neural tube Strong Regionally restricted 4D Present at the ventral midline of the neural tube caudal to the hindbrain. This includes cells adjacent to the optic vesicle.
TS15: diencephalon Present 4D The authors state that expression is present rostral to the midbrain but that it splits and extends bilaterally.
TS15: telencephalon Present 4D The authors state that expression is present rostral to the midbrain but that it splits and extends bilaterally.

Specimen 4E: embryonic day 9.5 (more )
Structure Level Pattern Image Note
TS15: neural tube Strong Regionally restricted 4E Present at the ventral midline of the neural tube caudal to the hindbrain. This includes ventral neural tube cells overlying the pharngeal lumen and in cells adjacent to the optic vesicle.
TS15: diencephalon Present Regionally restricted 4E Present in the ventral diencephalon and in a ring of cells in the ventral surface of the midbrain-diencephalic region. The author states that expression rostral to the midbrain splits and extends bilaterally, reuniting in the ventral midline.
TS15: telencephalon Present Regionally restricted 4E The authors state that expression is present rostral to the midbrain but that it splits and extends bilaterally, reuniting in the ventral midline at the diencephalon.

Specimen 4F: embryonic day 9.5 (more )
Structure Level Pattern Image Note
TS15: neural tube floor plate Strong Uniform 4F

Specimen 4G,H: embryonic day 9.5 (more )
Structure Level Pattern Image Note
TS15: notochord Strong Uniform 4G , 4H
TS15: neural tube floor plate Strong Regionally restricted 4G , 4H Present in the floorplate in pericardiac regions.

Specimen 4I: embryonic day 9.5 (more )
Structure Level Pattern Image Note
TS15: lung Present 4I

Specimen 5A,B: embryonic day 10.5 (more )
Structure Level Pattern Image Note
TS17: neural tube Strong Regionally restricted 5A/B Present in most of the ventral neural tube.
TS17: diencephalon Strong Regionally restricted 5A/B Present in the ventral region.
TS17: notochord Strong Uniform 5A/B
TS17: carina trachea Strong 5A/B

Specimen 5C: embryonic day 10.5 (more )
Structure Level Pattern Image Note
TS17: midbrain lateral wall Present Regionally restricted 5C Present in the ventral epithelium.

Specimen 5D: embryonic day 10.5 (more )
Structure Level Pattern Image Note
TS17: neural tube floor plate Present Uniform 5D
TS17: notochord Strong Uniform 5D

Specimen 5E: embryonic day 10.5 (more )
Structure Level Pattern Image Note
TS17: trachea Present Regionally restricted 5E Present in the epithelia of the tracheal lumen.

Specimen 5F: embryonic day 10.5 (more )
Structure Level Pattern Image Note
TS17: neural tube floor plate Present Uniform 5F
TS17: notochord Strong Uniform 5F
TS17: hindgut epithelium Present 5F

Specimen 5H: embryonic day 10.5 (more )
Structure Level Pattern Image Note
TS17: forelimb bud mesenchyme Present Regionally restricted 5H Expression is present in the mesoderm along the posterior margin of the limb buds. It is absent in the anterior mesoderm of the limb buds.
TS17: forelimb bud apical ectodermal ridge Absent 5H
TS17: forelimb bud ectoderm Absent 5H

Specimen 5I: embryonic day 10.5 (more )
Structure Level Pattern Image Note
TS17: forelimb bud mesenchyme Present Regionally restricted 5I Expression is present in the mesoderm along the posterior margin of the limb buds. It is absent in the anterior mesoderm of the limb buds.
TS17: forelimb bud apical ectodermal ridge Absent 5I
TS17: forelimb bud ectoderm Absent 5I

Specimen 5J: embryonic day 10.5 (more )
Structure Level Pattern Image Note
TS17: forelimb bud mesenchyme Present Regionally restricted 5J Expression is present in the mesoderm along the posterior margin of the limb buds. It is absent in the anterior mesoderm of the limb buds.
TS17: forelimb bud apical ectodermal ridge Absent 5J
TS17: forelimb bud ectoderm Absent 5J

Specimen Not shown: embryonic day 10.5 (more )
Structure Level Pattern Image Note
TS17: foregut Present Regionally restricted Present in the endoderm lining the foregut.
TS17: pharynx Present Regionally restricted Present in the endoderm lining the future pharynx.
TS17: lung Strong Expression is more intense than in the pharynx and foregut.
TS17: hindgut Present
TS17: hindlimb bud mesenchyme Present Regionally restricted Expression is present in the mesoderm along the posterior margin of the limb buds. It is absent in the anterior mesoderm of the limb buds.
TS17: hindlimb bud apical ectodermal ridge Absent
TS17: hindlimb bud ectoderm Absent


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Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
05/07/2024
MGI 6.23
The Jackson Laboratory