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Gene Expression Data
Assay Details
Assay
Reference: J:32272 Gaunt SJ, Mouse homeobox gene transcripts occupy different but overlapping domains in embryonic germ layers and organs: a comparison of Hox-3.1 and Hox-1.5. Development. 1988 May;103(1):135-44
Assay type: RNA in situ
MGI Accession ID: MGI:1345061
Gene symbol: Hoxa3
Gene name: homeobox A3
Probe: Mo-10 probe2
Probe preparation: Antisense labelled with S35 RNA
Visualized with: Autoradiography
Results
Specimen 1B: embryonic day 7.5 (more )
Note: Early 7.5 day embryo.
Structure Level Pattern Image Note
TS10: embryo Absent 1B

Specimen 2B: embryonic day 7.5 (more )
Note: First signs of head fold have appeared; the allantois is well developed.
Structure Level Pattern Image Note
TS11: embryo ectoderm Present Regionally restricted 2B Transcripts were located in the ectoderm and mesoderm layers of the posterior half of the embryo.
TS11: embryo mesoderm Present Regionally restricted 2B Transcripts were located in the ectoderm and mesoderm layers of the posterior half of the embryo.
TS11: allantois Present 2B

Specimen 3B: embryonic day 7.5 (more )
Note: Intermediate 7.5 day embryo
Structure Level Pattern Image Note
TS11: embryo ectoderm Present Regionally restricted 3B Transcripts were detected over the complete posterior half of the ectoderm and mesoderm layers.
TS11: embryo mesoderm Present Regionally restricted 3B Transcripts were detected over the complete posterior half of the ectoderm and mesoderm layers.

Specimen 4B: embryonic day 8.0 (more )
Note: 3 somites; head fold is well developed.
Structure Level Pattern Image Note
TS12: allantois Present 4B
TS12: embryo ectoderm Present Regionally restricted 4B Transcripts were seen in the posterior regions of ectoderm and mesoderm. Both within ectoderm and mesoderm tissues, the anterior limits of transcripts extended anterior to the position of first somite formation.
TS12: embryo mesenchyme Present Regionally restricted 4B Transcripts were seen in the posterior regions of ectoderm and mesoderm. Both within ectoderm and mesoderm tissues, the anterior limits of transcripts extended anterior to the position of first somite formation.

Specimen 5B: embryonic day 8.25 (more )
Note: 8 somites.
Structure Level Pattern Image Note
TS13: somite 02 Present 5B
TS13: somite 03 Present 5B
TS13: somite 04 Present 5B
TS13: somite 05 Present 5B
TS13: somite 06 Present 5B
TS13: somite 07 Present 5B
TS13: somite 08 Present 5B
TS13: future hindbrain Present 5B

Specimen 6D: embryonic day 12.5 (more )
Structure Level Pattern Image Note
TS20: thyroid gland Strong 6D
TS20: pharynx Weak Regionally restricted 6D Less-intense labelling was seen generally over tissue which formed the floor of the pharynx.
TS20: thyroglossal duct Weak 6D
TS20: tongue Absent 6D
TS20: C1 vertebral cartilage condensation Present Regionally restricted 6D Transcripts were clearly present in the most anterior prevertebrae, including prevertebra 1 (C1).All prevertebrae were labelled; prevertebrae 10-14 (T3-T7) are shown.
TS20: T3 vertebral cartilage condensation Present Regionally restricted 6D Transcripts were clearly present in the most anterior prevertebrae, including prevertebra 1 (C1).All prevertebrae were labelled; prevertebrae 10-14 (T3-T7) are shown.
TS20: T4 vertebral cartilage condensation Present Regionally restricted 6D Transcripts were clearly present in the most anterior prevertebrae, including prevertebra 1 (C1).All prevertebrae were labelled; prevertebrae 10-14 (T3-T7) are shown.
TS20: T5 vertebral cartilage condensation Present Regionally restricted 6D Transcripts were clearly present in the most anterior prevertebrae, including prevertebra 1 (C1).All prevertebrae were labelled; prevertebrae 10-14 (T3-T7) are shown.
TS20: T6 vertebral cartilage condensation Present Regionally restricted 6D Transcripts were clearly present in the most anterior prevertebrae, including prevertebra 1 (C1).All prevertebrae were labelled; prevertebrae 10-14 (T3-T7) are shown.
TS20: T7 vertebral cartilage condensation Present Regionally restricted 6D Transcripts were clearly present in the most anterior prevertebrae, including prevertebra 1 (C1).All prevertebrae were labelled; prevertebrae 10-14 (T3-T7) are shown.
TS20: vertebral pre-cartilage condensation Present Regionally restricted 6D Transcripts were clearly present in the most anterior prevertebrae, including prevertebra 1 (C1).All prevertebrae were labelled; prevertebrae 10-14 (T3-T7) are shown.

Specimen 6F: embryonic day 12.5 (more )
Structure Level Pattern Image Note
TS20: nervous system Present Regionally restricted 6F The anterior boundary of expression is within the preotic hindbrain.
TS20: spinal cord Present Graded 6F There is a gradual anterior-to-posterior reduction in the intensity of labelling along the length of the spinal cord.
TS20: C1 vertebral cartilage condensation Present Regionally restricted 6F Transcripts were clearly present in the most anterior prevertebrae, including prevertebra 1 (C1).All prevertebrae were labelled; prevertebrae 10-14 (T3-T7) are shown
TS20: T3 vertebral cartilage condensation Present Regionally restricted 6F Transcripts were clearly present in the most anterior prevertebrae, including prevertebra 1 (C1).All prevertebrae were labelled; prevertebrae 10-14 (T3-T7) are shown
TS20: T4 vertebral cartilage condensation Present Regionally restricted 6F Transcripts were clearly present in the most anterior prevertebrae, including prevertebra 1 (C1).All prevertebrae were labelled; prevertebrae 10-14 (T3-T7) are shown
TS20: T5 vertebral cartilage condensation Present Regionally restricted 6F Transcripts were clearly present in the most anterior prevertebrae, including prevertebra 1 (C1).All prevertebrae were labelled; prevertebrae 10-14 (T3-T7) are shown
TS20: T6 vertebral cartilage condensation Present Regionally restricted 6F Transcripts were clearly present in the most anterior prevertebrae, including prevertebra 1 (C1).All prevertebrae were labelled; prevertebrae 10-14 (T3-T7) are shown
TS20: T7 vertebral cartilage condensation Present Regionally restricted 6F Transcripts were clearly present in the most anterior prevertebrae, including prevertebra 1 (C1).All prevertebrae were labelled; prevertebrae 10-14 (T3-T7) are shown
TS20: lung Present Regionally restricted 6F Transcripts were restricted to mesodermal components and were not detected in the endodermally-derived lining epithelium.

Specimen 6H: embryonic day 12.5 (more )
Structure Level Pattern Image Note
TS20: liver Absent 6H
TS20: mesonephros Present Uniform 6H
TS20: metanephros Present Uniform 6H
TS20: stomach Present Regionally restricted 6H Transcripts were restricted to mesodermal components and were not detected in the endodermally-derived lining epithelium.

Specimen not shown: embryonic day 12.5 (more )
Structure Level Pattern Image Note
TS20: heart Absent


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Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
05/07/2024
MGI 6.23
The Jackson Laboratory