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Gene Expression Data
Assay Details
Assay
Reference: J:11921 Sasaki H, et al., Differential expression of multiple fork head related genes during gastrulation and axial pattern formation in the mouse embryo. Development. 1993 May;118(1):47-59
Assay type: RNA in situ
MGI Accession ID: MGI:1339085
Gene symbol: Foxc1
Gene name: forkhead box C1
Probe: c52
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Results
Specimen 5. A: embryonic day 6.5 (more )
Note: Mid to late primitive streak stage embryo.
Structure Level Pattern Image Note
TS10: embryo Trace Regionally restricted 5A Expression is detected in wedge shaped domains on either side of the primitive streak.

Specimen 5. C, D: embryonic day 7.5 (more )
Note: Early head fold stage embryo. Specimens 5. C and 5. D are ventral and frontal views of the same embryo.
Structure Level Pattern Image Note
TS11: node Weak 5D , 5C
TS11: notochordal plate Weak 5D , 5C

Specimen 5. E: embryonic day 8.0 (more )
Note: Head fold stage embryo.
Structure Level Pattern Image Note
TS12: head paraxial mesenchyme Present Regionally restricted 5E Expression is detected from the anterior paraxial mesoderm to the middle of the primitive streak.
TS12: primitive streak Present Regionally restricted 5E Expression is detected from the anterior paraxial mesoderm to the middle of the primitive streak.
TS12: trunk paraxial mesenchyme Present Regionally restricted 5E Expression is detected from the anterior paraxial mesoderm to the middle of the primitive streak.

Specimen 5. F: embryonic day 8.5 (more )
Structure Level Pattern Image Note
TS13: future brain Present Regionally restricted 5F Expression is detected on either side of the midline from head to tail.
TS13: neural tube Present Regionally restricted 5F Expression is detected on either side of the midline from head to tail.

Specimen 5. G: embryonic day 9.0 (more )
Structure Level Pattern Image Note
TS14: 1st branchial arch Present Regionally restricted 5G Expression is detected in neural-crest-derived cells of the first branchial arch and in somitomere-derived cells.
TS14: head somite Present Regionally restricted 5G Expression is detected in neural-crest-derived cells of the first branchial arch and in somitomere-derived cells.

Specimen 5. H: embryonic day 9.5 (more )
Structure Level Pattern Image Note
TS15: embryo Present Graded 5H Expression decreses from anterior to posterior.

Specimen E7.5: embryonic day 7.5 (more )
Note: Early head fold stage embryo.
Structure Level Pattern Image Note
TS11: node Strong
TS11: future spinal cord Strong Regionally restricted Expression is detected on either side of the midline.

Specimen 6. A: embryonic day 7.0 (more )
Note: Early head fold stage embryo.
Structure Level Pattern Image Note
TS11: embryo mesoderm Present Graded 6A Expression is restricted to non-notochordal mesoderm and is higher in paraxial mesoderm, lower in lateral mesoderm.
TS11: embryo ectoderm Absent 6A Expression is absent from the epiblast.
TS11: embryo endoderm Absent 6A
TS11: node Absent 6A
TS11: primitive streak Absent 6A
TS11: notochordal process Absent 6A Expression is absent from the notochord.

Specimen 6. B: embryonic day 8.5 (more )
Structure Level Pattern Image Note
TS13: head somite Present 6B
TS13: embryo mesenchyme Present Regionally restricted 6B Expression in the lateral mesoderm fades laterally. Expression is also detected in the medial mesoderm.
TS13: lateral plate mesoderm Present Regionally restricted 6B Expression in the lateral mesoderm fades laterally. Expression is also detected in the medial mesoderm.
TS13: paraxial mesenchyme Present 6B Expression is present in the somitic mesoderm.

Specimen 6. C: embryonic day 9.0 (more )
Structure Level Pattern Image Note
TS14: embryo mesenchyme Present Regionally restricted 6C Expression is uniform in all non-notochrdal mesoderm except the heart.
TS14: neural tube Absent 6C
TS14: notochord Absent 6C


Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
05/21/2024
MGI 6.23
The Jackson Laboratory