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Gene Expression Data
Assay Details
Assay
Reference: J:157241 Uhde CW, et al., Rmst is a novel marker for the mouse ventral mesencephalic floor plate and the anterior dorsal midline cells. PLoS One. 2010;5(1):e8641
Assay type: RNA in situ
MGI Accession ID: MGI:7778464
Gene symbol: Rmst
Gene name: rhabdomyosarcoma 2 associated transcript (non-coding RNA)
Probe: Rmst cDNA
Probe preparation: Antisense labelled with digoxigenin RNA
Results
Specimen 1A: embryonic day 9.5 (more )
Structure Level Pattern Image Note
TS15: future brain Present Regionally restricted 1A Expressed in the dorsal midline of the anterior neural axis. Expression in the dorsal midline extended to the anterior most tip of the telencephalon.
TS15: diencephalon Present Regionally restricted 1A At the level of rostral diencephalon the expression domain expanded laterally into the alar plate and further to the basal plate at the caudal diencephalon. Expressed also in the caudal ventral region.
TS15: midbrain-hindbrain junction Present 1A A prominent band of expression was observed in the isthmus.
TS15: future midbrain floor plate Present 1A
TS15: intermediate mesenchyme Present 1A
TS15: telencephalon Present Regionally restricted 1A Expressed dorsally.

Specimen 1B: embryonic day 9.5 (more )
Structure Level Pattern Image Note
TS15: future brain Present Regionally restricted 1B Expressed in the dorsal midline of the anterior neural axis.
TS15: diencephalon Present Regionally restricted 1B At the level of rostral diencephalon the expression domain expanded laterally into the alar plate and further to the basal plate at the caudal diencephalon.
TS15: midbrain-hindbrain junction Present 1B A prominent band of expression was observed in the isthmus.

Specimen 1C: embryonic day 10.5 (more )
Structure Level Pattern Image Note
TS17: midbrain-hindbrain junction Present 1C Similar as in the E9.5.
TS17: brain Present Regionally restricted 1C Expressed in the dorsal midline, similar as in E9.5. Expression in the dorsal midline extended to the anterior most tip of the telencephalon.
TS17: telencephalon Present Regionally restricted 1C Expressed dorsally.
TS17: diencephalon Present Regionally restricted 1C Expressed in the rostral region. Expressed also in the caudal ventral region.
TS17: vascular plexus Present Regionally restricted 1C Expressed in the ventral mesencephalic flexure where midbrain dopaminergic neurons are being generated.
TS17: midbrain floor plate Present 1C

Specimen 1D: embryonic day 10.5 (more )
Structure Level Pattern Image Note
TS17: diencephalon Present Regionally restricted 1D Expressed in the rostral region. Expressed also in the caudal ventral region.
TS17: midbrain-hindbrain junction Present 1D
TS17: telencephalon Present Regionally restricted 1D Expression in the dorsal midline extended to the anterior most tip of the telencephalon.

Specimen 2A: embryonic day 9.5 (more )
Structure Level Pattern Image Note
TS15: telencephalon Present Regionally restricted 2A Expressed in the dorsal midline.

Specimen 2B: embryonic day 9.5 (more )
Structure Level Pattern Image Note
TS15: diencephalon Present Regionally restricted 2B Expression extended to the alar plate. Expressed also in the caudal ventral region.

Specimen 2C: embryonic day 9.5 (more )
Structure Level Pattern Image Note
TS15: future midbrain Present Regionally restricted 2C Expressed in the dorsal midline.

Specimen 2D: embryonic day 9.5 (more )
Structure Level Pattern Image Note
TS15: future midbrain Present Regionally restricted 2D Expression was primarily restricted to the dorsal midline.

Specimen 2E: embryonic day 10.5 (more )
Structure Level Pattern Image Note
TS17: telencephalon Present Regionally restricted 2E Expressed in the dorsal midline.

Specimen 2F: embryonic day 10.5 (more )
Structure Level Pattern Image Note
TS17: diencephalon Present Regionally restricted 2F Expressed dorsally. Expression extended to the alar plate.

Specimen 2G: embryonic day 10.5 (more )
Structure Level Pattern Image Note
TS17: midbrain Present Regionally restricted 2G Expression was primarily restricted to the dorsal midline. Expression in the ventral midbrain largely mirrors that of Lmx1a in both the progenitors in the ventricular and intermediate zone and in the mantle zone postmitotic cells.
TS17: midbrain floor plate Present 2G
TS17: midbrain mantle layer Present 2G
TS17: midbrain ventricular layer Present 2G

Specimen 2H: embryonic day 10.5 (more )
Structure Level Pattern Image Note
TS17: midbrain Present Regionally restricted 2H Expression was primarily restricted to the dorsal midline.

Specimen 2I: embryonic day 10.5 (more )
Structure Level Pattern Image Note
TS17: hindbrain Present Regionally restricted 2I Expression was primarily restricted to the dorsal midline. Expression was observed in the dorsal rhombic lip.

Specimen 2J: embryonic day 10.5 (more )
Structure Level Pattern Image Note
TS17: future spinal cord Present Regionally restricted 2J Expressed in the rostral spinal cord. Expression was primarily restricted to the dorsal midline.

Specimen 3A: embryonic day 11.5 (more )
Structure Level Pattern Image Note
TS19: midbrain Strong Regionally restricted 3A Expressed in both the roof plate and the floor plate, as well as in the most outer layer of cells in the alar plate and intermediate zone of the basal plate.
TS19: midbrain floor plate Strong 3A Expression level was high in the Lmx1a expressing region.
TS19: midbrain roof plate Present 3A

Specimen 3B: embryonic day 12.5 (more )
Structure Level Pattern Image Note
TS20: midbrain Strong Regionally restricted 3B Expressed in both the roof plate and the floor plate, as well as in the most outer layer of cells in the alar plate and intermediate zone of the basal plate.
TS20: midbrain floor plate Strong 3B Expression level was high in the Lmx1a expressing region.
TS20: midbrain roof plate Present 3B

Specimen 3C: embryonic day 11.5 (more )
Structure Level Pattern Image Note
TS19: midbrain Present Regionally restricted 3C Expression in the ventral midbrain largely mirrors that of Lmx1a in both the progenitors in the ventricular and intermediate zone and in the mantle zone postmitotic cells.
TS19: midbrain mantle layer Present 3C
TS19: midbrain ventricular layer Present 3C
TS19: midbrain floor plate Strong Regionally restricted 3C Expression level was high in the Lmx1a expressing region.

Specimen 3D: embryonic day 12.5 (more )
Structure Level Pattern Image Note
TS20: midbrain Present Regionally restricted 3D Expression in the ventral midbrain largely mirrors that of Lmx1a in both the progenitors in the ventricular and intermediate zone and in the mantle zone postmitotic cells.
TS20: midbrain mantle layer Present 3D
TS20: midbrain ventricular layer Present 3D
TS20: midbrain floor plate Strong 3D Expression level was high in the Lmx1a expressing region.

Specimen 3E: embryonic day 13.5 (more )
Structure Level Pattern Image Note
TS21: midbrain Present Regionally restricted 3E Expression in the ventral midbrain largely mirrors that of Lmx1a in both the progenitors in the ventricular and intermediate zone and in the mantle zone postmitotic cells.
TS21: midbrain mantle layer Present 3E
TS21: midbrain ventricular layer Present 3E
TS21: midbrain floor plate Strong 3E Expression level was high in the Lmx1a expressing region.

Specimen 3F: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS22: midbrain Present Regionally restricted 3F Expression was primarily restricted to the forming ventral tegmental area that lies immediately adjacent to the ventral midline.
TS22: red nucleus Present 3F


Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/25/2025
MGI 6.24
The Jackson Laboratory