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Gene Expression Data
Assay Details
Assay
Reference: J:164341 Kersten FF, et al., Association of whirlin with Cav1.3 (alpha1D) channels in photoreceptors, defining a novel member of the usher protein network. Invest Ophthalmol Vis Sci. 2010 May;51(5):2338-46
Assay type: RNA in situ
MGI Accession ID: MGI:7734719
Gene symbol: Cacna1d
Gene name: calcium channel, voltage-dependent, L type, alpha 1D subunit
Probe: Cacna1d cDNA
Probe preparation: Antisense labelled with digoxigenin RNA
Results
Specimen 4A E12.5: embryonic day 12.5 (more )
Structure Level Pattern Image Note
TS20: lung Present 4A E12.5
TS20: midbrain Present 4A E12.5
TS20: neocortex Present 4A E12.5
TS20: endocrine gland Present Regionally restricted 4A E12.5 Expressed in the adrenal gland.

Specimen 4A E14.5: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS22: olfactory epithelium Present 4A E14.5
TS22: spinal cord Present 4A E14.5
TS22: tongue Present 4A E14.5
TS22: stomach Present Regionally restricted 4A E14.5 Expressed in the stomach wall.

Specimen 4B: embryonic day 12.5 (more )
Structure Level Pattern Image Note
TS20: neural retina Strong Widespread 4B Expressed in the whole neuroblastic layer.

Specimen 4C: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS22: neural retina Strong Regionally restricted 4C Expressed in the whole neuroblastic layer, but no staining was detected at the outermost cells.

Specimen 4D: embryonic day 16.5 (more )
Structure Level Pattern Image Note
TS24: retina layer Present Regionally restricted 4D Expressed in the inner neuroblastic layer, with the highest signal intensity in the area around the developing lens.

Specimen 4E: embryonic day 18.5 (more )
Structure Level Pattern Image Note
TS26: retina ganglion cell layer Present Regionally restricted 4E Expressed in a subset of the cells.
TS26: retina inner nuclear layer Strong 4E
TS26: retina layer Weak Regionally restricted 4E Low-intensity staining was present in the neuroepithelium surrounding the ganglion cells and the inner nuclear layer.

Specimen 4F: postnatal day 7 (more )
Structure Level Pattern Image Note
TS28: retina inner nuclear layer Strong 4F
TS28: retina ganglion cell layer Strong Regionally restricted 4F Expressed in a subset of the cells.
TS28: photoreceptor layer inner segment Present 4F
TS28: retina outer nuclear layer Present 4F

Specimen 4G: postnatal day 90 (more )
Structure Level Pattern Image Note
TS28: retina inner nuclear layer Strong 4G
TS28: retina ganglion cell layer Strong Regionally restricted 4G Expressed in a subset of the cells.
TS28: photoreceptor layer inner segment Present 4G
TS28: retina outer nuclear layer Present 4G

Specimen 4H: postnatal day 90 (more )
Structure Level Pattern Image Note
TS28: retina inner nuclear layer Strong 4H
TS28: retina ganglion cell layer Strong Regionally restricted 4H Expressed in a subset of the cells.
TS28: photoreceptor layer inner segment Present 4H
TS28: retina outer nuclear layer Present 4H

Specimen 4I/J: embryonic day 16.5 (more )
Structure Level Pattern Image Note
TS24: inner ear Present 4I
TS24: cochlea Present 4J , 4I
TS24: inner ear vestibular component Present 4J , 4I

Specimen 4L: embryonic day 16.5 (more )
Structure Cell Type Level Pattern Image Note
TS24: organ of Corti cochlear inner hair cell Present 4L

Specimen 4M: embryonic day 16.5 (more )
Structure Cell Type Level Pattern Image Note
TS24: organ of Corti cochlear inner hair cell Present 4M
TS24: cochlear ganglion spiral ganglion neuron Present 4M

Specimen 4N: embryonic day 16.5 (more )
Structure Cell Type Level Pattern Image Note
TS24: macula of utricle macular hair cell Present 4N

Specimen 4O: embryonic day 16.5 (more )
Structure Level Pattern Image Note
TS24: semicircular canal Present Regionally restricted 4O Expressed in the crista ampullaris of the semicircular canals.

Specimen not shown: embryonic day 12.5 (more )
Structure Level Pattern Image Note
TS20: 4th ventricle choroid plexus Present
TS20: duodenum Present
TS20: heart Present
TS20: inner ear Present
TS20: jaw Present
TS20: metanephros Present
TS20: olfactory epithelium Present
TS20: spinal cord Present
TS20: thalamus Present
TS20: tongue Present
TS20: trigeminal ganglion Present
TS20: umbilical cord Present

Specimen not shown: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS22: 4th ventricle choroid plexus Present
TS22: adrenal gland Present
TS22: duodenum Present
TS22: heart Present
TS22: inner ear Present
TS22: jaw Present
TS22: lung Present
TS22: main olfactory bulb Present
TS22: metanephros Present
TS22: midbrain Present
TS22: neocortex Present
TS22: thalamus Present
TS22: trigeminal ganglion Present
TS22: umbilical cord Present

Specimen not shown: embryonic day 16.5 (more )
Structure Level Pattern Image Note
TS24: 4th ventricle choroid plexus Present
TS24: adrenal gland Present
TS24: duodenum Present
TS24: heart Present
TS24: jaw Present
TS24: lung Present
TS24: main olfactory bulb Present
TS24: metanephros Present
TS24: midbrain Present
TS24: neocortex Present
TS24: olfactory epithelium Present
TS24: spinal cord Present
TS24: stomach wall Present
TS24: thalamus Present
TS24: tongue Present
TS24: trigeminal ganglion Present
TS24: umbilical cord Present

Specimen not shown: embryonic day 18.5 (more )
Structure Level Pattern Image Note
TS26: lung Present
TS26: metanephros Present
TS26: olfactory epithelium Present
TS26: spinal cord Present
TS26: brain Strong
TS26: inner ear Strong


Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/18/2025
MGI 6.24
The Jackson Laboratory