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Gene Expression Data
Assay Details
Assay
Reference: J:131378 Liu H, et al., NeuroD1 regulates expression of thyroid hormone receptor 2 and cone opsins in the developing mouse retina. J Neurosci. 2008 Jan 16;28(3):749-56
Assay type: Immunohistochemistry
MGI Accession ID: MGI:7713097
Gene symbol: Opn1sw
Gene name: opsin 1 (cone pigments), short-wave-sensitive (color blindness, tritan)
Antibody: Anti-Blue opsin (AB5407)
Detection system: Secondary antibody coupled to Alexa Fluor 488
Assay notes: The authors did not specify which antibody was used, MGI:7712878 may have been used instead.
Results
Specimen 2A: postnatal day 14 (more )
Note: Flat mount. Dorsal retina. Double labeled: red - Opn1sw; green - peanut lectin agglutinin.
Structure Cell Type Level Pattern Image Note
TS28: photoreceptor layer retinal cone cell Present Non-Uniform 2A Expression is predominantly in cones in the dorsal retina.
Specimen 2B: postnatal day 14 (more )
Note: Flat mount. Ventral retina. Double labeled: red - Opn1sw; green - peanut lectin agglutinin.
Structure Cell Type Level Pattern Image Note
TS28: photoreceptor layer retinal cone cell Present Non-Uniform 2B Expression is predominantly in cones in the dorsal retina.
Specimen 2E: postnatal day 14; Neurod1tm1Mjts/Neurod1tm1Mjts (more )
Note: Flat mount. Dorsal retina. Double labeled: red - Opn1sw; green - peanut lectin agglutinin.
Structure Cell Type Level Pattern Image Note
TS28: photoreceptor layer retinal cone cell Present 2E
Specimen 2G: postnatal day 14; Neurod1tm1Mjts/Neurod1tm1Mjts (more )
Note: Flat mount. Ventral retina. Double labeled: red - Opn1sw; green - peanut lectin agglutinin.
Structure Cell Type Level Pattern Image Note
TS28: photoreceptor layer retinal cone cell Present 2G
Specimen 3D: embryonic day 18.0 (more )
Structure Cell Type Level Pattern Image Note
TS26: retina layer retinal cone cell Present Single cells 3D Expression is in a few scattered expressing cones.
Specimen 3E: embryonic day 18.0; Neurod1tm1Mjts/Neurod1tm1Mjts (more )
Structure Cell Type Level Pattern Image Note
TS26: retina layer retinal cone cell Strong 3E Expression is in cone cells.
Specimen S1A: postnatal day 12-16 (more )
Note: Dorsal retina. Double labeled: red - Opn1sw; green - peanut lectin agglutinin.
Structure Cell Type Level Pattern Image Note
TS28: photoreceptor layer retinal cone cell Present Non-Uniform S1A Expression is predominantly in cones in the dorsal retina.
Specimen S1B: postnatal day 12-16 (more )
Note: Ventral retina. Double labeled: red - Opn1sw; green - peanut lectin agglutinin.
Structure Cell Type Level Pattern Image Note
TS28: photoreceptor layer retinal cone cell Present Non-Uniform S1B Expression is predominantly in cones in the dorsal retina.
Specimen S1E: postnatal day 12-16; Neurod1tm1Mjts/Neurod1tm1Mjts (more )
Note: Dorsal retina. Double labeled: red - Opn1sw; green - peanut lectin agglutinin.
Structure Level Pattern Image Note
TS28: photoreceptor layer Present S1E
Specimen S1F: postnatal day 12-16; Neurod1tm1Mjts/Neurod1tm1Mjts (more )
Note: Ventral retina. Double labeled: red - Opn1sw; green - peanut lectin agglutinin.
Structure Level Pattern Image Note
TS28: photoreceptor layer Present S1F
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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03/25/2025
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