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Gene Expression Data
Assay Details
Assay
Reference: J:327901 Ye Q, et al., Understanding the development of oral epithelial organs through single cell transcriptomic analysis. Development. 2022 Aug 15;149(16):dev200539
Assay type: RNA in situ
MGI Accession ID: MGI:7615072
Gene symbol: Irx1
Gene name: Iroquois homeobox 1
Probe: Mm-Irx1 (513861)
Probe preparation: Antisense DNA
Visualized with: Fluorescence
Results
Specimen 4B right In: embryonic day 12.0 (more )
Structure Level Pattern Image Note
TS20: tooth bud Present Regionally restricted 4B In Expression was detected in the non-initiation knot basal layer of the incisor.

Specimen 4B right Mo: embryonic day 12.0 (more )
Structure Level Pattern Image Note
TS20: tooth bud Present Regionally restricted 4B Mo Expression was detected in the non-initiation knot basal layer of the molar.

Specimen 7A: embryonic day 9.5 (more )
Note: Triple labeled: red - Irx1; green - Cxcl14 (assay MGI:7615293); cyan - Dmrt2 (assay MGI:7615292).
Structure Level Pattern Image Note
TS15: 1st branchial arch mandibular component ectoderm Present Regionally restricted 7A' , 7A Expression was detected in the majority of ectodermal cells and border the Shh-positive endoderm.

Specimen 7B: embryonic day 10.0 (more )
Note: Triple labeled: red - Irx1; green - Cxcl14 (assay MGI:7615293); cyan - Dmrt2 (assay MGI:7615292).
Structure Level Pattern Image Note
TS16: 1st branchial arch mandibular component ectoderm Present Regionally restricted 7B , 7B' Irx1+ cells next to the developing heart now also express Cxcl14.

Specimen 7C: embryonic day 10.5 (more )
Note: Triple labeled: red - Irx1; green - Cxcl14 (assay MGI:7615293); cyan - Dmrt2 (assay MGI:7615292).
Structure Level Pattern Image Note
TS17: 1st branchial arch mandibular component ectoderm Present Regionally restricted 7C , 7C' Expression expanded noticeably between E10.0 and E10.5. Posteriorly, expression continued to adjoin the Shh+ endoderm.
TS17: oral region epithelium Present Regionally restricted 7C Expression was located at the oral surface, but boundary cells co-expressing Cxcl14 remain broadly distributed.

Specimen 7D: embryonic day 11.0 (more )
Note: Triple labeled: red - Irx1; green - Cxcl14 (assay MGI:7615293); cyan - Dmrt2 (assay MGI:7615292).
Structure Level Pattern Image Note
TS18: oral region epithelium Present Regionally restricted 7D' lower left , 7D , 7D' , 7D' lower right Expression was detected in the dental epithelium. Dmrt2-expressing cells in the posterior region delineate Irx1 staining in the dental lamina posteriorly. The anterior boundary was delineated with Cxcl14 expression.

Specimen 7E: embryonic day 12.0 (more )
Note: Triple labeled: red - Irx1; green - Cxcl14 (assay MGI:7615293); cyan - Dmrt2 (assay MGI:7615292).
Structure Level Pattern Image Note
TS20: mandibular process epithelium Present Regionally restricted 7E , 7E' , 7E'' Expression was detected in the dental epithelium. Some overlap with Cxcl14 expression was observed at the anterior boundary (2-4 cells) and with Dmrt2 expression at the posterior boundary.

Specimen S9C E11.0: embryonic day 11.0 (more )
Note: Triple labeled: red - Irx1; cyan - Dmrt2 (assay MGI:7615292); green - Rxfp1 (assay MGI:7623179).
Structure Level Pattern Image Note
TS18: oral region epithelium Present Regionally restricted S9C E11.0 upper Expression was detected in dental epithelium.

Specimen S9C E11.5: embryonic day 11.5 (more )
Note: Triple labeled: red - Irx1; cyan - Dmrt2 (assay MGI:7615292); green - Rxfp1 (assay MGI:7623179).
Structure Level Pattern Image Note
TS19: mandibular process Present Regionally restricted S9C E11.5 upper Expression was detected in dental epithelium.

Specimen S9C E12.0: embryonic day 12.0 (more )
Note: Triple labeled: red - Irx1; cyan - Dmrt2 (assay MGI:7615292); green - Rxfp1 (assay MGI:7623179).
Structure Level Pattern Image Note
TS20: mandibular process epithelium Present Regionally restricted S9C E12.0 upper Expression was detected in dental epithelium.

Specimen S9C E12.5: embryonic day 12.5 (more )
Note: Triple labeled: red - Irx1; cyan - Dmrt2 (assay MGI:7615292); green - Rxfp1 (assay MGI:7623179).
Structure Level Pattern Image Note
TS20: mandibular process epithelium Present Regionally restricted S9C E12.5 upper Expression was detected in dental epithelium.

Specimen S10B: embryonic day 9.5 (more )
Note: Double labeled: red - Irx1; white - laminin.
Structure Level Pattern Image Note
TS15: 1st branchial arch mandibular component ectoderm Present Regionally restricted S10B left Expression was detected in the majority of ectodermal cells in medial mandible region.

Specimen S10C: embryonic day 9.5 (more )
Note: Double labeled: red - Irx1; green - Tfap2b (assay MGI:7615296).
Structure Level Pattern Image Note
TS15: 1st branchial arch mandibular component ectoderm Present Regionally restricted S10C left Expression was detected in the majority of ectodermal cells in lateral mandible region.

Specimen S10D: embryonic day 10.5 (more )
Note: Double labeled: red - Irx1; white - laminin.
Structure Level Pattern Image Note
TS17: 1st branchial arch mandibular component Present Regionally restricted S10D left Expression was located at the oral surface.

Specimen S10H: embryonic day 8.5 (more )
Structure Level Pattern Image Note
TS14: 1st branchial arch mandibular component ectoderm Present Regionally restricted S10H right Expression was detected ventrally in the newly formed mandibular arch epithelium at E8.5.


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Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
05/14/2024
MGI 6.23
The Jackson Laboratory