Gene Expression Data
Assay Details
Assay
|
Reference:
|
J:340938
Washausen S, et al., Patterns of senescence and apoptosis during development of branchial arches, epibranchial placodes, and pharyngeal pouches. Dev Dyn. 2023 Sep;252(9):1189-1223
|
Assay type:
|
Immunohistochemistry
|
MGI Accession ID:
|
MGI:7571558
|
Gene symbol:
|
Cdkn1a
|
Gene name:
|
cyclin dependent kinase inhibitor 1A
|
Antibody:
|
anti-p21 (sc-6246)
|
Detection system:
|
Biotinylated secondary antibody/[Strept]avidin coupled to horseradish peroxidase
|
|
Results
|
Specimen
2A:
embryonic day 10.5
(more )
Specimen
2A:
(close )
Genetic Background:
|
C57BL/6N
|
Age:
|
embryonic day 10.5
|
Sex:
|
Not Specified
|
Type:
|
section
|
Fixation:
|
4% Paraformaldehyde
|
Embedding:
|
Paraffin
|
Structure |
Level |
Pattern |
Image |
Note |
TS17: 2nd branchial groove ectoderm |
Present |
Regionally restricted |
2A
|
Along branchial clefts, groups of expressing cells are arranged in a roughly alternating pattern with Mki67-expressing proliferating cells
|
Specimen
2C:
embryonic day 10.5
(more )
Specimen
2C:
(close )
Genetic Background:
|
C57BL/6N
|
Age:
|
embryonic day 10.5
|
Sex:
|
Not Specified
|
Type:
|
section
|
Fixation:
|
4% Paraformaldehyde
|
Embedding:
|
Paraffin
|
Structure |
Level |
Pattern |
Image |
Note |
TS17: 2nd branchial groove ectoderm |
Present |
Regionally restricted |
2C
|
Along branchial clefts, groups of expressing cells are arranged in a roughly alternating pattern with Mki67-expressing proliferating cells
|
Specimen
2E:
embryonic day 10.5
(more )
Specimen
2E:
(close )
Genetic Background:
|
C57BL/6N
|
Age:
|
embryonic day 10.5
|
Sex:
|
Not Specified
|
Type:
|
section
|
Fixation:
|
4% Paraformaldehyde
|
Embedding:
|
Paraffin
|
Structure |
Level |
Pattern |
Image |
Note |
TS17: 2nd branchial arch mesenchyme |
Present |
Single cells |
2E
|
In the mesenchymal core of branchial arches, single expressing cells of unknown identity are seen.
|
Specimen
3C:
embryonic day 10.5
(more )
Specimen
3C:
(close )
Genetic Background:
|
C57BL/6N
|
Age:
|
embryonic day 10.5
|
Sex:
|
Not Specified
|
Type:
|
section
|
Fixation:
|
4% Paraformaldehyde
|
Embedding:
|
Paraffin
|
Structure |
Level |
Pattern |
Image |
Note |
TS17: geniculate placode |
Present |
Regionally restricted |
3C
|
Expression in senescent cells in in dorsal and ventral parts of epibranchial placode 1.
|
TS17: 1st branchial pouch endoderm |
Present |
Regionally restricted |
3C
|
Senescent cells located predominantly in rostral walls of pharyngeal pouches.
|
Specimen
3D:
embryonic day 9.5
(more )
Specimen
3D:
(close )
Genetic Background:
|
C57BL/6N
|
Age:
|
embryonic day 9.5
|
Sex:
|
Not Specified
|
Type:
|
section
|
Fixation:
|
4% Paraformaldehyde
|
Embedding:
|
Paraffin
|
Structure |
Level |
Pattern |
Image |
Note |
TS15: geniculate placode |
Present |
Regionally restricted |
3D
|
Expression in senescent cells in in dorsal and ventral parts of epibranchial placode 1. Authors report almost simultaneous onset of senescence and apoptosis around E9.5.
|
Specimen
3E:
embryonic day 10.5
(more )
Specimen
3E:
(close )
Genetic Background:
|
C57BL/6N
|
Age:
|
embryonic day 10.5
|
Sex:
|
Not Specified
|
Type:
|
section
|
Fixation:
|
4% Paraformaldehyde
|
Embedding:
|
Paraffin
|
Structure |
Level |
Pattern |
Image |
Note |
TS17: petrosal placode |
Present |
Regionally restricted |
3E
|
Expression in senescent cells in in dorsal and ventral parts of epibranchial placode 2.
|
TS17: 2nd branchial pouch endoderm |
Present |
Regionally restricted |
3E
|
Senescent cells located predominantly in rostral walls of pharyngeal pouches.
|
Specimen
3F:
embryonic day 9.5
(more )
Specimen
3F:
(close )
Genetic Background:
|
C57BL/6N
|
Age:
|
embryonic day 9.5
|
Sex:
|
Not Specified
|
Type:
|
section
|
Fixation:
|
4% Paraformaldehyde
|
Embedding:
|
Paraffin
|
Structure |
Level |
Pattern |
Image |
Note |
TS15: petrosal placode |
Present |
Regionally restricted |
3F
|
Expression in senescent cells in in dorsal and ventral parts of epibranchial placode 2. Authors report clear lead in senescence only in epibranchial placode 1.
|
Specimen
3G:
embryonic day 10.5
(more )
Specimen
3G:
(close )
Genetic Background:
|
C57BL/6N
|
Age:
|
embryonic day 10.5
|
Sex:
|
Not Specified
|
Type:
|
section
|
Fixation:
|
4% Paraformaldehyde
|
Embedding:
|
Paraffin
|
Structure |
Level |
Pattern |
Image |
Note |
TS17: petrosal placode |
Present |
Regionally restricted |
3G
|
Expression in senescent cells in in dorsal and ventral parts of epibranchial placode 2. Authors report clear lead in senescence only in epibranchial placode 1.
|
Specimen
3H:
embryonic day 9.5
(more )
Specimen
3H:
(close )
Genetic Background:
|
C57BL/6N
|
Age:
|
embryonic day 9.5
|
Sex:
|
Not Specified
|
Type:
|
section
|
Fixation:
|
4% Paraformaldehyde
|
Embedding:
|
Paraffin
|
Structure |
Level |
Pattern |
Image |
Note |
TS15: nodose placode |
Present |
Regionally restricted |
3H
|
Expression in senescent cells in in dorsal and ventral parts of epibranchial placode 3. Authors report almost simultaneous onset of senescence and apoptosis around E9.5.
|
Specimen
3I:
embryonic day 10.5
(more )
Specimen
3I:
(close )
Genetic Background:
|
C57BL/6N
|
Age:
|
embryonic day 10.5
|
Sex:
|
Not Specified
|
Type:
|
section
|
Fixation:
|
4% Paraformaldehyde
|
Embedding:
|
Paraffin
|
Structure |
Level |
Pattern |
Image |
Note |
TS17: nodose placode |
Present |
Regionally restricted |
3I
|
Expression in senescent cells in in dorsal and ventral parts of epibranchial placode 3. Authors report almost simultaneous onset of senescence and apoptosis around E9.5.
|
Specimen
6E p21:
embryonic day 10.5
(more )
Specimen
6E p21:
(close )
Genetic Background:
|
C57BL/6N
|
Age:
|
embryonic day 10.5
|
Sex:
|
Not Specified
|
Type:
|
section
|
Fixation:
|
4% Paraformaldehyde
|
Embedding:
|
Paraffin
|
Structure |
Level |
Pattern |
Image |
Note |
TS17: petrosal placode |
Present |
Regionally restricted |
6E p21
|
Senescent cells mainly concentrated at periphery. Groups of senescent cells in weakly invaginating epibranchial placode 2 predominantly where density of proliferating cells is particularly low.
|
Specimen
6F p21:
embryonic day 10.5
(more )
Specimen
6F p21:
(close )
Genetic Background:
|
C57BL/6N
|
Age:
|
embryonic day 10.5
|
Sex:
|
Not Specified
|
Type:
|
section
|
Fixation:
|
4% Paraformaldehyde
|
Embedding:
|
Paraffin
|
Structure |
Level |
Pattern |
Image |
Note |
TS17: petrosal placode |
Present |
Regionally restricted |
6F p21
|
Senescent cells mainly concentrated at periphery. Groups of senescent cells in weakly invaginating epibranchial placode 2 predominantly where density of proliferating cells is particularly low.
|
Specimen
6G p21:
embryonic day 10.5
(more )
Specimen
6G p21:
(close )
Genetic Background:
|
C57BL/6N
|
Age:
|
embryonic day 10.5
|
Sex:
|
Not Specified
|
Type:
|
section
|
Fixation:
|
4% Paraformaldehyde
|
Embedding:
|
Paraffin
|
Structure |
Level |
Pattern |
Image |
Note |
TS17: petrosal placode |
Present |
Regionally restricted |
6G p21
|
Senescent cells mainly concentrated at periphery. Groups of senescent cells in weakly invaginating epibranchial placode 2 predominantly where density of proliferating cells is particularly low.
|
Specimen
6H p21:
embryonic day 10.5
(more )
Specimen
6H p21:
(close )
Genetic Background:
|
C57BL/6N
|
Age:
|
embryonic day 10.5
|
Sex:
|
Not Specified
|
Type:
|
section
|
Fixation:
|
4% Paraformaldehyde
|
Embedding:
|
Paraffin
|
Structure |
Level |
Pattern |
Image |
Note |
TS17: petrosal placode |
Present |
Regionally restricted |
6H p21
|
Senescent cells mainly concentrated at periphery. Groups of senescent cells in weakly invaginating epibranchial placode 2 predominantly where density of proliferating cells is particularly low.
|
Specimen
10G:
embryonic day 10.5
(more )
Specimen
10G:
(close )
Genetic Background:
|
C57BL/6N
|
Age:
|
embryonic day 10.5
|
Sex:
|
Not Specified
|
Type:
|
section
|
Fixation:
|
4% Paraformaldehyde
|
Embedding:
|
Paraffin
|
Structure |
Level |
Pattern |
Image |
Note |
TS17: petrosal placode |
Present |
Regionally restricted |
10G
|
Expression at transition from placode tissue to surface ectoderm. Expression virtually absent among densely clustered Neurog2-expressing premigratory neuroblasts.
|
Specimen
12A,A':
embryonic day 9.5
(more )
Specimen
12A,A':
(close )
Genetic Background:
|
C57BL/6N
|
Age:
|
embryonic day 9.5
|
Sex:
|
Not Specified
|
Type:
|
section
|
Fixation:
|
4% Paraformaldehyde
|
Embedding:
|
Paraffin
|
Structure |
Level |
Pattern |
Image |
Note |
TS15: 2nd branchial pouch endoderm |
Present |
Regionally restricted |
12A
,
12A'
|
Between E9.5 and E10.5, stark contrast between steadily increasing number of expressing endodermal cells in rostral walls, and virtually complete absence of expression in caudal walls of pharyngeal pouch 2.
|
Specimen
12B:
embryonic day 10.0
(more )
Specimen
12B:
(close )
Genetic Background:
|
C57BL/6N
|
Age:
|
embryonic day 10.0
|
Sex:
|
Not Specified
|
Type:
|
section
|
Fixation:
|
4% Paraformaldehyde
|
Embedding:
|
Paraffin
|
Structure |
Level |
Pattern |
Image |
Note |
TS16: 2nd branchial pouch endoderm |
Present |
Regionally restricted |
12B
|
Between E9.5 and E10.5, stark contrast between steadily increasing number of expressing endodermal cells in rostral walls, and virtually complete absence of expression in caudal walls of pharyngeal pouch 2.
|
Specimen
12C,C':
embryonic day 10.5
(more )
Specimen
12C,C':
(close )
Genetic Background:
|
C57BL/6N
|
Age:
|
embryonic day 10.5
|
Sex:
|
Not Specified
|
Type:
|
section
|
Fixation:
|
4% Paraformaldehyde
|
Embedding:
|
Paraffin
|
Structure |
Level |
Pattern |
Image |
Note |
TS17: 2nd branchial pouch endoderm |
Present |
Regionally restricted |
12C'
,
12C
|
Between E9.5 and E10.5, stark contrast between steadily increasing number of expressing endodermal cells in rostral walls, and virtually complete absence of expression in caudal walls of pharyngeal pouch 2.
|
Specimen
12D:
embryonic day 9.5
(more )
Specimen
12D:
(close )
Genetic Background:
|
C57BL/6N
|
Age:
|
embryonic day 9.5
|
Sex:
|
Not Specified
|
Type:
|
section
|
Fixation:
|
4% Paraformaldehyde
|
Embedding:
|
Paraffin
|
Structure |
Level |
Pattern |
Image |
Note |
TS15: 3rd branchial pouch endoderm |
Present |
Regionally restricted |
12D
|
Expressing cells in pharyngeal pouch 3 initially appear dorsally and lateral also ventrally.
|
Specimen
12E:
embryonic day 10.5
(more )
Specimen
12E:
(close )
Genetic Background:
|
C57BL/6N
|
Age:
|
embryonic day 10.5
|
Sex:
|
Not Specified
|
Type:
|
section
|
Fixation:
|
4% Paraformaldehyde
|
Embedding:
|
Paraffin
|
Structure |
Level |
Pattern |
Image |
Note |
TS17: 3rd branchial pouch endoderm |
Present |
Regionally restricted |
12E
|
pExpressing cells in pharyngeal pouch 3 initially appear dorsally and lateral also ventrally.
|
Specimen
12F:
embryonic day 10.5
(more )
Specimen
12F:
(close )
Genetic Background:
|
C57BL/6N
|
Age:
|
embryonic day 10.5
|
Sex:
|
Not Specified
|
Type:
|
section
|
Fixation:
|
4% Paraformaldehyde
|
Embedding:
|
Paraffin
|
Structure |
Level |
Pattern |
Image |
Note |
TS17: 3rd branchial pouch endoderm |
Present |
Regionally restricted |
12F
|
From E10.5 onwards, expression in senescent cells in rostral, caudal, dorsal and ventral walls of pharyngeal pouch 3.
|
Specimen
12G:
embryonic day 11.0
(more )
Specimen
12G:
(close )
Genetic Background:
|
C57BL/6N
|
Age:
|
embryonic day 11.0
|
Sex:
|
Not Specified
|
Type:
|
section
|
Fixation:
|
4% Paraformaldehyde
|
Embedding:
|
Paraffin
|
Structure |
Level |
Pattern |
Image |
Note |
TS18: 3rd branchial pouch endoderm |
Present |
Regionally restricted |
12G
|
From E10.5 onwards, expression in senescent cells in rostral, caudal, dorsal and ventral walls of pharyngeal pouch 3.
|
Specimen
15A:
embryonic day 10.5
(more )
Specimen
15A:
(close )
Genetic Background:
|
C57BL/6N
|
Age:
|
embryonic day 10.5
|
Sex:
|
Not Specified
|
Type:
|
section
|
Fixation:
|
4% Paraformaldehyde
|
Embedding:
|
Paraffin
|
Specimen
15C:
embryonic day 10.5
(more )
Specimen
15C:
(close )
Genetic Background:
|
C57BL/6N
|
Age:
|
embryonic day 10.5
|
Sex:
|
Not Specified
|
Type:
|
section
|
Fixation:
|
4% Paraformaldehyde
|
Embedding:
|
Paraffin
|
Specimen
15E:
embryonic day 11.0
(more )
Specimen
15E:
(close )
Genetic Background:
|
C57BL/6N
|
Age:
|
embryonic day 11.0
|
Sex:
|
Not Specified
|
Type:
|
section
|
Fixation:
|
4% Paraformaldehyde
|
Embedding:
|
Paraffin
|
Specimen
15G:
embryonic day 11.0
(more )
Specimen
15G:
(close )
Genetic Background:
|
C57BL/6N
|
Age:
|
embryonic day 11.0
|
Sex:
|
Not Specified
|
Type:
|
section
|
Fixation:
|
4% Paraformaldehyde
|
Embedding:
|
Paraffin
|
Specimen
16A p21:
embryonic day 9.0
(more )
Specimen
16A p21:
(close )
Genetic Background:
|
C57BL/6N
|
Age:
|
embryonic day 9.0
|
Sex:
|
Not Specified
|
Type:
|
section
|
Fixation:
|
4% Paraformaldehyde
|
Embedding:
|
Paraffin
|
Specimen
16B p21:
embryonic day 9.5
(more )
Specimen
16B p21:
(close )
Genetic Background:
|
C57BL/6N
|
Age:
|
embryonic day 9.5
|
Sex:
|
Not Specified
|
Type:
|
section
|
Fixation:
|
4% Paraformaldehyde
|
Embedding:
|
Paraffin
|
Structure |
Level |
Pattern |
Image |
Note |
TS15: 2nd branchial pouch endoderm |
Present |
Regionally restricted |
16B p21
|
Rostral focus of expressing endodermal cells is established on E9.5. Salt-and-pepper pattern with first rostral expression within Mki67-expressing clusters.
|
Specimen
16C p21:
embryonic day 10.5
(more )
Specimen
16C p21:
(close )
Genetic Background:
|
C57BL/6N
|
Age:
|
embryonic day 10.5
|
Sex:
|
Not Specified
|
Type:
|
section
|
Fixation:
|
4% Paraformaldehyde
|
Embedding:
|
Paraffin
|
Structure |
Level |
Pattern |
Image |
Note |
TS17: 2nd branchial pouch endoderm |
Strong |
Clusters |
16C p21
|
Rostral focus of expressing endodermal cells increases in size and intensity over time. Clusters of strongly expressing endoderm cells, clearly distinguised from clusters of Mki67-expressing cells.
|
Specimen
16D p21:
embryonic day 10.5
(more )
Specimen
16D p21:
(close )
Genetic Background:
|
C57BL/6N
|
Age:
|
embryonic day 10.5
|
Sex:
|
Not Specified
|
Type:
|
section
|
Fixation:
|
4% Paraformaldehyde
|
Embedding:
|
Paraffin
|
Structure |
Level |
Pattern |
Image |
Note |
TS17: 2nd branchial pouch endoderm |
Strong |
Clusters |
16D p21
|
Rostral focus of expressing endodermal cells increases in size and intensity over time. Clusters of strongly expressing endoderm cells, clearly distinguised from clusters of Mki67-expressing cells.
|
Specimen
16E p21:
embryonic day 10.5
(more )
Specimen
16E p21:
(close )
Genetic Background:
|
C57BL/6N
|
Age:
|
embryonic day 10.5
|
Sex:
|
Not Specified
|
Type:
|
section
|
Fixation:
|
4% Paraformaldehyde
|
Embedding:
|
Paraffin
|
Structure |
Level |
Pattern |
Image |
Note |
TS17: 2nd branchial pouch endoderm |
Strong |
Clusters |
16E p21
|
Rostral focus of expressing endodermal cells increases in size and intensity over time. Clusters of strongly expressing endoderm cells, clearly distinguised from clusters of Mki67-expressing cells.
|
Specimen
16F p21:
embryonic day 10.5
(more )
Specimen
16F p21:
(close )
Genetic Background:
|
C57BL/6N
|
Age:
|
embryonic day 10.5
|
Sex:
|
Not Specified
|
Type:
|
section
|
Fixation:
|
4% Paraformaldehyde
|
Embedding:
|
Paraffin
|
Structure |
Level |
Pattern |
Image |
Note |
TS17: 2nd branchial pouch endoderm |
Strong |
Clusters |
16F p21
|
Rostral focus of expressing endodermal cells increases in size and intensity over time. Clusters of strongly expressing endoderm cells, clearly distinguised from clusters of Mki67-expressing cells.
|
|