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Gene Expression Data
Assay Details
Assay
Reference: J:340938 Washausen S, et al., Patterns of senescence and apoptosis during development of branchial arches, epibranchial placodes, and pharyngeal pouches. Dev Dyn. 2023 Sep;252(9):1189-1223
Assay type: Immunohistochemistry
MGI Accession ID: MGI:7571558
Gene symbol: Cdkn1a
Gene name: cyclin dependent kinase inhibitor 1A
Antibody: anti-p21 (sc-6246)
Detection system: Biotinylated secondary antibody/[Strept]avidin coupled to horseradish peroxidase
Results
Specimen 2A: embryonic day 10.5 (more )
Structure Level Pattern Image Note
TS17: 2nd branchial groove ectoderm Present Regionally restricted 2A Along branchial clefts, groups of expressing cells are arranged in a roughly alternating pattern with Mki67-expressing proliferating cells

Specimen 2C: embryonic day 10.5 (more )
Structure Level Pattern Image Note
TS17: 2nd branchial groove ectoderm Present Regionally restricted 2C Along branchial clefts, groups of expressing cells are arranged in a roughly alternating pattern with Mki67-expressing proliferating cells

Specimen 2E: embryonic day 10.5 (more )
Structure Level Pattern Image Note
TS17: 2nd branchial arch mesenchyme Present Single cells 2E In the mesenchymal core of branchial arches, single expressing cells of unknown identity are seen.

Specimen 3C: embryonic day 10.5 (more )
Structure Level Pattern Image Note
TS17: geniculate placode Present Regionally restricted 3C Expression in senescent cells in in dorsal and ventral parts of epibranchial placode 1.
TS17: 1st branchial pouch endoderm Present Regionally restricted 3C Senescent cells located predominantly in rostral walls of pharyngeal pouches.

Specimen 3D: embryonic day 9.5 (more )
Structure Level Pattern Image Note
TS15: geniculate placode Present Regionally restricted 3D Expression in senescent cells in in dorsal and ventral parts of epibranchial placode 1. Authors report almost simultaneous onset of senescence and apoptosis around E9.5.

Specimen 3E: embryonic day 10.5 (more )
Structure Level Pattern Image Note
TS17: petrosal placode Present Regionally restricted 3E Expression in senescent cells in in dorsal and ventral parts of epibranchial placode 2.
TS17: 2nd branchial pouch endoderm Present Regionally restricted 3E Senescent cells located predominantly in rostral walls of pharyngeal pouches.

Specimen 3F: embryonic day 9.5 (more )
Structure Level Pattern Image Note
TS15: petrosal placode Present Regionally restricted 3F Expression in senescent cells in in dorsal and ventral parts of epibranchial placode 2. Authors report clear lead in senescence only in epibranchial placode 1.

Specimen 3G: embryonic day 10.5 (more )
Structure Level Pattern Image Note
TS17: petrosal placode Present Regionally restricted 3G Expression in senescent cells in in dorsal and ventral parts of epibranchial placode 2. Authors report clear lead in senescence only in epibranchial placode 1.

Specimen 3H: embryonic day 9.5 (more )
Structure Level Pattern Image Note
TS15: nodose placode Present Regionally restricted 3H Expression in senescent cells in in dorsal and ventral parts of epibranchial placode 3. Authors report almost simultaneous onset of senescence and apoptosis around E9.5.

Specimen 3I: embryonic day 10.5 (more )
Structure Level Pattern Image Note
TS17: nodose placode Present Regionally restricted 3I Expression in senescent cells in in dorsal and ventral parts of epibranchial placode 3. Authors report almost simultaneous onset of senescence and apoptosis around E9.5.

Specimen 6E p21: embryonic day 10.5 (more )
Structure Level Pattern Image Note
TS17: petrosal placode Present Regionally restricted 6E p21 Senescent cells mainly concentrated at periphery. Groups of senescent cells in weakly invaginating epibranchial placode 2 predominantly where density of proliferating cells is particularly low.

Specimen 6F p21: embryonic day 10.5 (more )
Structure Level Pattern Image Note
TS17: petrosal placode Present Regionally restricted 6F p21 Senescent cells mainly concentrated at periphery. Groups of senescent cells in weakly invaginating epibranchial placode 2 predominantly where density of proliferating cells is particularly low.

Specimen 6G p21: embryonic day 10.5 (more )
Structure Level Pattern Image Note
TS17: petrosal placode Present Regionally restricted 6G p21 Senescent cells mainly concentrated at periphery. Groups of senescent cells in weakly invaginating epibranchial placode 2 predominantly where density of proliferating cells is particularly low.

Specimen 6H p21: embryonic day 10.5 (more )
Structure Level Pattern Image Note
TS17: petrosal placode Present Regionally restricted 6H p21 Senescent cells mainly concentrated at periphery. Groups of senescent cells in weakly invaginating epibranchial placode 2 predominantly where density of proliferating cells is particularly low.

Specimen 10G: embryonic day 10.5 (more )
Structure Level Pattern Image Note
TS17: petrosal placode Present Regionally restricted 10G Expression at transition from placode tissue to surface ectoderm. Expression virtually absent among densely clustered Neurog2-expressing premigratory neuroblasts.

Specimen 12A,A': embryonic day 9.5 (more )
Structure Level Pattern Image Note
TS15: 2nd branchial pouch endoderm Present Regionally restricted 12A , 12A' Between E9.5 and E10.5, stark contrast between steadily increasing number of expressing endodermal cells in rostral walls, and virtually complete absence of expression in caudal walls of pharyngeal pouch 2.

Specimen 12B: embryonic day 10.0 (more )
Structure Level Pattern Image Note
TS16: 2nd branchial pouch endoderm Present Regionally restricted 12B Between E9.5 and E10.5, stark contrast between steadily increasing number of expressing endodermal cells in rostral walls, and virtually complete absence of expression in caudal walls of pharyngeal pouch 2.

Specimen 12C,C': embryonic day 10.5 (more )
Structure Level Pattern Image Note
TS17: 2nd branchial pouch endoderm Present Regionally restricted 12C' , 12C Between E9.5 and E10.5, stark contrast between steadily increasing number of expressing endodermal cells in rostral walls, and virtually complete absence of expression in caudal walls of pharyngeal pouch 2.

Specimen 12D: embryonic day 9.5 (more )
Structure Level Pattern Image Note
TS15: 3rd branchial pouch endoderm Present Regionally restricted 12D Expressing cells in pharyngeal pouch 3 initially appear dorsally and lateral also ventrally.

Specimen 12E: embryonic day 10.5 (more )
Structure Level Pattern Image Note
TS17: 3rd branchial pouch endoderm Present Regionally restricted 12E pExpressing cells in pharyngeal pouch 3 initially appear dorsally and lateral also ventrally.

Specimen 12F: embryonic day 10.5 (more )
Structure Level Pattern Image Note
TS17: 3rd branchial pouch endoderm Present Regionally restricted 12F From E10.5 onwards, expression in senescent cells in rostral, caudal, dorsal and ventral walls of pharyngeal pouch 3.

Specimen 12G: embryonic day 11.0 (more )
Structure Level Pattern Image Note
TS18: 3rd branchial pouch endoderm Present Regionally restricted 12G From E10.5 onwards, expression in senescent cells in rostral, caudal, dorsal and ventral walls of pharyngeal pouch 3.

Specimen 15A: embryonic day 10.5 (more )
Structure Level Pattern Image Note
TS17: 1st branchial groove ectoderm Present Regionally restricted 15A Expression in branchial surface ectoderm as well as pharyngeal endoderm.
TS17: 1st branchial pouch endoderm Present Regionally restricted 15A Expression in branchial surface ectoderm as well as pharyngeal endoderm.

Specimen 15C: embryonic day 10.5 (more )
Structure Level Pattern Image Note
TS17: 2nd branchial groove ectoderm Present Regionally restricted 15C Expression in branchial surface ectoderm as well as pharyngeal endoderm.
TS17: 2nd branchial pouch endoderm Present Regionally restricted 15C Expression in branchial surface ectoderm as well as pharyngeal endoderm.

Specimen 15E: embryonic day 11.0 (more )
Structure Level Pattern Image Note
TS18: 1st branchial groove ectoderm Present Regionally restricted 15E Expression in branchial surface ectoderm as well as pharyngeal endoderm.
TS18: 1st branchial pouch endoderm Present Regionally restricted 15E Expression in branchial surface ectoderm as well as pharyngeal endoderm.

Specimen 15G: embryonic day 11.0 (more )
Structure Level Pattern Image Note
TS18: 2nd branchial pouch endoderm Present Regionally restricted 15G Expression in pharyngeal endoderm.

Specimen 16A p21: embryonic day 9.0 (more )
Structure Level Pattern Image Note
TS14: 2nd branchial pouch endoderm Absent 16A p21 Rostral walls of pharyngeal pouches typically lack expression.

Specimen 16B p21: embryonic day 9.5 (more )
Structure Level Pattern Image Note
TS15: 2nd branchial pouch endoderm Present Regionally restricted 16B p21 Rostral focus of expressing endodermal cells is established on E9.5. Salt-and-pepper pattern with first rostral expression within Mki67-expressing clusters.

Specimen 16C p21: embryonic day 10.5 (more )
Structure Level Pattern Image Note
TS17: 2nd branchial pouch endoderm Strong Clusters 16C p21 Rostral focus of expressing endodermal cells increases in size and intensity over time. Clusters of strongly expressing endoderm cells, clearly distinguised from clusters of Mki67-expressing cells.

Specimen 16D p21: embryonic day 10.5 (more )
Structure Level Pattern Image Note
TS17: 2nd branchial pouch endoderm Strong Clusters 16D p21 Rostral focus of expressing endodermal cells increases in size and intensity over time. Clusters of strongly expressing endoderm cells, clearly distinguised from clusters of Mki67-expressing cells.

Specimen 16E p21: embryonic day 10.5 (more )
Structure Level Pattern Image Note
TS17: 2nd branchial pouch endoderm Strong Clusters 16E p21 Rostral focus of expressing endodermal cells increases in size and intensity over time. Clusters of strongly expressing endoderm cells, clearly distinguised from clusters of Mki67-expressing cells.

Specimen 16F p21: embryonic day 10.5 (more )
Structure Level Pattern Image Note
TS17: 2nd branchial pouch endoderm Strong Clusters 16F p21 Rostral focus of expressing endodermal cells increases in size and intensity over time. Clusters of strongly expressing endoderm cells, clearly distinguised from clusters of Mki67-expressing cells.


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Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/25/2025
MGI 6.24
The Jackson Laboratory