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Gene Expression Data
Assay Details
Assay
Reference: J:186285 Lefkovics K, et al., Comparative analysis of type II classic cadherin mRNA distribution patterns in the developing and adult mouse somatosensory cortex and hippocampus suggests significant functional redundancy. J Comp Neurol. 2012 May 1;520(7):1387-1405
Assay type: RNA in situ
MGI Accession ID: MGI:7492291
Gene symbol: Cdh7
Gene name: cadherin 7, type 2
Probe: Cdh7 cDNA
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Assay notes: Using another probe (MGI:6169498) based on the Allen Brain Atlas probe information showed identical expression pattern.
Results
Specimen 3B: postnatal adult (more )
Structure Level Pattern Image Note
TS28: somatosensory cortex Present 3B

Specimen 4D: embryonic day 14.0 (more )
Structure Cell Type Level Pattern Image Note
TS22: hippocampus GABAergic interneuron Present Regionally restricted 4D Expressed in the ammonic neuroepithelium/preplate. Summarized in Table 3.
TS22: hippocampus Cajal-Retzius cell Absent 4D Not expressed in the marginal zone, consisting mainly of calretinin-positive Cajal-Retzius cells. Summarized in Table 3.

Specimen 4E: embryonic day 16.5 (more )
Structure Level Pattern Image Note
TS24: hippocampus ventricular layer Present 4E Summarized in Table 3.
TS24: dentate gyrus Present Regionally restricted 4E Expressed in the dentate marginal zone and hilus. Weak expression in the ventricular zone.
TS24: hippocampus Present Regionally restricted 4E Expressed in the subplate, the marginal zone and the hippocampal plate. Very low expression in the intermediate zone. Summarized in Table 3.

Specimen 4F: postnatal day 1 (more )
Structure Level Pattern Image Note
TS27: dentate gyrus hilus Present 4F Summarized in Table 3.
TS27: dentate gyrus molecular layer Present 4F Summarized in Table 3.
TS27: hippocampus molecular layer Present 4F Summarized in Table 3.
TS27: hippocampus stratum lacunosum Present 4F Summarized in Table 3.
TS27: hippocampus stratum lucidum Present 4F Summarized in Table 3.
TS27: hippocampus stratum oriens Present 4F Summarized in Table 3.
TS27: hippocampus pyramidal cell layer Present 4F Expressed at the same level in CA1 and CA3.

Specimen 6B1: postnatal day 10 (more )
Structure Level Pattern Image Note
TS28: hippocampus stratum oriens Present Single cells 6B1 Expressed only in a few cells.
TS28: CA1 pyramidal cell layer Present 6B1
TS28: hippocampus molecular layer Absent 6B1
TS28: hippocampus stratum lacunosum Absent 6B1
TS28: hippocampus stratum radiatum Trace 6B1

Specimen 6B2: postnatal adult (more )
Structure Level Pattern Image Note
TS28: hippocampus stratum oriens Present Single cells 6B2 Expressed only in a few cells.
TS28: CA1 pyramidal cell layer Present 6B2
TS28: hippocampus molecular layer Present 6B2
TS28: hippocampus stratum lacunosum Present 6B2
TS28: hippocampus stratum radiatum Present 6B2

Specimen 6B3: postnatal day 10 (more )
Structure Level Pattern Image Note
TS28: CA3 pyramidal cell layer Present 6B3
TS28: hippocampus stratum lucidum Absent 6B3

Specimen 6B4: postnatal adult (more )
Structure Level Pattern Image Note
TS28: CA3 pyramidal cell layer Strong 6B4
TS28: hippocampus stratum lucidum Present 6B4

Specimen 6B5: postnatal day 10 (more )
Structure Level Pattern Image Note
TS28: dentate gyrus granule cell layer Trace 6B5 Barely detectable.
TS28: dentate gyrus hilus Present 6B5

Specimen 6B6: postnatal adult (more )
Structure Level Pattern Image Note
TS28: dentate gyrus granule cell layer Trace 6B6 Barely detectable.
TS28: dentate gyrus hilus Present 6B6

Specimen 8B: postnatal day 10 (more )
Structure Level Pattern Image Note
TS28: hippocampus stratum radiatum Trace 8B

Specimen 9B1: embryonic day 14.0 (more )
Note: Summarized in Fig. 11.
Structure Level Pattern Image Note
TS22: cerebral cortex marginal layer Present 9B1
TS22: cerebral cortex ventricular layer Present 9B1
TS22: cortical subplate Present 9B1
TS22: cerebral cortex intermediate zone Absent 9B1
TS22: cerebral cortex subventricular zone Absent 9B1
TS22: cortical plate Absent 9B1

Specimen 9B2: embryonic day 16.0 (more )
Note: Summarized in Fig. 11.
Structure Level Pattern Image Note
TS24: cerebral cortex intermediate zone Present 9B2
TS24: cerebral cortex marginal layer Present 9B2
TS24: cerebral cortex subventricular zone Present 9B2
TS24: cerebral cortex ventricular layer Present 9B2
TS24: cortical plate Present 9B2
TS24: cortical subplate Absent 9B2

Specimen 9B3: embryonic day 18.0 (more )
Structure Level Pattern Image Note
TS26: cerebral cortex ventricular layer Present 9B3

Specimen 9B4: postnatal day 1 (more )
Note: Summarized in Fig. 11.
Structure Level Pattern Image Note
TS27: cerebral cortex intermediate zone Absent 9B4
TS27: cortical layer I Present 9B4
TS27: cortical layer II Present 9B4
TS27: cortical layer III Present 9B4
TS27: cortical layer IV Present 9B4
TS27: cortical layer V Present 9B4
TS27: cortical layer VI Present 9B4
TS27: cortical subplate Present 9B4

Specimen 9B5: postnatal day 10 (more )
Note: Summarized in Fig. 11.
Structure Level Pattern Image Note
TS28: cerebral hemisphere white matter Absent 9B5
TS28: cortical layer I Absent 9B5
TS28: cortical layer II Present 9B5
TS28: cortical layer III Present 9B5
TS28: cortical layer IV Present 9B5
TS28: cortical layer V Present 9B5
TS28: cortical layer VI Present 9B5
TS28: cortical subplate Present 9B5

Specimen 9B6: postnatal adult (more )
Note: Summarized in Fig. 11.
Structure Level Pattern Image Note
TS28: cerebral hemisphere white matter Absent 9B6
TS28: cortical layer I Absent 9B6
TS28: cortical layer II Present 9B6
TS28: cortical layer III Present 9B6
TS28: cortical layer IV Present 9B6
TS28: cortical layer V Present 9B6
TS28: cortical layer VI Present 9B6
TS28: cortical subplate Present 9B6


Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
04/23/2024
MGI 6.23
The Jackson Laboratory