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Gene Expression Data
Assay Details
Assay
Reference: J:336450 Kasah S, et al., Autism-linked CHD gene expression patterns during development predict multi-organ disease phenotypes. J Anat. 2018 Dec;233(6):755-769
Assay type: RNA in situ
MGI Accession ID: MGI:7491682
Gene symbol: Chd2
Gene name: chromodomain helicase DNA binding protein 2
Probe: Chd2 probe
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Results
Specimen 1C: embryonic day 12.5 (more )
Structure Level Pattern Image Note
TS20: embryo Weak Widespread 1C Very low, widespread expression in many tissues.
TS20: brain Weak Diffuse 1C
TS20: spinal cord Weak Diffuse 1C
TS20: paraxial mesenchyme Weak Regionally restricted 1C Diffuse expression in intersomitic regions.

Specimen 1Ca: embryonic day 12.5 (more )
Structure Level Pattern Image Note
TS20: cerebellum primordium Weak Regionally restricted 1Ca Little expression in neuroepithelium.

Specimen 1Cb: embryonic day 12.5 (more )
Structure Level Pattern Image Note
TS20: neocortex Trace 1Cb Little discernible expression.

Specimen 3C: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS22: embryo Weak Widespread 3C Expression was low and widespread. Distinct expression patterns throughout embryo.
TS22: nervous system Present 3C Notably higher levels in developing nervous system.
TS22: incisor Present 3C
TS22: olfactory epithelium Present 3C
TS22: tongue Present 3C
TS22: gut Present 3C
TS22: hindlimb digit Present 3C
TS22: liver Present 3C
TS22: lung Present 3C
TS22: metanephros Present 3C
TS22: muscle tissue Present 3C
TS22: thymus primordium Present 3C
TS22: thyroid gland Present 3C

Specimen 3Ca: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS22: cerebellum ventricular layer Present 3Ca
TS22: rhombic lip Present 3Ca

Specimen 3Cb: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS22: neocortex Strong 3Cb

Specimen 3Cc: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS22: lens Present 3Cc
TS22: neural retina Present 3Cc
TS22: perioptic mesenchyme Present 3Cc Expression in anatomical space containing the optic nerve and its surrounding structures.

Specimen 3Cd: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS22: lung epithelium Present 3Cd

Specimen 3Ce: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS22: cap mesenchyme Present 3Ce Expression in condensing mesenchyme of kidney.

Specimen 4C: postnatal newborn (more )
Structure Level Pattern Image Note
TS27: neocortex Present Regionally restricted 4C Expression highly localized in neocortex. Expression enriched in outer neocortex
TS27: hypothalamus Present 4C
TS27: midbrain Present 4C
TS27: pons Present 4C
TS27: superior olivary nucleus Present 4C
TS27: cerebellum Present 4C

Specimen 4C': postnatal newborn (more )
Structure Level Pattern Image Note
TS27: neocortex Present Regionally restricted 4C' Expression highly localized in neocortex. Expression enriched in outer neocortex
TS27: hypothalamus Present 4C'
TS27: midbrain Present 4C'
TS27: cerebellum Present 4C'

Specimen 4Ca: postnatal newborn (more )
Structure Level Pattern Image Note
TS27: cerebellum Moderate Diffuse 4Ca

Specimen 4Cb: postnatal newborn (more )
Structure Level Pattern Image Note
TS27: neocortex Present Regionally restricted 4Cb Expression enriched in outer neocortex.

Specimen 5C: postnatal day 7 (more )
Structure Level Pattern Image Note
TS28: brain Present Widespread 5C
TS28: cerebellum Present 5C
TS28: hippocampus Present 5C
TS28: neocortex Present 5C

Specimen 5C': postnatal day 7 (more )
Structure Level Pattern Image Note
TS28: brain Present Widespread 5C'
TS28: cerebellum Present 5C'
TS28: hippocampus Present 5C'
TS28: main olfactory bulb Present 5C'
TS28: neocortex Present 5C'
TS28: rostral migratory stream Present 5C'

Specimen 5Ca: postnatal day 7 (more )
Structure Level Pattern Image Note
TS28: cerebellum Strong 5Ca

Specimen 5Cb: postnatal day 7 (more )
Structure Level Pattern Image Note
TS28: dentate gyrus Present 5Cb
TS28: hippocampus CA1 Present 5Cb
TS28: hippocampus CA2 Present 5Cb
TS28: hippocampus CA3 Present 5Cb

Specimen 5Cc: postnatal day 7 (more )
Structure Level Pattern Image Note
TS28: cortical layer II Present 5Cc
TS28: cortical layer III Present 5Cc

Specimen 6C: postnatal day 20 (more )
Structure Level Pattern Image Note
TS28: cerebellum Strong 6C
TS28: hippocampus Strong 6C
TS28: main olfactory bulb Strong 6C
TS28: neocortex Strong 6C
TS28: rostral migratory stream Strong 6C

Specimen 6C': postnatal day 20 (more )
Structure Level Pattern Image Note
TS28: cerebellum Strong 6C'
TS28: hippocampus Strong 6C'
TS28: neocortex Strong 6C'

Specimen 6Ca: postnatal day 20 (more )
Structure Level Pattern Image Note
TS28: cerebellum granule cell layer Present 6Ca

Specimen 6Cb: postnatal day 20 (more )
Structure Level Pattern Image Note
TS28: dentate gyrus Present 6Cb
TS28: hippocampus CA1 Present 6Cb
TS28: hippocampus CA2 Present 6Cb
TS28: hippocampus CA3 Present 6Cb
TS28: hippocampus Weak Diffuse 6Cb Expression in hippocampus lower and more diffuse compared to that of Chd8.

Specimen 6Cc: postnatal day 20 (more )
Structure Level Pattern Image Note
TS28: neocortex Present 6Cc


Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
04/23/2024
MGI 6.23
The Jackson Laboratory