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Gene Expression Data
Assay Details
Assay
Reference: J:336450 Kasah S, et al., Autism-linked CHD gene expression patterns during development predict multi-organ disease phenotypes. J Anat. 2018 Dec;233(6):755-769
Assay type: RNA in situ
MGI Accession ID: MGI:7491680
Gene symbol: Chd8
Gene name: chromodomain helicase DNA binding protein 8
Probe: Chd8 probe
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Results
Specimen 1A: embryonic day 12.5 (more )
Structure Level Pattern Image Note
TS20: embryo Present Widespread 1A Expression in most embryonic tissues.
TS20: central nervous system Present Regionally restricted 1A Expression throughout neuroepithelium of developing central nervous system.
TS20: cerebellum primordium Present 1A
TS20: neocortex Present 1A
TS20: hindbrain floor plate Present 1A
TS20: lower rhombic lip Present 1A
TS20: dorsal root ganglion Present 1A
TS20: spinal cord Present 1A
TS20: diencephalon Strong 1A
TS20: hypothalamus Strong 1A
TS20: pituitary gland Strong 1A
TS20: olfactory epithelium Present 1A
TS20: tongue Present 1A
TS20: paraxial mesenchyme Present Regionally restricted 1A Expression in intersomitic mesoderm
TS20: genital tubercle Present 1A
TS20: gut Present 1A
TS20: lung Present 1A
TS20: tail Present 1A

Specimen 1Aa: embryonic day 12.5 (more )
Structure Level Pattern Image Note
TS20: cerebellum primordium Present Regionally restricted 1Aa Expression in ventricular zone.
TS20: rhombic lip Present 1Aa
TS20: midbrain-hindbrain junction Present 1Aa Expression in isthmus.

Specimen 1Ab: embryonic day 12.5 (more )
Structure Level Pattern Image Note
TS20: neocortex Present Widespread 1Ab
TS20: cerebral cortex subventricular zone Present Widespread 1Ab Expression throughout ventricular and subventricular regions of neocortex.
TS20: cerebral cortex ventricular layer Present Widespread 1Ab Expression throughout ventricular and subventricular regions of neocortex.

Specimen S1A: embryonic day 12.5 (more )
Structure Level Pattern Image Note
TS20: spinal cord Present Widespread S1A Expression throughout length of neural tube.
TS20: dorsal root ganglion Present S1A

Specimen S1B: embryonic day 12.5 (more )
Structure Level Pattern Image Note
TS20: spinal cord Present Widespread S1B Expression throughout length of neural tube.
TS20: paraxial mesenchyme Present Regionally restricted S1B Expression in intersomitic regions.

Specimen S1C: embryonic day 12.5 (more )
Structure Level Pattern Image Note
TS20: spinal cord Present S1C No mediolateral or dorsoventral gradient.
TS20: dorsal root ganglion Present S1C
TS20: eye Present S1C

Specimen S1D: embryonic day 12.5 (more )
Structure Level Pattern Image Note
TS20: spinal cord Present S1D No mediolateral or dorsoventral gradient.
TS20: dorsal root ganglion Present S1D

Specimen 2A: embryonic day 12.5 (more )
Structure Level Pattern Image Note
TS20: cochlear duct epithelium Present 2A
TS20: vestibulo-cochlear ganglion Present 2A

Specimen 2B: embryonic day 12.5 (more )
Structure Level Pattern Image Note
TS20: metanephros Strong Regionally restricted 2B High expression in mesenchyme and metanephric tubule epithelium.
TS20: cap mesenchyme Present 2B

Specimen 2C: embryonic day 12.5 (more )
Structure Level Pattern Image Note
TS20: lung epithelium Present 2C

Specimen 2D: embryonic day 12.5 (more )
Structure Level Pattern Image Note
TS20: neural retina Present 2D
TS20: pigmented retinal epithelium Present 2D
TS20: head mesenchyme Present Widespread 2D Expression present widely throughout surrounding mesenchyme and craniofacial tissues.

Specimen 2E: embryonic day 12.5 (more )
Structure Level Pattern Image Note
TS20: tooth bud Strong Regionally restricted 2E High expression in incisor primordium.

Specimen 3A: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS22: embryo Present Regionally restricted 3A Distinct expression patterns throughout embryo.
TS22: nervous system Strong Regionally restricted 3A Notably higher levels in developing nervous system.
TS22: forebrain Strong Regionally restricted 3A Prominent expression in basal forebrain.
TS22: cerebellum Present 3A
TS22: neocortex Present 3A
TS22: diencephalon Weak Diffuse 3A
TS22: midbrain Weak Diffuse 3A
TS22: spinal cord Weak 3A
TS22: incisor Present 3A
TS22: olfactory epithelium Present 3A
TS22: tongue Present 3A
TS22: gut Present 3A
TS22: lung Present 3A
TS22: metanephros Present 3A
TS22: heart Present 3A
TS22: hindlimb digit Present 3A
TS22: liver Present 3A
TS22: stomach epithelium Present 3A
TS22: thymus primordium Present 3A
TS22: thyroid gland Present 3A
TS22: trigeminal ganglion Present 3A

Specimen 3Aa: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS22: cerebellum ventricular layer Strong 3Aa
TS22: rhombic lip Strong 3Aa

Specimen 3Ab: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS22: cerebral cortex mantle layer Present Regionally restricted 3Ab
TS22: cerebral cortex subventricular zone Present Regionally restricted 3Ab
TS22: cerebral cortex ventricular layer Present Regionally restricted 3Ab
TS22: neocortex Present Regionally restricted 3Ab

Specimen 3Ac: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS22: lens Present 3Ac
TS22: neural retina Present 3Ac

Specimen 3Ad: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS22: lung epithelium Present 3Ad

Specimen 3Ae: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS22: cap mesenchyme Present 3Ae Expression in condensing mesenchyme of kidney.

Specimen 4A: postnatal newborn (more )
Structure Level Pattern Image Note
TS27: brain Present Widespread 4A
TS27: hippocampus Present 4A
TS27: hypothalamus Present 4A
TS27: main olfactory bulb Present 4A

Specimen 4A': postnatal newborn (more )
Structure Level Pattern Image Note
TS27: brain Present Widespread 4A'
TS27: hippocampus Present 4A'
TS27: hypothalamus Present 4A'
TS27: main olfactory bulb Present 4A'

Specimen 4Aa: postnatal newborn (more )
Structure Level Pattern Image Note
TS27: cerebellum Moderate Diffuse 4Aa

Specimen 4Ab: postnatal newborn (more )
Structure Level Pattern Image Note
TS27: neocortex Present Regionally restricted 4Ab Slight enrichment of expression towards outer neocortex.

Specimen 5A: postnatal day 7 (more )
Structure Level Pattern Image Note
TS28: brain Present Widespread 5A
TS28: cerebellum Present 5A
TS28: hippocampus Present 5A
TS28: neocortex Present 5A

Specimen 5A': postnatal day 7 (more )
Structure Level Pattern Image Note
TS28: brain Present Widespread 5A'
TS28: cerebellum Present 5A'
TS28: hippocampus Present 5A'
TS28: main olfactory bulb Present 5A'
TS28: neocortex Present 5A'
TS28: rostral migratory stream Present 5A'

Specimen 5Aa: postnatal day 7 (more )
Structure Level Pattern Image Note
TS28: cerebellum Strong 5Aa

Specimen 5Ab: postnatal day 7 (more )
Structure Level Pattern Image Note
TS28: dentate gyrus Present 5Ab
TS28: hippocampus CA1 Present 5Ab
TS28: hippocampus CA2 Present 5Ab
TS28: hippocampus CA3 Present 5Ab

Specimen 5Ac: postnatal day 7 (more )
Structure Level Pattern Image Note
TS28: cortical layer II Present 5Ac
TS28: cortical layer III Present 5Ac

Specimen 6A: postnatal day 20 (more )
Structure Level Pattern Image Note
TS28: cerebellum Present 6A
TS28: hippocampus Present 6A
TS28: neocortex Present 6A
TS28: rostral migratory stream Present 6A

Specimen 6A': postnatal day 20 (more )
Structure Level Pattern Image Note
TS28: cerebellum Present 6A'
TS28: main olfactory bulb Present 6A'
TS28: neocortex Present 6A'

Specimen 6Aa: postnatal day 20 (more )
Structure Level Pattern Image Note
TS28: cerebellum granule cell layer Present 6Aa

Specimen 6Ab: postnatal day 20 (more )
Structure Level Pattern Image Note
TS28: dentate gyrus Present 6Ab
TS28: hippocampus CA1 Present 6Ab
TS28: hippocampus CA2 Present 6Ab
TS28: hippocampus CA3 Present 6Ab

Specimen 6Ac: postnatal day 20 (more )
Structure Level Pattern Image Note
TS28: neocortex Present 6Ac


Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
05/07/2024
MGI 6.23
The Jackson Laboratory