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Gene Expression Data
Assay Details
Assay
Reference: J:89191 Mo Z, et al., Role of the Barhl2 homeobox gene in the specification of glycinergic amacrine cells. Development. 2004 Apr;131(7):1607-18
Assay type: RNA in situ
MGI Accession ID: MGI:7467322
Gene symbol: Barhl2
Gene name: BarH like homeobox 2
Probe: Barhl2 cDNA
Probe preparation: Antisense labelled with digoxigenin RNA
Results
Specimen 1A: embryonic day 9.5 (more )
Structure Level Pattern Image Note
TS15: diencephalon Present Regionally restricted 1A Expression is in two symmetric stripes.

Specimen 1B: embryonic day 11.5 (more )
Structure Level Pattern Image Note
TS19: diencephalon Present Regionally restricted 1B Expression is in two symmetric stripes.
TS19: midbrain Present Regionally restricted 1B Expression is in two symmetric stripes.
TS19: neural tube Present Regionally restricted 1B Expression is in two symmetric stripes.

Specimen 1C: embryonic day 12.5 (more )
Structure Level Pattern Image Note
TS20: spinal cord lateral wall Present Regionally restricted 1C Expression is in the D1 dorsal sensory interneurons.

Specimen 1D: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS22: spinal cord mantle layer Present Regionally restricted 1D Expression is in two small lateral columns between the alar and basal plates.

Specimen 1E: embryonic day 14.5 (more )
Structure Cell Type Level Pattern Image Note
TS22: piriform cortex neuron Present 1E
TS22: telencephalon Present Regionally restricted 1E Expression is in the diagonal band.
TS22: epithalamus Present 1E
TS22: preoptic area Present 1E
TS22: retina Present 1E
TS22: thalamus Present Regionally restricted 1E Expression is in the intermediate thalamic neuroepithelia and ventral thalamus.

Specimen 1F: embryonic day 14.5 (more )
Structure Cell Type Level Pattern Image Note
TS22: piriform cortex neuron Present 1F
TS22: telencephalon Present Regionally restricted 1F Expression is in the diagonal band.
TS22: epithalamus Present 1F
TS22: preoptic area Present 1F
TS22: thalamus Present Regionally restricted 1F Expression is in the intermediate thalamic neuroepithelia and ventral thalamus.

Specimen 1G: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS22: inferior colliculus Present 1G
TS22: mammillary area Present 1G
TS22: midbrain tegmentum Present 1G
TS22: preoptic area Present 1G
TS22: superior colliculus Present 1G
TS22: midbrain Present Regionally restricted 1G Expression is in the periaqueductal gray area.

Specimen 1H: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS22: inferior colliculus Present 1H
TS22: midbrain tegmentum Present 1H
TS22: superior colliculus Present 1H
TS22: midbrain Present Regionally restricted 1H Expression is in the periaqueductal gray area.
TS22: hindbrain Present Regionally restricted 1H Expression is in the anterior extramural migratory stream and is absent from any of the precerebellar nuclei, including the pontine gray and reticulotegmental nuclei derived from the anterior extramural migratory stream.
TS22: medulla oblongata Present Regionally restricted 1H Expression is in principal and spinal trigeminal nuclei.
TS22: cerebellum Absent 1H

Specimen 1I: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS22: hindbrain Present Regionally restricted 1I Expression is in the anterior extramural migratory stream and is absent from any of the precerebellar nuclei, including the pontine gray and reticulotegmental nuclei derived from the anterior extramural migratory stream.
TS22: cerebellum Absent 1I

Specimen 1J: postnatal day 1 (more )
Structure Cell Type Level Pattern Image Note
TS27: nucleus of diagonal band Present 1J
TS27: piriform cortex neuron Present 1J

Specimen 1K: postnatal day 1 (more )
Structure Cell Type Level Pattern Image Note
TS27: epithalamus Present 1K
TS27: mammillary body Present 1K
TS27: nucleus of diagonal band Present 1K
TS27: paraventricular hypothalamic nucleus Present 1K
TS27: preoptic area Present 1K
TS27: piriform cortex neuron Present 1K
TS27: thalamus Present Regionally restricted 1K Expression is in the intermediate thalamic neuroepithelia and ventral thalamus.

Specimen 1L: postnatal day 1 (more )
Structure Level Pattern Image Note
TS27: epithalamus Present 1L
TS27: paraventricular hypothalamic nucleus Present 1L

Specimen 1M: postnatal day 1 (more )
Structure Level Pattern Image Note
TS27: inferior colliculus Present 1M
TS27: mammillary body Present 1M
TS27: midbrain tegmentum Present 1M
TS27: periaqueductal grey Present 1M
TS27: superior colliculus Present 1M

Specimen 1N: postnatal day 1 (more )
Structure Level Pattern Image Note
TS27: cerebellum external granule cell layer Present 1N
TS27: inferior colliculus Present 1N
TS27: midbrain tegmentum Present 1N
TS27: periaqueductal grey Present 1N
TS27: superior colliculus Present 1N
TS27: trigeminal V spinal sensory nucleus Present 1N
TS27: trigeminal nucleus Present 1N
TS27: cerebellum Present Regionally restricted 1N Expression is in the upper rhombic lip.

Specimen 1O: postnatal day 1 (more )
Structure Level Pattern Image Note
TS27: cerebellum external granule cell layer Present 1O
TS27: cerebellum Present Regionally restricted 1O Expression is in the upper rhombic lip.

Specimen 1P: postnatal day 1 (more )
Structure Level Pattern Image Note
TS27: mammillary body Present 1P
TS27: pontine nucleus Absent 1P
TS27: reticular tegmental nucleus Absent 1P

Specimen 2A: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS22: neural retina Present Regionally restricted 2A Expression is in the inner neuroblastic layer.

Specimen 2B: postnatal day 1 (more )
Structure Level Pattern Image Note
TS27: retina ganglion cell layer Present 2B
TS27: retina inner nuclear layer Present 2B


Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
05/21/2024
MGI 6.23
The Jackson Laboratory