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Gene Expression Data
Assay Details
Assay
Reference: J:93585 Leung KM, et al., Expression of phosphacan and neurocan during early development of mouse retinofugal pathway. Brain Res Dev Brain Res. 2004 Aug 18;152(1):1-10
Assay type: Immunohistochemistry
MGI Accession ID: MGI:7442866
Gene symbol: Ptprz1
Gene name: protein tyrosine phosphatase receptor type Z, polypeptide 1
Antibody: anti-Phosphacan
Detection system: Secondary antibody coupled to fluorescein
Results
Specimen 1A: embryonic day 13.5 (more )
Structure Level Pattern Image Note
TS21: lens Very strong 1A
TS21: neural retina Very strong 1A Expression is in all regions of the retina particularly at the peripheral margin and the inner layer of the retina, which include the optic nerve fiber layer and the optic disc.

Specimen 1B: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS22: retina Present Regionally restricted 1B Expression is in a laminated pattern in the inner regions of the retina and is weak at the outer region adjacent to the pigment epithelium.

Specimen 1C: embryonic day 15.5 (more )
Structure Level Pattern Image Note
TS23: retina Present Regionally restricted 1C Expression is in a laminated pattern in the inner regions of the retina and is weak at the outer region adjacent to the pigment epithelium.

Specimen 1D: embryonic day 15.5 (more )
Structure Level Pattern Image Note
TS23: retina layer Very strong Regionally restricted 1D Expression is at the optic fiber layer and a cell-rich layer within the inner parts of the retina.
TS23: retina Weak Regionally restricted 1D Expression is in the outer margin of the retina, adjacent to the pigment epithelium.

Specimen 2A: embryonic day 13.5 (more )
Structure Level Pattern Image Note
TS21: diencephalon Very strong Regionally restricted 2A Expression is in distinct domains in the optic pathway. Expression is in the glial-like profiles that radiate from the third ventricle and in an inverted V-shaped array in the caudal parts of the diencephalon.
TS21: optic stalk Absent 2A

Specimen 2B: embryonic day 13.5 (more )
Structure Level Pattern Image Note
TS21: diencephalon Very strong Regionally restricted 2B Expression is adjacent to the stalk labeling the profiles that extend from the third ventricle to the pial surface of the brain.
TS21: optic stalk Absent 2B

Specimen 2C: embryonic day 13.5 (more )
Structure Level Pattern Image Note
TS21: diencephalon Very strong Regionally restricted 2C Expression is in the glial-like profiles that radiate from the third ventricle and in an inverted V-shaped array in the caudal parts of the diencephalon. Expression is absent in axon-like profiles in the chiasm.

Specimen 2I: embryonic day 13.5 (more )
Structure Level Pattern Image Note
TS21: diencephalon Very strong Regionally restricted 2I Expression is in the glial-like profiles that radiate from the third ventricle and in an inverted V-shaped array in the caudal parts of the diencephalon.

Specimen 2J: embryonic day 13.5 (more )
Structure Level Pattern Image Note
TS21: diencephalon Present Regionally restricted 2J Expression is adjacent to the stalk labeling the profiles that extend from the third ventricle to the pial surface of the brain.

Specimen 3A: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS22: diencephalon Present Regionally restricted 3A Expression is in a strip of strongly labeled area, cut transversely in horizontal sections. In the optic pathway expression was weak in the stalk and the tract and the staining in the chiasm was reduced substantially in regions flanking both sides of the midline.

Specimen 3B: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS22: diencephalon Present Regionally restricted 3B Expression is in a strip of strongly labeled area, cut transversely in horizontal sections.

Specimen 3C: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS22: diencephalon Present Regionally restricted 3C In the optic pathway expression was weak in the stalk and the tract and the staining in the chiasm was reduced substantially in regions flanking both sides of the midline. Expression is in regions caudal to the chiasm, in a configuration mimicking the chiasmatic neurons.

Specimen 5A: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS22: diencephalon Present Regionally restricted 5A Expression is in the lateral regions of the ventral diencephalon, marking some radial glial like profiles that extend from the third ventricle.
TS22: optic stalk Weak 5A

Specimen 5B: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS22: diencephalon Present Regionally restricted 5B In this section cut across the mid-chiasm, expression was observed in the lateral regions and at the midline of the chiasm and the paramidline regions were weakly stained.

Specimen 5C: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS22: optic tract Present Regionally restricted 5C Expression is in the deep but not the subpial regions of the tract.

Specimen 6A: embryonic day 15.5 (more )
Structure Level Pattern Image Note
TS23: diencephalon Strong Regionally restricted 6A Expression is at the lateral region of the mid-chiasm. Expression was reduced in the medial regions of the chiasm, except the midline, where an expression-rich raphe was observed extending from the chiasmatic neurons in the caudal regions of the diencephalon.
TS23: optic stalk Moderate 6A
TS23: optic tract Moderate 6A

Specimen 6B: embryonic day 15.5 (more )
Structure Level Pattern Image Note
TS23: diencephalon Strong Regionally restricted 6B Expression is at the lateral region of the mid-chiasm. Expression was reduced in the medial regions of the chiasm, except the midline, where an expression-rich raphe was observed extending from the chiasmatic neurons in the caudal regions of the diencephalon.
TS23: optic stalk Moderate 6B
TS23: optic tract Moderate 6B


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Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
04/23/2024
MGI 6.23
The Jackson Laboratory