Gene Expression Data
Assay Details
Assay
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Reference:
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J:93585
Leung KM, et al., Expression of phosphacan and neurocan during early development of mouse retinofugal pathway. Brain Res Dev Brain Res. 2004 Aug 18;152(1):1-10
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Assay type:
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Immunohistochemistry
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MGI Accession ID:
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MGI:7442866
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Gene symbol:
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Ptprz1
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Gene name:
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protein tyrosine phosphatase receptor type Z, polypeptide 1
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Antibody:
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anti-Phosphacan
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Detection system:
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Secondary antibody coupled to fluorescein
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Results
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Specimen
1A:
embryonic day 13.5
(more )
Specimen
1A:
(close )
Genetic Background:
|
C57
|
Age:
|
embryonic day 13.5
|
Age Note:
|
Age normalized so that noon of plug day = E0.5.
|
Sex:
|
Not Specified
|
Type:
|
optical section
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Fixation:
|
4% Paraformaldehyde
|
Embedding:
|
Gelatin
|
Structure |
Level |
Pattern |
Image |
Note |
TS21: lens |
Very strong |
|
1A
|
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TS21: neural retina |
Very strong |
|
1A
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Expression is in all regions of the retina particularly at the peripheral margin and the inner layer of the retina, which include the optic nerve fiber layer and the optic disc.
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Specimen
1B:
embryonic day 14.5
(more )
Specimen
1B:
(close )
Genetic Background:
|
C57
|
Age:
|
embryonic day 14.5
|
Age Note:
|
Age normalized so that noon of plug day = E0.5.
|
Sex:
|
Not Specified
|
Type:
|
optical section
|
Fixation:
|
4% Paraformaldehyde
|
Embedding:
|
Gelatin
|
Structure |
Level |
Pattern |
Image |
Note |
TS22: retina |
Present |
Regionally restricted |
1B
|
Expression is in a laminated pattern in the inner regions of the retina and is weak at the outer region adjacent to the pigment epithelium.
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Specimen
1C:
embryonic day 15.5
(more )
Specimen
1C:
(close )
Genetic Background:
|
C57
|
Age:
|
embryonic day 15.5
|
Age Note:
|
Age normalized so that noon of plug day = E0.5.
|
Sex:
|
Not Specified
|
Type:
|
optical section
|
Fixation:
|
4% Paraformaldehyde
|
Embedding:
|
Gelatin
|
Structure |
Level |
Pattern |
Image |
Note |
TS23: retina |
Present |
Regionally restricted |
1C
|
Expression is in a laminated pattern in the inner regions of the retina and is weak at the outer region adjacent to the pigment epithelium.
|
Specimen
1D:
embryonic day 15.5
(more )
Specimen
1D:
(close )
Genetic Background:
|
C57
|
Age:
|
embryonic day 15.5
|
Age Note:
|
Age normalized so that noon of plug day = E0.5.
|
Sex:
|
Not Specified
|
Type:
|
optical section
|
Fixation:
|
4% Paraformaldehyde
|
Embedding:
|
Gelatin
|
Structure |
Level |
Pattern |
Image |
Note |
TS23: retina layer |
Very strong |
Regionally restricted |
1D
|
Expression is at the optic fiber layer and a cell-rich layer within the inner parts of the retina.
|
TS23: retina |
Weak |
Regionally restricted |
1D
|
Expression is in the outer margin of the retina, adjacent to the pigment epithelium.
|
Specimen
2A:
embryonic day 13.5
(more )
Specimen
2A:
(close )
Genetic Background:
|
C57
|
Age:
|
embryonic day 13.5
|
Age Note:
|
Age normalized so that noon of plug day = E0.5.
|
Sex:
|
Not Specified
|
Type:
|
optical section
|
Fixation:
|
4% Paraformaldehyde
|
Embedding:
|
Gelatin
|
Structure |
Level |
Pattern |
Image |
Note |
TS21: diencephalon |
Very strong |
Regionally restricted |
2A
|
Expression is in distinct domains in the optic pathway. Expression is in the glial-like profiles that radiate from the third ventricle and in an inverted V-shaped array in the caudal parts of the diencephalon.
|
TS21: optic stalk |
Absent |
|
2A
|
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Specimen
2B:
embryonic day 13.5
(more )
Specimen
2B:
(close )
Genetic Background:
|
C57
|
Age:
|
embryonic day 13.5
|
Age Note:
|
Age normalized so that noon of plug day = E0.5.
|
Sex:
|
Not Specified
|
Type:
|
optical section
|
Fixation:
|
4% Paraformaldehyde
|
Embedding:
|
Gelatin
|
Structure |
Level |
Pattern |
Image |
Note |
TS21: diencephalon |
Very strong |
Regionally restricted |
2B
|
Expression is adjacent to the stalk labeling the profiles that extend from the third ventricle to the pial surface of the brain.
|
TS21: optic stalk |
Absent |
|
2B
|
|
Specimen
2C:
embryonic day 13.5
(more )
Specimen
2C:
(close )
Genetic Background:
|
C57
|
Age:
|
embryonic day 13.5
|
Age Note:
|
Age normalized so that noon of plug day = E0.5.
|
Sex:
|
Not Specified
|
Type:
|
optical section
|
Fixation:
|
4% Paraformaldehyde
|
Embedding:
|
Gelatin
|
Structure |
Level |
Pattern |
Image |
Note |
TS21: diencephalon |
Very strong |
Regionally restricted |
2C
|
Expression is in the glial-like profiles that radiate from the third ventricle and in an inverted V-shaped array in the caudal parts of the diencephalon. Expression is absent in axon-like profiles in the chiasm.
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Specimen
2I:
embryonic day 13.5
(more )
Specimen
2I:
(close )
Genetic Background:
|
C57
|
Age:
|
embryonic day 13.5
|
Age Note:
|
Age normalized so that noon of plug day = E0.5.
|
Sex:
|
Not Specified
|
Type:
|
optical section
|
Fixation:
|
4% Paraformaldehyde
|
Embedding:
|
Gelatin
|
Structure |
Level |
Pattern |
Image |
Note |
TS21: diencephalon |
Very strong |
Regionally restricted |
2I
|
Expression is in the glial-like profiles that radiate from the third ventricle and in an inverted V-shaped array in the caudal parts of the diencephalon.
|
Specimen
2J:
embryonic day 13.5
(more )
Specimen
2J:
(close )
Genetic Background:
|
C57
|
Age:
|
embryonic day 13.5
|
Age Note:
|
Age normalized so that noon of plug day = E0.5.
|
Sex:
|
Not Specified
|
Type:
|
optical section
|
Fixation:
|
4% Paraformaldehyde
|
Embedding:
|
Gelatin
|
Structure |
Level |
Pattern |
Image |
Note |
TS21: diencephalon |
Present |
Regionally restricted |
2J
|
Expression is adjacent to the stalk labeling the profiles that extend from the third ventricle to the pial surface of the brain.
|
Specimen
3A:
embryonic day 14.5
(more )
Specimen
3A:
(close )
Genetic Background:
|
C57
|
Age:
|
embryonic day 14.5
|
Age Note:
|
Age normalized so that noon of plug day = E0.5.
|
Sex:
|
Not Specified
|
Type:
|
optical section
|
Fixation:
|
4% Paraformaldehyde
|
Embedding:
|
Gelatin
|
Structure |
Level |
Pattern |
Image |
Note |
TS22: diencephalon |
Present |
Regionally restricted |
3A
|
Expression is in a strip of strongly labeled area, cut transversely in horizontal sections. In the optic pathway expression was weak in the stalk and the tract and the staining in the chiasm was reduced substantially in regions flanking both sides of the midline.
|
Specimen
3B:
embryonic day 14.5
(more )
Specimen
3B:
(close )
Genetic Background:
|
C57
|
Age:
|
embryonic day 14.5
|
Age Note:
|
Age normalized so that noon of plug day = E0.5.
|
Sex:
|
Not Specified
|
Type:
|
optical section
|
Fixation:
|
4% Paraformaldehyde
|
Embedding:
|
Gelatin
|
Structure |
Level |
Pattern |
Image |
Note |
TS22: diencephalon |
Present |
Regionally restricted |
3B
|
Expression is in a strip of strongly labeled area, cut transversely in horizontal sections.
|
Specimen
3C:
embryonic day 14.5
(more )
Specimen
3C:
(close )
Genetic Background:
|
C57
|
Age:
|
embryonic day 14.5
|
Age Note:
|
Age normalized so that noon of plug day = E0.5.
|
Sex:
|
Not Specified
|
Type:
|
optical section
|
Fixation:
|
4% Paraformaldehyde
|
Embedding:
|
Gelatin
|
Structure |
Level |
Pattern |
Image |
Note |
TS22: diencephalon |
Present |
Regionally restricted |
3C
|
In the optic pathway expression was weak in the stalk and the tract and the staining in the chiasm was reduced substantially in regions flanking both sides of the midline. Expression is in regions caudal to the chiasm, in a configuration mimicking the chiasmatic neurons.
|
Specimen
5A:
embryonic day 14.5
(more )
Specimen
5A:
(close )
Genetic Background:
|
C57
|
Age:
|
embryonic day 14.5
|
Age Note:
|
Age normalized so that noon of plug day = E0.5.
|
Sex:
|
Not Specified
|
Type:
|
optical section
|
Fixation:
|
4% Paraformaldehyde
|
Embedding:
|
Gelatin
|
Structure |
Level |
Pattern |
Image |
Note |
TS22: diencephalon |
Present |
Regionally restricted |
5A
|
Expression is in the lateral regions of the ventral diencephalon, marking some radial glial like profiles that extend from the third ventricle.
|
TS22: optic stalk |
Weak |
|
5A
|
|
Specimen
5B:
embryonic day 14.5
(more )
Specimen
5B:
(close )
Genetic Background:
|
C57
|
Age:
|
embryonic day 14.5
|
Age Note:
|
Age normalized so that noon of plug day = E0.5.
|
Sex:
|
Not Specified
|
Type:
|
optical section
|
Fixation:
|
4% Paraformaldehyde
|
Embedding:
|
Gelatin
|
Structure |
Level |
Pattern |
Image |
Note |
TS22: diencephalon |
Present |
Regionally restricted |
5B
|
In this section cut across the mid-chiasm, expression was observed in the lateral regions and at the midline of the chiasm and the paramidline regions were weakly stained.
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Specimen
5C:
embryonic day 14.5
(more )
Specimen
5C:
(close )
Genetic Background:
|
C57
|
Age:
|
embryonic day 14.5
|
Age Note:
|
Age normalized so that noon of plug day = E0.5.
|
Sex:
|
Not Specified
|
Type:
|
optical section
|
Fixation:
|
4% Paraformaldehyde
|
Embedding:
|
Gelatin
|
Structure |
Level |
Pattern |
Image |
Note |
TS22: optic tract |
Present |
Regionally restricted |
5C
|
Expression is in the deep but not the subpial regions of the tract.
|
Specimen
6A:
embryonic day 15.5
(more )
Specimen
6A:
(close )
Genetic Background:
|
C57
|
Age:
|
embryonic day 15.5
|
Age Note:
|
Age normalized so that noon of plug day = E0.5.
|
Sex:
|
Not Specified
|
Type:
|
optical section
|
Fixation:
|
4% Paraformaldehyde
|
Embedding:
|
Gelatin
|
Structure |
Level |
Pattern |
Image |
Note |
TS23: diencephalon |
Strong |
Regionally restricted |
6A
|
Expression is at the lateral region of the mid-chiasm. Expression was reduced in the medial regions of the chiasm, except the midline, where an expression-rich raphe was observed extending from the chiasmatic neurons in the caudal regions of the diencephalon.
|
TS23: optic stalk |
Moderate |
|
6A
|
|
TS23: optic tract |
Moderate |
|
6A
|
|
Specimen
6B:
embryonic day 15.5
(more )
Specimen
6B:
(close )
Genetic Background:
|
C57
|
Age:
|
embryonic day 15.5
|
Age Note:
|
Age normalized so that noon of plug day = E0.5.
|
Sex:
|
Not Specified
|
Type:
|
optical section
|
Fixation:
|
4% Paraformaldehyde
|
Embedding:
|
Gelatin
|
Structure |
Level |
Pattern |
Image |
Note |
TS23: diencephalon |
Strong |
Regionally restricted |
6B
|
Expression is at the lateral region of the mid-chiasm. Expression was reduced in the medial regions of the chiasm, except the midline, where an expression-rich raphe was observed extending from the chiasmatic neurons in the caudal regions of the diencephalon.
|
TS23: optic stalk |
Moderate |
|
6B
|
|
TS23: optic tract |
Moderate |
|
6B
|
|
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