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Gene Expression Data
Assay Details
Assay
Reference: J:99267 Vanhalst K, et al., delta-Protocadherins: a gene family expressed differentially in the mouse brain. Cell Mol Life Sci. 2005 Jun;62(11):1247-59
Assay type: RNA in situ
MGI Accession ID: MGI:7411317
Gene symbol: Pcdh9
Gene name: protocadherin 9
Probe: Pcdh9 probe1
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Assay notes: Tissues were fixed and post-fixed in 4% formaldehyde.
Results
Specimen 4B: embryonic day 15.0 (more )
Structure Level Pattern Image Note
TS23: neural retina Present Regionally restricted 4B Expression is in the inner ganglion cell layer.
Specimen 4F: postnatal day 1 (more )
Structure Level Pattern Image Note
TS27: entorhinal cortex Present Regionally restricted 4F
TS27: hippocampus Present Regionally restricted 4F
TS27: insular cortex Present Regionally restricted 4F
TS27: occipital cortex Present Regionally restricted 4F
TS27: parietal cortex Present Regionally restricted 4F
TS27: piriform cortex Present Regionally restricted 4F
TS27: retrosplenial cortex Present Regionally restricted 4F
TS27: caudate-putamen Present Regionally restricted 4F Expression is in the matrix of different striatal regions.
TS27: olfactory tubercle Present Patchy 4F
Specimen 4N: postnatal day 1 (more )
Structure Level Pattern Image Note
TS27: caudate-putamen Present Regionally restricted 4N
TS27: entorhinal cortex Present Regionally restricted 4N
TS27: hippocampus Present Regionally restricted 4N
TS27: insular cortex Present Regionally restricted 4N
TS27: occipital cortex Present Regionally restricted 4N
TS27: parietal cortex Present Regionally restricted 4N
TS27: piriform cortex Present Regionally restricted 4N
TS27: retrosplenial cortex Present Regionally restricted 4N
TS27: diencephalon Present Regionally restricted 4N Expression is in brain nuclei.
TS27: midbrain Present Regionally restricted 4N Expression is in brain nuclei.
TS27: amygdala Present Patchy 4N
Specimen not shown E15: embryonic day 15.0 (more )
Structure Level Pattern Image Note
TS23: accessory olfactory bulb anlage Present Regionally restricted
TS23: main olfactory bulb Present Regionally restricted
TS23: vomeronasal organ Present Regionally restricted
Specimen not shown P1: postnatal day 1 (more )
Structure Level Pattern Image Note
TS27: hindbrain Present Regionally restricted Expression is in brain nuclei.
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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04/16/2024
MGI 6.23 		The Jackson Laboratory