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Gene Expression Data
Assay Details
Assay
Reference: J:326160 Hintermann A, et al., Developmental and evolutionary comparative analysis of a regulatory landscape in mouse and chicken. Development. 2022 Jun 15;149(12):dev200594
Assay type: RNA in situ
MGI Accession ID: MGI:7310417
Gene symbol: Hoxd1
Gene name: homeobox D1
Probe: Hoxd1 probe4
Probe preparation: labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Results
Specimen 1B Hoxd1: embryonic day 12.5 (more )
Structure Level Pattern Image Note
TS20: vibrissa placode Strong Regionally restricted 1B Hoxd1 Strong expression in dermal papillae of vibrissa placodes.
Specimen 1F Hoxd1: embryonic day 9.5 (more )
Structure Level Pattern Image Note
TS15: tail Present 1F Hoxd1 Expression in embryonic tailbud.
TS15: unsegmented mesenchyme Weak Regionally restricted 1F Hoxd1 Expression rapidly disappeared from presomitic mesoderm.
TS15: mesenchyme derived from lateral plate Absent 1F Hoxd1 Expression undetected in lateral mesoderm progenitors or in neural tube.
TS15: neural tube Absent 1F Hoxd1 Expression undetected in lateral mesoderm progenitors or in neural tube.
Specimen S1C E12.2 Hoxd1: embryonic day 12.2 (more )
Structure Level Pattern Image Note
TS20: vibrissa placode Strong Regionally restricted S1C E12.2 Hoxd1 Strong expression in dermal papillae of vibrissa placodes.
Specimen S1C E12.5 Hoxd1: embryonic day 12.5 (more )
Structure Level Pattern Image Note
TS20: vibrissa placode Strong Regionally restricted S1C E12.5 Hoxd1 Strong expression in dermal papillae of vibrissa placodes.
Specimen S1C E12.8 Hoxd1: embryonic day 12.8 (more )
Structure Level Pattern Image Note
TS20: vibrissa placode Strong Regionally restricted S1C E12.8 Hoxd1 Strong expression in dermal papillae of vibrissa placodes.
Specimen S1D (right): embryonic day 13.5 (more )
Structure Level Pattern Image Note
TS21: vibrissa dermal component Present Regionally restricted S1D (right) Expression in dermal mesenchyme of vibrissa placode. Expression at decreasing intensities
TS21: vibrissa epidermal component Absent S1D (right) No expression in ectoderm-derived region of follicle.
Specimen S1E Hoxd1 (left): embryonic day 12.5 (more )
Structure Level Pattern Image Note
TS20: vibrissa placode Strong Regionally restricted S1E Hoxd1 (left) Strong expression in dermal papillae of vibrissa placodes.
Specimen S1E Hoxd1 (right): embryonic day 12.5 (more )
Structure Level Pattern Image Note
TS20: vibrissa placode Strong Regionally restricted S1E Hoxd1 (right) Strong expression in dermal papillae of vibrissa placodes.
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/30/2025
MGI 6.24 		The Jackson Laboratory