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Gene Expression Data
Assay Details
Assay
Reference: J:37600 Puschel AW, et al., The sensory innervation of the mouse spinal cord may be patterned by differential expression of and differential responsiveness to semaphorins. Mol Cell Neurosci. 1996 May;7(5):419-31
Assay type: RNA in situ
MGI Accession ID: MGI:6504032
Gene symbol: Sema3a
Gene name: sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3A
Probe: semD probe1
Probe preparation: labelled with S35 RNA
Visualized with: Autoradiography
Results
Specimen E10.5 not shown: embryonic day 10.5 (more )
Structure Level Pattern Image Note
TS17: future spinal cord Absent No expression in thoracic spinal cord at this stage.

Specimen 1E: embryonic day 11.5 (more )
Structure Level Pattern Image Note
TS19: neural tube marginal layer Present Regionally restricted 1E Expression in ventral half of thoracic spinal cord in both marginal and ventricular zones.
TS19: neural tube ventricular layer Present Regionally restricted 1E Expression in ventral half of thoracic spinal cord in both marginal and ventricular zones.
TS19: vertebral pre-cartilage condensation Present Regionally restricted 1E Authors report differential expression in prevertebrae.

Specimen 2D: embryonic day 12.5 (more )
Structure Level Pattern Image Note
TS20: spinal cord thoracic region Strong Regionally restricted 2D Highly expressed in ventrolateral half of spinal cord.
TS20: spinal cord ventricular layer Strong Regionally restricted 2D Highly expressed in band of cells in ventricular zone.
TS20: spinal cord ventral horn Very strong 2D Highest level of expression in ventral horn.

Specimen 4D: embryonic day 15.5 (more )
Structure Level Pattern Image Note
TS23: spinal cord thoracic region Present Regionally restricted 4D Expression in ventral half of spinal cord.

Specimen E12.5 not shown: embryonic day 12.5 (more )
Structure Level Pattern Image Note
TS20: telencephalon Strong Regionally restricted Strong expression in neuroepithelium of telencephalic vesicle.

Specimen 6D: embryonic day 15.5 (more )
Structure Level Pattern Image Note
TS23: brain Present Regionally restricted 6D Authors report expression in discrete regions in distinct groups of cells.
TS23: telencephalon ventricular layer Absent 6D Expression no longer detectable in telencephalic ventricular zone.

Specimen E15.5 not shown: embryonic day 15.5 (more )
Structure Level Pattern Image Note
TS23: brain Present Regionally restricted Authors report expression in distinct cell clusters in striatum, pallidum, thalamus and tegmentum.


Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/18/2025
MGI 6.24
The Jackson Laboratory