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Gene Expression Data
Assay Details
Assay
Reference: J:33995 Gulisano M, et al., Emx1 and Emx2 show different patterns of expression during proliferation and differentiation of the developing cerebral cortex in the mouse. Eur J Neurosci. 1996 May;8(5):1037-50
Assay type: RNA in situ
MGI Accession ID: MGI:6503888
Gene symbol: Emx1
Gene name: empty spiracles homeobox 1
Probe: Emx1 cDNA
Probe preparation: Antisense labelled with S35 RNA
Visualized with: Autoradiography
Results
Specimen 2C: embryonic day 12.5 (more )
Structure Level Pattern Image Note
TS20: cerebral cortex ventricular layer Present 2C
TS20: cerebral cortex intermediate zone Present 2C Expression in transitional field, comprising subventricular zone and intermediate zone, and cortical plate.
TS20: cerebral cortex subventricular zone Present 2C Expression in transitional field, comprising subventricular zone and intermediate zone, and cortical plate.
TS20: cortical plate Present 2C Expression in transitional field, comprising subventricular zone and intermediate zone, and cortical plate.
TS20: cerebral cortex Present Regionally restricted 2C Expression in migrating postmitotic neurons.

Specimen 2F: embryonic day 14.0 (more )
Structure Level Pattern Image Note
TS22: cerebral cortex ventricular layer Present 2F
TS22: cerebral cortex intermediate zone Present 2F Expression in transitional field, comprising subventricular zone and intermediate zone, and cortical plate.
TS22: cerebral cortex subventricular zone Present 2F Expression in transitional field, comprising subventricular zone and intermediate zone, and cortical plate.
TS22: cortical plate Present 2F Expression in transitional field, comprising subventricular zone and intermediate zone, and cortical plate.

Specimen 2I: embryonic day 16.5 (more )
Structure Level Pattern Image Note
TS24: cerebral cortex ventricular layer Present 2I
TS24: cerebral cortex intermediate zone Present 2I Expression in transitional field, comprising subventricular zone and intermediate zone, and cortical plate.
TS24: cerebral cortex subventricular zone Present 2I Expression in transitional field, comprising subventricular zone and intermediate zone, and cortical plate.
TS24: cortical plate Present 2I Expression in transitional field, comprising subventricular zone and intermediate zone, and cortical plate.

Specimen 3A: embryonic day 16.0 (more )
Structure Level Pattern Image Note
TS24: cerebral cortex Present Widespread 3A Expression in practically all cortical zones.
TS24: basal ganglia Absent 3A Anteroventral boundary of expression coinciding with boundary between cortex and basal ganglia.
TS24: diencephalon Absent 3A No expression detectable outside of telencephalic cortex.
TS24: hindbrain Absent 3A No expression detectable outside of telencephalic cortex.
TS24: midbrain Absent 3A No expression detectable outside of telencephalic cortex.

Specimen 3B: embryonic day 18.0 (more )
Structure Level Pattern Image Note
TS26: cerebral cortex Present Widespread 3B Expression in practically all cortical zones.

Specimen 4A: postnatal day 0 (more )
Structure Level Pattern Image Note
TS27: cortical subplate Present Regionally restricted 4A Expression in specific neuronal populations of subplate.
TS27: neocortex layer Present Widespread 4A Expression in practically all layers of cortical plate during postnatal development.
TS27: cortical layer I Absent 4A Expression excluded from layer 1.

Specimen 4B: postnatal day 4 (more )
Structure Level Pattern Image Note
TS28: cortical subplate Present Regionally restricted 4B Expression in specific neuronal populations of subplate.
TS28: neocortex layer Present Widespread 4B Expression in practically all layers of cortical plate during postnatal development.
TS28: cortical layer I Absent 4B Expression excluded from layer 1.

Specimen 5A: postnatal day 2 (more )
Structure Level Pattern Image Note
TS27: cerebral cortex Present Regionally restricted 5A Authors report transient heavy reduction of expression in anterior-most regions of cortex.

Specimen 5B: postnatal day 2 (more )
Structure Level Pattern Image Note
TS27: cerebral cortex Present Regionally restricted 5B Stronger expression in more posterior regions. Anteroposterior boundary between strong and weaker expression.
TS27: main olfactory bulb glomerular layer Present 5B Expression in cells fated to give rise to mitral cell layer and glomerular layer of olfactory bulb.
TS27: main olfactory bulb mitral cell layer Present 5B Expression in cells fated to give rise to mitral cell layer and glomerular layer of olfactory bulb.

Specimen 5C: postnatal day 4 (more )
Structure Level Pattern Image Note
TS28: cerebral cortex Present Regionally restricted 5C Authors report transient heavy reduction of expression in anterior-most regions of cortex.

Specimen 5D: postnatal day 4 (more )
Structure Level Pattern Image Note
TS28: cerebral cortex Present Regionally restricted 5D Stronger expression in more posterior regions. Anteroposterior boundary between strong and weaker expression.
TS28: dentate gyrus Present 5D
TS28: main olfactory bulb glomerular layer Present 5D Expression in cells fated to give rise to mitral cell layer and glomerular layer of olfactory bulb.
TS28: main olfactory bulb mitral cell layer Present 5D Expression in cells fated to give rise to mitral cell layer and glomerular layer of olfactory bulb.

Specimen 5E: postnatal day 9 (more )
Structure Level Pattern Image Note
TS28: cerebral cortex Present Regionally restricted 5E Authors report transient heavy reduction of expression in anterior-most regions of cortex.
TS28: hippocampus Present 5E

Specimen 5F: postnatal day 9 (more )
Structure Level Pattern Image Note
TS28: cerebral cortex Present Regionally restricted 5F Stronger expression in more posterior regions.
TS28: hippocampus Present 5F
TS28: main olfactory bulb glomerular layer Present 5F

Specimen 5G: postnatal adult (more )
Structure Level Pattern Image Note
TS28: cerebral cortex Present Regionally restricted 5G Anterioposterior differences not evident in adult.

Specimen 5H: postnatal adult (more )
Structure Level Pattern Image Note
TS28: cerebral cortex Present Regionally restricted 5H Anterioposterior differences not evident in adult.
TS28: hippocampus Present 5H
TS28: main olfactory bulb glomerular layer Present 5H

Specimen 6A: postnatal day 2 (more )
Structure Level Pattern Image Note
TS27: cingulate cortex Weak 6A Weaker expression in medial regions corresponding to cingulate cortex.

Specimen 6B: postnatal day 2 (more )
Structure Level Pattern Image Note
TS27: neocortex Strong 6B Boundary between strong and weaker expression, coinciding with boundary between neocortex and limbic cortex.
TS27: cerebral cortex Strong Regionally restricted 6B Strong expression in amygdaloid cortex.

Specimen 6C: postnatal day 9 (more )
Structure Level Pattern Image Note
TS28: cingulate cortex Weak 6C Weaker expression in medial regions corresponding to cingulate cortex.

Specimen 6D: postnatal day 9 (more )
Structure Level Pattern Image Note
TS28: cerebral cortex Strong Regionally restricted 6D Strong expression in amygdaloid cortex.

Specimen 6E: postnatal adult (more )
Structure Level Pattern Image Note
TS28: dentate gyrus granule cell layer Present 6E

Specimen 7A: embryonic day 16.0 (more )
Structure Level Pattern Image Note
TS24: cerebral cortex Present Widespread 7A Expression in practically every differentiating cell in cerebral cortex, to the exclusion of layer 2.
TS24: cortical subplate Present Regionally restricted 7A Expression in part of subplate.

Specimen 7C: embryonic day 18.0 (more )
Structure Level Pattern Image Note
TS26: cerebral cortex Present Widespread 7C Expression in practically every differentiating cell in cerebral cortex, to the exclusion of layer 2.
TS26: cortical subplate Present Regionally restricted 7C Expression in part of subplate.

Specimen 7E: postnatal day 4 (more )
Structure Level Pattern Image Note
TS28: cerebral cortex Present Widespread 7E Expression in practically every differentiating cell in cerebral cortex, to the exclusion of layer 2.
TS28: cortical layer II Absent 7E
TS28: cortical subplate Present 7E Expression in part of subplate.

Specimen 8A: postnatal day 9 (more )
Structure Level Pattern Image Note
TS28: cerebral cortex Present Regionally restricted 8A
TS28: cortical layer V Weak 8A Expression consistenty weaker in layer 5.

Specimen 8B: postnatal day 9 (more )
Structure Level Pattern Image Note
TS28: cortical layer III Present 8B No difference in intensity of expression throughout layers.

Specimen 8C: postnatal day 9 (more )
Structure Level Pattern Image Note
TS28: cortical layer III Present 8C No difference in intensity of expression throughout layers.
TS28: cortical layer IV Present 8C No difference in intensity of expression throughout layers.

Specimen 8D: postnatal day 9 (more )
Structure Level Pattern Image Note
TS28: cortical layer V Weak Regionally restricted 8D Expression consistenty weaker in layer 5. Some neuronal nuclei or no expression.

Specimen 8E: postnatal day 9 (more )
Structure Level Pattern Image Note
TS28: cortical layer VI Present 8E No difference in intensity of expression throughout layers.

Specimen 8F: postnatal day 9 (more )
Structure Level Pattern Image Note
TS28: cortical subplate Present Regionally restricted 8F Expression in some neurons of subplate.


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Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/25/2025
MGI 6.24
The Jackson Laboratory