Gene Expression Data
Assay Details
Assay
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Reference:
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J:33995
Gulisano M, et al., Emx1 and Emx2 show different patterns of expression during proliferation and differentiation of the developing cerebral cortex in the mouse. Eur J Neurosci. 1996 May;8(5):1037-50
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Assay type:
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RNA in situ
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MGI Accession ID:
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MGI:6503888
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Gene symbol:
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Emx1
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Gene name:
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empty spiracles homeobox 1
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Probe:
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Emx1 cDNA
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Probe preparation:
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Antisense labelled with S35 RNA
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Visualized with:
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Autoradiography
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Results
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Specimen
2C:
embryonic day 12.5
(more )
Specimen
2C:
(close )
Genetic Background:
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CD-1
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Age:
|
embryonic day 12.5
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Sex:
|
Not Specified
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Type:
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section
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Fixation:
|
4% Paraformaldehyde
|
Embedding:
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Paraffin
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Specimen
2F:
embryonic day 14.0
(more )
Specimen
2F:
(close )
Genetic Background:
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CD-1
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Age:
|
embryonic day 14.0
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Sex:
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Not Specified
|
Type:
|
section
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Fixation:
|
4% Paraformaldehyde
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Embedding:
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Paraffin
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Specimen
2I:
embryonic day 16.5
(more )
Specimen
2I:
(close )
Genetic Background:
|
CD-1
|
Age:
|
embryonic day 16.5
|
Sex:
|
Not Specified
|
Type:
|
section
|
Fixation:
|
4% Paraformaldehyde
|
Embedding:
|
Cryosection
|
Specimen
3A:
embryonic day 16.0
(more )
Specimen
3A:
(close )
Genetic Background:
|
CD-1
|
Age:
|
embryonic day 16.0
|
Sex:
|
Not Specified
|
Type:
|
section
|
Fixation:
|
4% Paraformaldehyde
|
Embedding:
|
Cryosection
|
Structure |
Level |
Pattern |
Image |
Note |
TS24: cerebral cortex |
Present |
Widespread |
3A
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Expression in practically all cortical zones.
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TS24: basal ganglia |
Absent |
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3A
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Anteroventral boundary of expression coinciding with boundary between cortex and basal ganglia.
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TS24: diencephalon |
Absent |
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3A
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No expression detectable outside of telencephalic cortex.
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TS24: hindbrain |
Absent |
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3A
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No expression detectable outside of telencephalic cortex.
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TS24: midbrain |
Absent |
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3A
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No expression detectable outside of telencephalic cortex.
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Specimen
3B:
embryonic day 18.0
(more )
Specimen
3B:
(close )
Genetic Background:
|
CD-1
|
Age:
|
embryonic day 18.0
|
Sex:
|
Not Specified
|
Type:
|
section
|
Fixation:
|
4% Paraformaldehyde
|
Embedding:
|
Cryosection
|
Structure |
Level |
Pattern |
Image |
Note |
TS26: cerebral cortex |
Present |
Widespread |
3B
|
Expression in practically all cortical zones.
|
Specimen
4A:
postnatal day 0
(more )
Specimen
4A:
(close )
Genetic Background:
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CD-1
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Age:
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postnatal day 0
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Sex:
|
Not Specified
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Type:
|
section
|
Fixation:
|
4% Paraformaldehyde
|
Embedding:
|
Cryosection
|
Structure |
Level |
Pattern |
Image |
Note |
TS27: cortical subplate |
Present |
Regionally restricted |
4A
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Expression in specific neuronal populations of subplate.
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TS27: neocortex layer |
Present |
Widespread |
4A
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Expression in practically all layers of cortical plate during postnatal development.
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TS27: cortical layer I |
Absent |
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4A
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Expression excluded from layer 1.
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Specimen
4B:
postnatal day 4
(more )
Specimen
4B:
(close )
Genetic Background:
|
CD-1
|
Age:
|
postnatal day 4
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Sex:
|
Not Specified
|
Type:
|
section
|
Fixation:
|
4% Paraformaldehyde
|
Embedding:
|
Cryosection
|
Structure |
Level |
Pattern |
Image |
Note |
TS28: cortical subplate |
Present |
Regionally restricted |
4B
|
Expression in specific neuronal populations of subplate.
|
TS28: neocortex layer |
Present |
Widespread |
4B
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Expression in practically all layers of cortical plate during postnatal development.
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TS28: cortical layer I |
Absent |
|
4B
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Expression excluded from layer 1.
|
Specimen
5A:
postnatal day 2
(more )
Specimen
5A:
(close )
Genetic Background:
|
CD-1
|
Age:
|
postnatal day 2
|
Sex:
|
Not Specified
|
Type:
|
section
|
Fixation:
|
4% Paraformaldehyde
|
Embedding:
|
Cryosection
|
Structure |
Level |
Pattern |
Image |
Note |
TS27: cerebral cortex |
Present |
Regionally restricted |
5A
|
Authors report transient heavy reduction of expression in anterior-most regions of cortex.
|
Specimen
5B:
postnatal day 2
(more )
Specimen
5B:
(close )
Genetic Background:
|
CD-1
|
Age:
|
postnatal day 2
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Sex:
|
Not Specified
|
Type:
|
section
|
Fixation:
|
4% Paraformaldehyde
|
Embedding:
|
Cryosection
|
Specimen
5C:
postnatal day 4
(more )
Specimen
5C:
(close )
Genetic Background:
|
CD-1
|
Age:
|
postnatal day 4
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Sex:
|
Not Specified
|
Type:
|
section
|
Fixation:
|
4% Paraformaldehyde
|
Embedding:
|
Cryosection
|
Structure |
Level |
Pattern |
Image |
Note |
TS28: cerebral cortex |
Present |
Regionally restricted |
5C
|
Authors report transient heavy reduction of expression in anterior-most regions of cortex.
|
Specimen
5D:
postnatal day 4
(more )
Specimen
5D:
(close )
Genetic Background:
|
CD-1
|
Age:
|
postnatal day 4
|
Sex:
|
Not Specified
|
Type:
|
section
|
Fixation:
|
4% Paraformaldehyde
|
Embedding:
|
Cryosection
|
Specimen
5E:
postnatal day 9
(more )
Specimen
5E:
(close )
Genetic Background:
|
CD-1
|
Age:
|
postnatal day 9
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Sex:
|
Not Specified
|
Type:
|
section
|
Fixation:
|
4% Paraformaldehyde
|
Embedding:
|
Cryosection
|
Structure |
Level |
Pattern |
Image |
Note |
TS28: cerebral cortex |
Present |
Regionally restricted |
5E
|
Authors report transient heavy reduction of expression in anterior-most regions of cortex.
|
TS28: hippocampus |
Present |
|
5E
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Specimen
5F:
postnatal day 9
(more )
Specimen
5F:
(close )
Genetic Background:
|
CD-1
|
Age:
|
postnatal day 9
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Sex:
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Not Specified
|
Type:
|
section
|
Fixation:
|
4% Paraformaldehyde
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Embedding:
|
Cryosection
|
Specimen
5G:
postnatal adult
(more )
Specimen
5G:
(close )
Genetic Background:
|
CD-1
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Age:
|
postnatal adult
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Sex:
|
Not Specified
|
Type:
|
section
|
Fixation:
|
4% Paraformaldehyde
|
Embedding:
|
Cryosection
|
Structure |
Level |
Pattern |
Image |
Note |
TS28: cerebral cortex |
Present |
Regionally restricted |
5G
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Anterioposterior differences not evident in adult.
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Specimen
5H:
postnatal adult
(more )
Specimen
5H:
(close )
Genetic Background:
|
CD-1
|
Age:
|
postnatal adult
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Sex:
|
Not Specified
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Type:
|
section
|
Fixation:
|
4% Paraformaldehyde
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Embedding:
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Cryosection
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Specimen
6A:
postnatal day 2
(more )
Specimen
6A:
(close )
Genetic Background:
|
CD-1
|
Age:
|
postnatal day 2
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Sex:
|
Not Specified
|
Type:
|
section
|
Fixation:
|
4% Paraformaldehyde
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Embedding:
|
Cryosection
|
Structure |
Level |
Pattern |
Image |
Note |
TS27: cingulate cortex |
Weak |
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6A
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Weaker expression in medial regions corresponding to cingulate cortex.
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Specimen
6B:
postnatal day 2
(more )
Specimen
6B:
(close )
Genetic Background:
|
CD-1
|
Age:
|
postnatal day 2
|
Sex:
|
Not Specified
|
Type:
|
section
|
Fixation:
|
4% Paraformaldehyde
|
Embedding:
|
Cryosection
|
Structure |
Level |
Pattern |
Image |
Note |
TS27: neocortex |
Strong |
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6B
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Boundary between strong and weaker expression, coinciding with boundary between neocortex and limbic cortex.
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TS27: cerebral cortex |
Strong |
Regionally restricted |
6B
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Strong expression in amygdaloid cortex.
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Specimen
6C:
postnatal day 9
(more )
Specimen
6C:
(close )
Genetic Background:
|
CD-1
|
Age:
|
postnatal day 9
|
Sex:
|
Not Specified
|
Type:
|
section
|
Fixation:
|
4% Paraformaldehyde
|
Embedding:
|
Cryosection
|
Structure |
Level |
Pattern |
Image |
Note |
TS28: cingulate cortex |
Weak |
|
6C
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Weaker expression in medial regions corresponding to cingulate cortex.
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Specimen
6D:
postnatal day 9
(more )
Specimen
6D:
(close )
Genetic Background:
|
CD-1
|
Age:
|
postnatal day 9
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Sex:
|
Not Specified
|
Type:
|
section
|
Fixation:
|
4% Paraformaldehyde
|
Embedding:
|
Cryosection
|
Structure |
Level |
Pattern |
Image |
Note |
TS28: cerebral cortex |
Strong |
Regionally restricted |
6D
|
Strong expression in amygdaloid cortex.
|
Specimen
6E:
postnatal adult
(more )
Specimen
6E:
(close )
Genetic Background:
|
CD-1
|
Age:
|
postnatal adult
|
Sex:
|
Not Specified
|
Type:
|
section
|
Fixation:
|
4% Paraformaldehyde
|
Embedding:
|
Cryosection
|
Specimen
7A:
embryonic day 16.0
(more )
Specimen
7A:
(close )
Genetic Background:
|
CD-1
|
Age:
|
embryonic day 16.0
|
Sex:
|
Not Specified
|
Type:
|
section
|
Fixation:
|
4% Paraformaldehyde
|
Embedding:
|
Cryosection
|
Structure |
Level |
Pattern |
Image |
Note |
TS24: cerebral cortex |
Present |
Widespread |
7A
|
Expression in practically every differentiating cell in cerebral cortex, to the exclusion of layer 2.
|
TS24: cortical subplate |
Present |
Regionally restricted |
7A
|
Expression in part of subplate.
|
Specimen
7C:
embryonic day 18.0
(more )
Specimen
7C:
(close )
Genetic Background:
|
CD-1
|
Age:
|
embryonic day 18.0
|
Sex:
|
Not Specified
|
Type:
|
section
|
Fixation:
|
4% Paraformaldehyde
|
Embedding:
|
Cryosection
|
Structure |
Level |
Pattern |
Image |
Note |
TS26: cerebral cortex |
Present |
Widespread |
7C
|
Expression in practically every differentiating cell in cerebral cortex, to the exclusion of layer 2.
|
TS26: cortical subplate |
Present |
Regionally restricted |
7C
|
Expression in part of subplate.
|
Specimen
7E:
postnatal day 4
(more )
Specimen
7E:
(close )
Genetic Background:
|
CD-1
|
Age:
|
postnatal day 4
|
Sex:
|
Not Specified
|
Type:
|
section
|
Fixation:
|
4% Paraformaldehyde
|
Embedding:
|
Cryosection
|
Specimen
8A:
postnatal day 9
(more )
Specimen
8A:
(close )
Genetic Background:
|
CD-1
|
Age:
|
postnatal day 9
|
Sex:
|
Not Specified
|
Type:
|
section
|
Fixation:
|
4% Paraformaldehyde
|
Embedding:
|
Cryosection
|
Specimen
8B:
postnatal day 9
(more )
Specimen
8B:
(close )
Genetic Background:
|
CD-1
|
Age:
|
postnatal day 9
|
Sex:
|
Not Specified
|
Type:
|
section
|
Fixation:
|
4% Paraformaldehyde
|
Embedding:
|
Cryosection
|
Structure |
Level |
Pattern |
Image |
Note |
TS28: cortical layer III |
Present |
|
8B
|
No difference in intensity of expression throughout layers.
|
Specimen
8C:
postnatal day 9
(more )
Specimen
8C:
(close )
Genetic Background:
|
CD-1
|
Age:
|
postnatal day 9
|
Sex:
|
Not Specified
|
Type:
|
section
|
Fixation:
|
4% Paraformaldehyde
|
Embedding:
|
Cryosection
|
Specimen
8D:
postnatal day 9
(more )
Specimen
8D:
(close )
Genetic Background:
|
CD-1
|
Age:
|
postnatal day 9
|
Sex:
|
Not Specified
|
Type:
|
section
|
Fixation:
|
4% Paraformaldehyde
|
Embedding:
|
Cryosection
|
Structure |
Level |
Pattern |
Image |
Note |
TS28: cortical layer V |
Weak |
Regionally restricted |
8D
|
Expression consistenty weaker in layer 5. Some neuronal nuclei or no expression.
|
Specimen
8E:
postnatal day 9
(more )
Specimen
8E:
(close )
Genetic Background:
|
CD-1
|
Age:
|
postnatal day 9
|
Sex:
|
Not Specified
|
Type:
|
section
|
Fixation:
|
4% Paraformaldehyde
|
Embedding:
|
Cryosection
|
Structure |
Level |
Pattern |
Image |
Note |
TS28: cortical layer VI |
Present |
|
8E
|
No difference in intensity of expression throughout layers.
|
Specimen
8F:
postnatal day 9
(more )
Specimen
8F:
(close )
Genetic Background:
|
CD-1
|
Age:
|
postnatal day 9
|
Sex:
|
Not Specified
|
Type:
|
section
|
Fixation:
|
4% Paraformaldehyde
|
Embedding:
|
Cryosection
|
Structure |
Level |
Pattern |
Image |
Note |
TS28: cortical subplate |
Present |
Regionally restricted |
8F
|
Expression in some neurons of subplate.
|
|