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Gene Expression Data
Assay Details
Assay
Reference: J:31897 Fan CM, et al., Expression patterns of two murine homologs of Drosophila single-minded suggest possible roles in embryonic patterning and in the pathogenesis of Down syndrome. Mol Cell Neurosci. 1996 Jan;7(1):1-16
Assay type: RNA in situ
MGI Accession ID: MGI:6471823
Gene symbol: Sim1
Gene name: single-minded family bHLH transcription factor 1
Probe: Sim1 cDNA6
Probe preparation: Antisense labelled with S35 RNA
Visualized with: Autoradiography
Results
Specimen 4C: embryonic day 9.5 (more )
Structure Level Pattern Image Note
TS15: diencephalon Present Regionally restricted 4C Expressed in the basal portion of the caudal diencephalon.
TS15: future midbrain Present 4C
TS15: head mesenchyme Present Regionally restricted 4C Expressed in the mesenchyme underlying the neural tube in the cephalic flexure.
TS15: dermomyotome Strong 4C

Specimen 4E: embryonic day 9.5 (more )
Structure Level Pattern Image Note
TS15: diencephalon Present Regionally restricted 4E Expressed in the mammillary area in the basal half but excluded from the midline.
TS15: head mesenchyme Present Regionally restricted 4E Expressed in the mesenchyme underlying the neural tube in the cephalic flexure.

Specimen 5A: embryonic day 10.5 (more )
Structure Level Pattern Image Note
TS17: diencephalon mantle layer Present 5A
TS17: diencephalon ventricular layer Present 5A
TS17: midbrain mantle layer Present 5A
TS17: midbrain ventricular layer Present 5A
TS17: diencephalon Present Regionally restricted 5A Expressed in the hypothalamic domain. Dorsal extended expression at the zona limitans.
TS17: head mesenchyme Present Regionally restricted 5A Expressed in a restricted region.
TS17: telencephalon Present Regionally restricted 5A Expressed in the alar plate.

Specimen 5C/G: embryonic day 10.5 (more )
Structure Level Pattern Image Note
TS17: diencephalon Present Regionally restricted 5G , 5C Dorsal extended expression at the zona limitans in a V-shaped group of cells that spaned the region between the ridge and the furrow.

Specimen 5I: embryonic day 10.5 (more )
Structure Level Pattern Image Note
TS17: diencephalon mantle layer Present 5I
TS17: diencephalon ventricular layer Present 5I
TS17: midbrain mantle layer Present 5I
TS17: midbrain ventricular layer Present 5I

Specimen 5K: embryonic day 10.5 (more )
Structure Level Pattern Image Note
TS17: diencephalon Present Regionally restricted 5K Expressed in the hypothalamic domain.
TS17: diencephalon mantle layer Present 5K
TS17: diencephalon ventricular layer Present 5K
TS17: midbrain mantle layer Present 5K
TS17: midbrain ventricular layer Present 5K
TS17: telencephalon Present Regionally restricted 5K Expressed in the alar plate.

Specimen 5M: embryonic day 10.5 (more )
Structure Level Pattern Image Note
TS17: head mesenchyme Present Regionally restricted 5M Expressed in a restricted region.
TS17: diencephalon Present Regionally restricted 5M Expressed in the hypothalamic domain.
TS17: diencephalon mantle layer Present 5M
TS17: diencephalon ventricular layer Present 5M
TS17: midbrain mantle layer Present 5M
TS17: midbrain ventricular layer Present 5M

Specimen 8A: embryonic day 9.5 (more )
Structure Level Pattern Image Note
TS15: unsegmented mesenchyme Present Uniform 8A
TS15: nephric duct Strong 8A

Specimen 8B: embryonic day 9.5 (more )
Structure Level Pattern Image Note
TS15: somite Present Regionally restricted 8B Expression gradually excluded from the ventromedial half of the somite.

Specimen 8C: embryonic day 9.5 (more )
Structure Level Pattern Image Note
TS15: dermomyotome Present 8C
TS15: sclerotome Absent 8C
TS15: nephric duct Strong 8C

Specimen 8G: embryonic day 10.5 (more )
Structure Level Pattern Image Note
TS17: body region Present Regionally restricted 8G Expressed in the girdle.
TS17: future spinal cord Present Regionally restricted 8G Expressed in two bands of cells flanking the floor plate.
TS17: forelimb bud Weak Regionally restricted 8G Expressed in the dorsal aspect.

Specimen not shown: embryonic day 9.0 (more )
Structure Level Pattern Image Note
TS14: future diencephalon Present Regionally restricted Expressed in the caudal diencephalon.

Specimen not shown: embryonic day 10.0 (more )
Structure Level Pattern Image Note
TS16: neural tube lateral wall Present Regionally restricted Expressed in bilateral stripes flanking the floor plate.

Specimen not shown: embryonic day 10.5 (more )
Structure Level Pattern Image Note
TS17: midbrain-hindbrain junction Present Regionally restricted Expressed in the mantle.
TS17: midbrain Present Regionally restricted Expressed in largely a longitudinal basal plate zone.

Specimen not shown: embryonic day 12.5 (more )
Structure Level Pattern Image Note
TS20: dermis Present
TS20: diencephalon mantle layer Present
TS20: diencephalon ventricular layer Present
TS20: early nephron Present
TS20: hypothalamus Present
TS20: mammillary area Present
TS20: midbrain mantle layer Present
TS20: midbrain ventricular layer Present
TS20: telencephalon Present

Specimen not shown: embryonic day 16.5 (more )
Note: Summarized in Table 1.
Structure Level Pattern Image Note
TS24: mammillary area Present Regionally restricted Expressed in the lateral mammillary nuclei.
TS24: amygdala Present
TS24: anterior hypothalamic nucleus Present
TS24: genital tubercle Present
TS24: head mesenchyme Present
TS24: maturing glomerular tuft Present
TS24: renal tubule Present
TS24: zona limitans intrathalamica Present
TS24: basal forebrain Present Regionally restricted Expressed in the basal plate domains of p1, p2.
TS24: midbrain Present Regionally restricted Expressed in the basal plate.
TS24: spinal cord lateral wall Present Regionally restricted Expressed in cells next to the floor plate.
TS24: dermis Present Regionally restricted Expressed in the face, chest and back.


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Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
04/23/2024
MGI 6.23
The Jackson Laboratory