Gene Expression Data
Assay Details
Assay
|
Reference:
|
J:224807
Lee HY, et al., Reciprocal actions of ATF5 and Shh in proliferation of cerebellar granule neuron progenitor cells. Dev Neurobiol. 2012 Jun;72(6):789-804
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Assay type:
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Immunohistochemistry
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MGI Accession ID:
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MGI:6416341
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Gene symbol:
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Atf5
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Gene name:
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activating transcription factor 5
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Antibody:
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anti-ATF5
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Detection system:
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Biotinylated secondary antibody/[Strept]avidin coupled to Alexa Fluor 568
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Results
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Specimen
1a:
embryonic day 14.5
(more )
Specimen
1a:
(close )
Genetic Background:
|
Not Specified
|
Age:
|
embryonic day 14.5
|
Sex:
|
Not Specified
|
Type:
|
section
|
Fixation:
|
4% Paraformaldehyde
|
Embedding:
|
Cryosection
|
Structure |
Level |
Pattern |
Image |
Note |
TS22: cerebellum ventricular layer |
Present |
|
1a
,
1aa
|
The regions of expression correlates with cell proliferation (Mki67+).
|
TS22: rhombic lip |
Present |
|
1a
,
1aa
|
The regions of expression correlates with cell proliferation (Mki67+).
|
TS22: cerebellum gray matter |
Present |
Regionally restricted |
1aa
,
1a
|
Expressed in a subset of cells in the nascent external granule layer. The regions of expression correlates with cell proliferation (Mki67+).
|
Specimen
1B:
embryonic day 14.5
(more )
Specimen
1B:
(close )
Genetic Background:
|
Not Specified
|
Age:
|
embryonic day 14.5
|
Sex:
|
Not Specified
|
Type:
|
section
|
Fixation:
|
4% Paraformaldehyde
|
Embedding:
|
Cryosection
|
Structure |
Level |
Pattern |
Image |
Note |
TS22: cerebellum gray matter |
Present |
Regionally restricted |
1B
|
Expressed in a few cells in the nascent external granule layer. Expression was less intense than compared to its expression at later embryonic stages.
|
Specimen
1C:
embryonic day 14.5
(more )
Specimen
1C:
(close )
Genetic Background:
|
Not Specified
|
Age:
|
embryonic day 14.5
|
Sex:
|
Not Specified
|
Type:
|
section
|
Fixation:
|
4% Paraformaldehyde
|
Embedding:
|
Cryosection
|
Structure |
Level |
Pattern |
Image |
Note |
TS22: cerebellum ventricular layer |
Present |
|
1C
|
Expressed in the nuclei, higher than its expression in the external granule layer.
|
TS22: rhombic lip |
Present |
|
1C
|
Expressed in the nuclei, higher than its expression in the external granule layer.
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Specimen
1E:
embryonic day 16.5
(more )
Specimen
1E:
(close )
Genetic Background:
|
Not Specified
|
Age:
|
embryonic day 16.5
|
Sex:
|
Not Specified
|
Type:
|
section
|
Fixation:
|
4% Paraformaldehyde
|
Embedding:
|
Cryosection
|
Structure |
Level |
Pattern |
Image |
Note |
TS24: cerebellum external granule cell layer |
Present |
|
1e
,
1E
|
More intense and extensive compared to E14.5. Expressed in majority of cells and highest in cells nearest to the rhombic lip. The regions of expression correlates with cell proliferation (Mki67+).
|
TS24: rhombic lip |
Present |
|
1E
,
1e
|
The regions of expression correlates with cell proliferation (Mki67+).
|
Specimen
1F:
embryonic day 16.5
(more )
Specimen
1F:
(close )
Genetic Background:
|
Not Specified
|
Age:
|
embryonic day 16.5
|
Sex:
|
Not Specified
|
Type:
|
section
|
Fixation:
|
4% Paraformaldehyde
|
Embedding:
|
Cryosection
|
Specimen
2A:
postnatal day 1
(more )
Specimen
2A:
(close )
Genetic Background:
|
Not Specified
|
Age:
|
postnatal day 1
|
Sex:
|
Not Specified
|
Type:
|
section
|
Fixation:
|
4% Paraformaldehyde
|
Embedding:
|
Cryosection
|
Structure |
Level |
Pattern |
Image |
Note |
TS27: cerebellum external granule cell layer |
Present |
Widespread |
2A
|
Expressed in all lobes. The regions of expression correlates with cell proliferation (Mki67+).
|
TS27: cerebellar cortex |
Present |
Regionally restricted |
2A
|
Widely present in all regions of the external granule cell layer, but relatively little expression in the cerebellum outside of the external granule cell layer.
|
Specimen
2C/E/F/H:
postnatal day 6
(more )
Note: Double labeled: green - Atf5; red - Mki67 (assay MGI:6416344).
Specimen
2C/E/F/H:
(close )
Genetic Background:
|
Not Specified
|
Age:
|
postnatal day 6
|
Sex:
|
Not Specified
|
Type:
|
section
|
Fixation:
|
4% Paraformaldehyde
|
Embedding:
|
Cryosection
|
Note:
|
Double labeled: green - Atf5; red - Mki67 (assay MGI:6416344).
|
Structure |
Level |
Pattern |
Image |
Note |
TS28: cerebellum external granule cell layer |
Strong |
|
2F
,
2H
,
2C
,
2E
|
Nuclear expression in the majority of the cells. Majority positive cells were also Mki67+.
|
TS28: cerebellar cortex |
Strong |
Regionally restricted |
2E
,
2C
|
Strong expression in the external granule cell layer, and in widely dispersed cells outside of the external granule cell layer.
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Specimen
3A/C/D/F:
postnatal day 9
(more )
Note: Double labeled: green - Atf5; red - Mki67 (assay MGI:6416344).
Specimen
3A/C/D/F:
(close )
Genetic Background:
|
Not Specified
|
Age:
|
postnatal day 9
|
Sex:
|
Not Specified
|
Type:
|
section
|
Fixation:
|
4% Paraformaldehyde
|
Embedding:
|
Cryosection
|
Note:
|
Double labeled: green - Atf5; red - Mki67 (assay MGI:6416344).
|
Structure |
Level |
Pattern |
Image |
Note |
TS28: cerebellum external granule cell layer |
Present |
Regionally restricted |
3A
,
3C
,
3D
,
3F
|
Specifically in the outer external granule layer, where the proliferating cerebellar granule neuron progenitor cells are found.
|
TS28: cerebellar cortex |
Present |
Regionally restricted |
3A
,
3C
|
Expression in the external granule layer is lower than at P6 and very few proliferating cells are found outside of external granule layer.
|
Specimen
3H:
postnatal day 15
(more )
Specimen
3H:
(close )
Genetic Background:
|
Not Specified
|
Age:
|
postnatal day 15
|
Sex:
|
Not Specified
|
Type:
|
section
|
Fixation:
|
4% Paraformaldehyde
|
Embedding:
|
Cryosection
|
Structure |
Level |
Pattern |
Image |
Note |
TS28: cerebellum external granule cell layer |
Present |
|
3H
|
Decreased expression and only in a relatively few proliferating cells. Little or no expression outside of the external granule cell layer.
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Specimen
S1A/C:
postnatal day 6
(more )
Note: Double labeled: green - Atf5; red - Tubb3 (assay MGI:6416346).
Specimen
S1A/C:
(close )
Genetic Background:
|
Not Specified
|
Age:
|
postnatal day 6
|
Sex:
|
Not Specified
|
Type:
|
section
|
Fixation:
|
4% Paraformaldehyde
|
Embedding:
|
Cryosection
|
Note:
|
Double labeled: green - Atf5; red - Tubb3 (assay MGI:6416346).
|
Specimen
S1D/F:
postnatal day 7
(more )
Note: Double labeled: green - Atf5; red - Rbfox3 (assay MGI:6416348).
Specimen
S1D/F:
(close )
Genetic Background:
|
Not Specified
|
Age:
|
postnatal day 7
|
Sex:
|
Not Specified
|
Type:
|
section
|
Fixation:
|
4% Paraformaldehyde
|
Embedding:
|
Cryosection
|
Note:
|
Double labeled: green - Atf5; red - Rbfox3 (assay MGI:6416348).
|
Specimen
not shown:
embryonic day 17.5
(more )
Specimen
not shown:
(close )
Genetic Background:
|
Not Specified
|
Age:
|
embryonic day 17.5
|
Sex:
|
Not Specified
|
Type:
|
section
|
Fixation:
|
4% Paraformaldehyde
|
Embedding:
|
Cryosection
|
Structure |
Level |
Pattern |
Image |
Note |
TS25: cerebellum external granule cell layer |
Present |
|
|
Expressed in majority of cells and highest in cells nearest to the rhombic lip, similar as in E16.5. The regions of expression correlates with cell proliferation (Mki67+).
|
TS25: rhombic lip |
Present |
|
|
The regions of expression correlates with cell proliferation (Mki67+).
|
Specimen
not shown:
postnatal adult
(more )
Specimen
not shown:
(close )
Genetic Background:
|
Not Specified
|
Age:
|
postnatal adult
|
Sex:
|
Not Specified
|
Type:
|
section
|
Fixation:
|
4% Paraformaldehyde
|
Embedding:
|
Cryosection
|
|