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Gene Expression Data
Assay Details
Assay
Reference: J:192287 Klymiuk I, et al., In vivo functional requirement of the mouse Ifitm1 gene for germ cell development, interferon mediated immune response and somitogenesis. PLoS One. 2012;7(10):e44609
Assay type: In situ reporter (knock in)
MGI Accession ID: MGI:6393591
Gene symbol: Ifitm1
Gene name: interferon induced transmembrane protein 1
Reporter: lacZ
Direct Detection
Results
Specimen 2A: embryonic day 8.5; Ifitm1tm1.1Ieg/Ifitm1+ (more )
Structure Level Pattern Image Note
TS13: future brain Strong Regionally restricted 2A Expressed in the ventral region.
TS13: neural tube Strong 2A
TS13: allantois Weak Single cells 2A

Specimen 2B: embryonic day 8.5; Ifitm1tm1.1Ieg/Ifitm1+ (more )
Structure Level Pattern Image Note
TS13: future brain Strong Regionally restricted 2B Expressed in the ventral region.
TS13: neural tube Strong 2B
TS13: allantois Weak Single cells 2B

Specimen 2C: embryonic day 8.5; Ifitm1tm1.1Ieg/Ifitm1+ (more )
Structure Level Pattern Image Note
TS13: future brain Strong Regionally restricted 2C Expressed in the ventral region.
TS13: neural tube Strong 2C
TS13: allantois Weak Single cells 2C

Specimen 2D: embryonic day 8.5; Ifitm1tm1.1Ieg/Ifitm1+ (more )
Structure Level Pattern Image Note
TS13: future brain Strong Regionally restricted 2D Expressed in the ventral region.

Specimen 2E: embryonic day 8.5; Ifitm1tm1.1Ieg/Ifitm1+ (more )
Structure Level Pattern Image Note
TS13: future brain Strong Regionally restricted 2E Expressed in the ventral region.
TS13: neural tube Strong 2E

Specimen 2F: embryonic day 9.5; Ifitm1tm1.1Ieg/Ifitm1+ (more )
Structure Level Pattern Image Note
TS15: future brain Present Regionally restricted 2F Expressed in the ventral region.
TS15: gut Present 2F The anterior boundary of expression was approximately at the level of the anlage of the developing lung.
TS15: neural tube Present 2F The anterior boundary of expression was approximately at the level of the anlage of the developing lung.
TS15: somite Present 2F The anterior boundary of expression was approximately at the level of the anlage of the developing lung.
TS15: unsegmented mesenchyme Present 2F

Specimen 2G: embryonic day 9.5; Ifitm1tm1.1Ieg/Ifitm1+ (more )
Structure Level Pattern Image Note
TS15: neural tube Present 2G
TS15: somite Present 2G

Specimen 2H: embryonic day 9.5; Ifitm1tm1.1Ieg/Ifitm1+ (more )
Structure Level Pattern Image Note
TS15: future brain Present Regionally restricted 2H Expressed in the ventral region.

Specimen 2I: embryonic day 9.5; Ifitm1tm1.1Ieg/Ifitm1+ (more )
Structure Level Pattern Image Note
TS15: future brain Present Regionally restricted 2I Expressed in the ventral region.

Specimen 2J: embryonic day 10.5; Ifitm1tm1.1Ieg/Ifitm1+ (more )
Structure Level Pattern Image Note
TS17: brain Present Regionally restricted 2J Expressed in the ventral region. Extended further along the anterior-posterior axis as compared to E9.5.
TS17: gut Present 2J Stronger expression as compared to E9.5, with an anterior boundary at the level of the anlage of the lung.
TS17: neural tube Present 2J Stronger expression as compared to E9.5, with an anterior boundary at the level of the anlage of the lung.
TS17: somite Present 2J Stronger expression as compared to E9.5, with an anterior boundary at the level of the anlage of the lung.
TS17: unsegmented mesenchyme Present 2J Stronger expression as compared to E9.5.

Specimen 2K: embryonic day 10.5; Ifitm1tm1.1Ieg/Ifitm1+ (more )
Structure Level Pattern Image Note
TS17: neural tube Present 2K
TS17: somite Present 2K
TS17: unsegmented mesenchyme Present 2K

Specimen 2L: embryonic day 10.5; Ifitm1tm1.1Ieg/Ifitm1+ (more )
Structure Level Pattern Image Note
TS17: brain Present Regionally restricted 2L Expressed in the ventral region. Extended further along the anterior-posterior axis as compared to E9.5.

Specimen 2M: embryonic day 10.5; Ifitm1tm1.1Ieg/Ifitm1+ (more )
Structure Level Pattern Image Note
TS17: brain Present Regionally restricted 2M Expressed in the ventral region.

Specimen 2N: embryonic day 11.5; Ifitm1tm1.1Ieg/Ifitm1+ (more )
Structure Level Pattern Image Note
TS19: gut Present 2N Strongly decreased as compared to the earlier developmental stages.
TS19: neural tube Present 2N Strongly decreased as compared to the earlier developmental stages.
TS19: somite Present 2N Strongly decreased as compared to the earlier developmental stages.
TS19: unsegmented mesenchyme Present 2N Strongly decreased as compared to the earlier developmental stages.
TS19: brain Present Regionally restricted 2N Expressed in the ventral region. Strongly decreased as compared to the earlier developmental stages.
TS19: urogenital ridge Present 2N

Specimen 2O: embryonic day 11.5; Ifitm1tm1.1Ieg/Ifitm1+ (more )
Structure Level Pattern Image Note
TS19: somite Present 2O Strongly decreased as compared to the earlier developmental stages.
TS19: unsegmented mesenchyme Present 2O Strongly decreased as compared to the earlier developmental stages.

Specimen 2P: embryonic day 11.5; Ifitm1tm1.1Ieg/Ifitm1+ (more )
Structure Level Pattern Image Note
TS19: neural tube Present 2P Strongly decreased as compared to the earlier developmental stages.

Specimen 2Q: embryonic day 11.5; Ifitm1tm1.1Ieg/Ifitm1+ (more )
Structure Level Pattern Image Note
TS19: brain Present Regionally restricted 2Q Expressed in the ventral region. Strongly decreased as compared to the earlier developmental stages.

Specimen 3A: embryonic day 12.5; Ifitm1tm1.1Ieg/Ifitm1+ (more )
Structure Level Pattern Image Note
TS20: somite Trace 3A Expression decreased markedly such that it was barely detectable.
TS20: unsegmented mesenchyme Trace 3A Expression decreased markedly such that it was barely detectable.
TS20: spinal cord floor plate Strong 3A The anterior boundary appeared more diffuse than at earlier stages.
TS20: gut Present 3A The anterior boundary appeared more diffuse than at earlier stages.
TS20: urogenital ridge Strong 3A

Specimen 3C: embryonic day 12.5; Ifitm1tm1.1Ieg/Ifitm1+ (more )
Structure Level Pattern Image Note
TS20: urogenital ridge Strong 3C

Specimen 3E: embryonic day 13.5; Ifitm1tm1.1Ieg/Ifitm1+ (more )
Structure Level Pattern Image Note
TS21: intestine Present 3E
TS21: metanephros Present 3E
TS21: olfactory epithelium Present 3E
TS21: spinal cord floor plate Present 3E
TS21: sympathetic ganglion Present 3E
TS21: thymus primordium Present 3E
TS21: tongue papillary placode Present 3E
TS21: tooth Present 3E
TS21: urogenital ridge Present 3E
TS21: oropharynx Present Regionally restricted 3E Expressed in the mucosa.
TS21: brain Present 3E Background staining in wildtype embryos appeared only in the choroid plexus.
TS21: limb Present Regionally restricted 3E Expressed in the inner side.

Specimen 3G: embryonic day 13.5; Ifitm1tm1.1Ieg/Ifitm1+ (more )
Structure Level Pattern Image Note
TS21: spinal cord floor plate Present 3G
TS21: sympathetic ganglion Present 3G
TS21: thymus primordium Present 3G
TS21: urogenital ridge Present 3G

Specimen 3I: embryonic day 14.5; Ifitm1tm1.1Ieg/Ifitm1+ (more )
Note: Background staining in wildtype littermates was found in some area of the brain, the inner ear, and the paramesonephric duct.
Structure Level Pattern Image Note
TS22: brain Present 3I Background staining in wildtype littermates was found in some area of the brain.
TS22: eyelid Present 3I
TS22: hair follicle Present 3I
TS22: intestine Present 3I
TS22: limb Present 3I
TS22: olfactory epithelium Present 3I
TS22: oropharynx Present 3I
TS22: ovary Present 3I
TS22: spinal cord floor plate Present 3I
TS22: sympathetic ganglion Present 3I
TS22: thymus primordium Present 3I
TS22: tongue papillary placode Present 3I
TS22: tooth Present 3I
TS22: metanephros Absent 3I

Specimen 3K: embryonic day 14.5; Ifitm1tm1.1Ieg/Ifitm1+ (more )
Note: Background staining in wildtype littermates was found in some area of the brain, the inner ear, and the paramesonephric duct.
Structure Level Pattern Image Note
TS22: olfactory epithelium Present 3K
TS22: ovary Present 3K

Specimen 4A: embryonic day 12.5; Ifitm1tm1.1Ieg/Ifitm1+ (more )
Structure Level Pattern Image Note
TS20: spinal cord floor plate Strong 4A

Specimen 4B: embryonic day 12.5; Ifitm1tm1.1Ieg/Ifitm1+ (more )
Structure Level Pattern Image Note
TS20: early nephron Strong Regionally restricted 4B Strong expression in the tubuli of the metanephros.
TS20: urogenital ridge Weak Diffuse 4B very faint

Specimen 5A: embryonic day 13.5; Ifitm1tm1.1Ieg/Ifitm1+ (more )
Structure Level Pattern Image Note
TS21: cerebral aqueduct Present Regionally restricted 5A Expressed in the epithelium.

Specimen 5B: embryonic day 13.5; Ifitm1tm1.1Ieg/Ifitm1+ (more )
Structure Level Pattern Image Note
TS21: sympathetic ganglion Strong Non-Uniform 5B The outer strong expression was not distributed evenly in all cells.

Specimen 5B': embryonic day 13.5; Ifitm1tm1.1Ieg/Ifitm1+ (more )
Structure Level Pattern Image Note
TS21: sympathetic ganglion Strong Non-Uniform 5B' The outer strong expression was not distributed evenly in all cells.

Specimen 5C: embryonic day 13.5; Ifitm1tm1.1Ieg/Ifitm1+ (more )
Structure Level Pattern Image Note
TS21: oropharynx Present Regionally restricted 5C Expressed in the epithelium.
TS21: tongue papillary placode Present 5C

Specimen 5D: embryonic day 13.5; Ifitm1tm1.1Ieg/Ifitm1+ (more )
Structure Level Pattern Image Note
TS21: olfactory epithelium Moderate Regionally restricted 5D Expressed at the basal level.

Specimen 5E: embryonic day 13.5; Ifitm1tm1.1Ieg/Ifitm1+ (more )
Structure Level Pattern Image Note
TS21: thymus primordium Present Regionally restricted 5E More prominent expression in the cortex than in the medulla.

Specimen 5F: embryonic day 13.5; Ifitm1tm1.1Ieg/Ifitm1+ (more )
Structure Level Pattern Image Note
TS21: tooth Present 5F Weaker expression compared to the strong staining in the cells of the floor plate.

Specimen 5G: embryonic day 13.5; Ifitm1tm1.1Ieg/Ifitm1+ (more )
Structure Level Pattern Image Note
TS21: spinal cord floor plate Strong 5G

Specimen 5H: embryonic day 13.5; Ifitm1tm1.1Ieg/Ifitm1+ (more )
Structure Level Pattern Image Note
TS21: urogenital ridge Present Regionally restricted 5H Expressed in an inner cell layer.

Specimen 5I: embryonic day 13.5; Ifitm1tm1.1Ieg/Ifitm1+ (more )
Structure Level Pattern Image Note
TS21: metanephros Present Regionally restricted 5I Expressed in the tubuli.

Specimen 6A: embryonic day 14.5; Ifitm1tm1.1Ieg/Ifitm1+ (more )
Structure Level Pattern Image Note
TS22: sympathetic ganglion Present 6A

Specimen 6B: embryonic day 14.5; Ifitm1tm1.1Ieg/Ifitm1+ (more )
Structure Level Pattern Image Note
TS22: eyelid epithelium Present 6B Predominantly located at the basal side.

Specimen 6C: embryonic day 14.5; Ifitm1tm1.1Ieg/Ifitm1+ (more )
Structure Level Pattern Image Note
TS22: oropharynx Present Regionally restricted 6C Expressed in the epithelium.

Specimen 6D: embryonic day 14.5; Ifitm1tm1.1Ieg/Ifitm1+ (more )
Structure Level Pattern Image Note
TS22: olfactory epithelium Present 6D

Specimen 6E: embryonic day 14.5; Ifitm1tm1.1Ieg/Ifitm1+ (more )
Structure Level Pattern Image Note
TS22: tooth Present Widespread 6E More prominent expression and extended throughout the developing teeth primordia.

Specimen 6F: embryonic day 14.5; Ifitm1tm1.1Ieg/Ifitm1+ (more )
Structure Level Pattern Image Note
TS22: thymus primordium Present Regionally restricted 6F More prominent expression in the cortex than in the medulla.

Specimen 6G: embryonic day 14.5; Ifitm1tm1.1Ieg/Ifitm1+ (more )
Structure Level Pattern Image Note
TS22: nasal gland Present Regionally restricted 6G Expressed in the tubuli of serous glands associated with the nasal septum.

Specimen 6H: embryonic day 14.5; Ifitm1tm1.1Ieg/Ifitm1+ (more )
Structure Level Pattern Image Note
TS22: hair follicle Present Single cells 6H Spotted expression within single cells.

Specimen 6I: embryonic day 14.5; Ifitm1tm1.1Ieg/Ifitm1+ (more )
Structure Level Pattern Image Note
TS22: spinal cord floor plate Present 6I

Specimen 6J: embryonic day 14.5; Ifitm1tm1.1Ieg/Ifitm1+ (more )
Structure Level Pattern Image Note
TS22: limb mesenchyme Present Regionally restricted 6J Staining on the inner side of the limbs was located under the dermis in mesenchymal cells.

Specimen 6K: embryonic day 14.5; Ifitm1tm1.1Ieg/Ifitm1+ (more )
Structure Level Pattern Image Note
TS22: intestine epithelium Present Regionally restricted 6K Expressed in single cells in the outer epithelium of the intestinal wall.

Specimen 6K': embryonic day 14.5; Ifitm1tm1.1Ieg/Ifitm1+ (more )
Structure Level Pattern Image Note
TS22: intestine epithelium Present Regionally restricted 6K' Expressed in single cells in the outer epithelium of the intestinal wall.

Specimen 6L: embryonic day 14.5; Ifitm1tm1.1Ieg/Ifitm1+ (more )
Structure Level Pattern Image Note
TS22: ovary Present 6L
TS22: metanephros Absent 6L

Specimen 6M: embryonic day 14.5; Ifitm1tm1.1Ieg/Ifitm1+ (more )
Structure Level Pattern Image Note
TS22: hindgut epithelium Strong Widespread 6M

Specimen 7A: postnatal day 90-120; Ifitm1tm1.1Ieg/Ifitm1+ (more )
Structure Level Pattern Image Note
TS28: lobar bronchus Strong 7A

Specimen 7C: postnatal day 90-120; Ifitm1tm1.1Ieg/Ifitm1+ (more )
Structure Level Pattern Image Note
TS28: lobar bronchus epithelium Strong 7C

Specimen 8A: postnatal day 90-120; Ifitm1tm1.1Ieg/Ifitm1+ (more )
Structure Level Pattern Image Note
TS28: thymus Strong Widespread 8A

Specimen 8C: postnatal day 90-120; Ifitm1tm1.1Ieg/Ifitm1+ (more )
Structure Level Pattern Image Note
TS28: thymus medullary core Present 8C

Specimen S4 left: embryonic day 9.5; Ifitm1tm1.1Ieg/Ifitm1+ (more )
Structure Level Pattern Image Note
TS15: paraxial mesenchyme Present S4_left Expression faithfully reproduced the endogenous expression pattern, although more sensitive.
TS15: future brain Present Regionally restricted S4_left Expressed in the ventral region. Expression faithfully reproduced the endogenous expression pattern, although more sensitive.


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last database update
09/03/2024
MGI 6.24
The Jackson Laboratory