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Gene Expression Data
Assay Details
Assay
Reference: J:111755 Bonnin A, et al., Expression mapping of 5-HT1 serotonin receptor subtypes during fetal and early postnatal mouse forebrain development. Neuroscience. 2006;141(2):781-794
Assay type: RNA in situ
MGI Accession ID: MGI:6392634
Gene symbol: Htr1f
Gene name: 5-hydroxytryptamine (serotonin) receptor 1F
Probe: Htr1f cDNA1
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Results
Specimen 4A: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS22: cortical plate Present Graded 4A Expression is in a medial high to lateral low gradient.

Specimen 4B: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS22: ganglionic eminence Present Regionally restricted 4B Expression is in the proliferative zone of the caudal ganglionic eminence.
TS22: cortical plate Present Graded 4B Expression is in a medial high to lateral low gradient.

Specimen 4C: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS22: ganglionic eminence Present Regionally restricted 4C Expression is in the proliferative zone of the caudal ganglionic eminence.
TS22: cortical plate Present Graded 4C Expression is in a medial high to lateral low gradient.
TS22: dorsal thalamus Present Graded 4C Expression is in a medial high to lateral low gradient.
TS22: amygdala Present 4C
TS22: dorsal lateral geniculate nucleus Absent 4C

Specimen 4D: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS22: ganglionic eminence Present Regionally restricted 4D Expression is in the proliferative zone of the caudal ganglionic eminence.
TS22: cortical plate Present Graded 4D Expression is in a medial high to lateral low gradient.
TS22: dorsal thalamus Present Graded 4D Expression is in a medial high to lateral low gradient.

Specimen 4E: embryonic day 16.5 (more )
Structure Level Pattern Image Note
TS24: caudate-putamen Present 4E
TS24: cortical plate Present 4E

Specimen 4F: embryonic day 16.5 (more )
Structure Level Pattern Image Note
TS24: caudate-putamen Present 4F
TS24: cortical plate Present 4F
TS24: ganglionic eminence Absent 4F

Specimen 4G: embryonic day 16.5 (more )
Structure Level Pattern Image Note
TS24: hippocampus Present Regionally restricted 4G Expression is in the CA3 region.
TS24: dorsal thalamus Present Graded 4G Expression is in a medial high to lateral low gradient.
TS24: ganglionic eminence Absent 4G

Specimen 4H: embryonic day 16.5 (more )
Structure Level Pattern Image Note
TS24: hippocampus Present Regionally restricted 4H Expression is in the CA3 region.
TS24: amygdala Present 4H
TS24: dorsal thalamus Present Graded 4H Expression is in a medial high to lateral low gradient.
TS24: dorsal lateral geniculate nucleus Absent 4H
TS24: ganglionic eminence Absent 4H

Specimen 4I: postnatal day 0 (more )
Structure Level Pattern Image Note
TS27: cortical layer V Strong Regionally restricted 4I Expression is in the rostral part of the cortex.
TS27: cortical layer VI Strong Regionally restricted 4I Expression is in the rostral part of the cortex.

Specimen 4J: postnatal day 0 (more )
Structure Level Pattern Image Note
TS27: cortical layer V Strong Regionally restricted 4J Expression is in the rostral part of the cortex.
TS27: cortical layer VI Strong Regionally restricted 4J Expression is in the rostral part of the cortex.
TS27: ganglionic eminence Absent 4J

Specimen 4K: postnatal day 0 (more )
Structure Level Pattern Image Note
TS27: hippocampus Present 4K
TS27: dorsal lateral geniculate nucleus Absent 4K
TS27: ganglionic eminence Absent 4K

Specimen 4L: postnatal day 0 (more )
Structure Level Pattern Image Note
TS27: amygdala Present 4L
TS27: hippocampus Present 4L
TS27: ganglionic eminence Absent 4L

Specimen 5B: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS22: cerebral cortex ventricular layer Present 5B

Specimen 5D: embryonic day 16.5 (more )
Structure Level Pattern Image Note
TS24: cerebral cortex ventricular layer Present 5D

Specimen 5F: postnatal day 0 (more )
Structure Level Pattern Image Note
TS27: cortical layer V Strong Regionally restricted 5F Expression is in the rostral part of the cortex.
TS27: cortical layer VI Strong Regionally restricted 5F Expression is in the rostral part of the cortex.

Specimen 6D: embryonic day 16.5 (more )
Structure Level Pattern Image Note
TS24: paraventricular thalamic nucleus Strong 6D
TS24: thalamic nucleus Strong Regionally restricted 6D Expression is in the ventromedial thalamic nucleus.
TS24: medial habenular nucleus Trace 6D

Specimen not shown: embryonic day 12.5 (more )
Structure Level Pattern Image Note
TS20: brain Absent

Specimen Table 2 E14.5: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS22: amygdala Present
TS22: caudate-putamen Present
TS22: cerebral cortex subventricular zone Present
TS22: cerebral cortex ventricular layer Present
TS22: cortical plate Present
TS22: ganglionic eminence Present
TS22: globus pallidus Present
TS22: hippocampus Present
TS22: lateral habenular nucleus Present
TS22: lateral preoptic area Present
TS22: medial habenular nucleus Present
TS22: paraventricular thalamic nucleus Present
TS22: piriform cortex Present
TS22: reticular thalamic nucleus Present
TS22: ventral lateral geniculate nucleus Present
TS22: ventral posterior lateral thalamic nucleus Present
TS22: ventral posterior medial thalamic nucleus Present
TS22: zona incerta Present
TS22: thalamic nucleus Present Includes the ventrolateral thalamic nucleus, ventromedial thalamic nucleus, and the posterior complex.
TS22: hypothalamus Present Regionally restricted Expression is in the paraventricular hypothalamic nucleus.
TS22: hypothalamus medial zone Present Regionally restricted Expression is in the medial preoptic area.

Specimen Table 2 E16.5: embryonic day 16.5 (more )
Structure Level Pattern Image Note
TS24: amygdala Present
TS24: caudate-putamen Present
TS24: cerebral cortex subventricular zone Present
TS24: cerebral cortex ventricular layer Present
TS24: cortical plate Present
TS24: globus pallidus Present
TS24: hippocampus Present
TS24: lateral habenular nucleus Present
TS24: lateral preoptic area Present
TS24: medial habenular nucleus Present
TS24: paraventricular hypothalamic nucleus Present
TS24: paraventricular thalamic nucleus Present
TS24: piriform cortex Present
TS24: reticular thalamic nucleus Present
TS24: ventral lateral geniculate nucleus Present
TS24: ventral lateral thalamic nucleus Present
TS24: zona incerta Present
TS24: thalamic nucleus Present Includes the ventromedial thalamic nucleus and the posterior complex.
TS24: preoptic area Present Regionally restricted Expression is in the medial preoptic area.

Specimen Table 2 P0: postnatal day 0 (more )
Structure Level Pattern Image Note
TS27: amygdala Present
TS27: caudate-putamen Present
TS27: cortical layer V Present
TS27: cortical layer VI Present
TS27: cortical plate Present
TS27: globus pallidus Present
TS27: hippocampus Present
TS27: paraventricular thalamic nucleus Present
TS27: piriform cortex Present
TS27: posterior thalamic group Present
TS27: reticular thalamic nucleus Present
TS27: ventral lateral geniculate nucleus Present
TS27: ventral lateral thalamic nucleus Present
TS27: ventral posterior lateral thalamic nucleus Present
TS27: ventral posterior medial thalamic nucleus Present
TS27: zona incerta Present
TS27: thalamic nucleus Present Regionally restricted Expression is in the ventromedial thalamic nucleus.


Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
05/07/2024
MGI 6.23
The Jackson Laboratory