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Gene Expression Data
Assay Details
Assay
Reference: J:111755 Bonnin A, et al., Expression mapping of 5-HT1 serotonin receptor subtypes during fetal and early postnatal mouse forebrain development. Neuroscience. 2006;141(2):781-794
Assay type: RNA in situ
MGI Accession ID: MGI:6392633
Gene symbol: Htr1d
Gene name: 5-hydroxytryptamine (serotonin) receptor 1D
Probe: Htr1d cDNA1
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Results
Specimen 3A: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS22: caudate-putamen Present 3A
TS22: globus pallidus Present 3A
TS22: cortical plate Present Regionally restricted 3A Expression is throughout the antero-posterior and medio-lateral axes.
Specimen 3B: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS22: amygdala Present 3B
TS22: cortical plate Present Regionally restricted 3B Expression is throughout the antero-posterior and medio-lateral axes.
Specimen 3C: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS22: amygdala Present 3C
TS22: medial habenular nucleus Strong 3C
TS22: lateral habenular nucleus Moderate 3C
TS22: cortical plate Present Regionally restricted 3C Expression is throughout the antero-posterior and medio-lateral axes.
Specimen 3D: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS22: amygdala Present 3D
TS22: cortical plate Present Regionally restricted 3D Expression is throughout the antero-posterior and medio-lateral axes.
Specimen 3E: embryonic day 16.5 (more )
Structure Level Pattern Image Note
TS24: caudate-putamen Present 3E
TS24: globus pallidus Present 3E
TS24: cortical plate Weak 3E
Specimen 3F: embryonic day 16.5 (more )
Structure Level Pattern Image Note
TS24: dorsal thalamus Present Graded 3F Expression is low rostrally and high caudally.
TS24: cortical plate Weak 3F
Specimen 3G: embryonic day 16.5 (more )
Structure Level Pattern Image Note
TS24: dorsal thalamus Present Graded 3G Expression is low rostrally and high caudally.
TS24: amygdala Present 3G
TS24: hippocampus Present 3G
TS24: medial habenular nucleus Strong 3G
TS24: lateral habenular nucleus Moderate 3G
TS24: ganglionic eminence Weak Regionally restricted 3G Expression is in the caudal ganglionic eminence.
TS24: cortical plate Weak 3G
Specimen 3H: embryonic day 16.5 (more )
Structure Level Pattern Image Note
TS24: dorsal lateral geniculate nucleus Moderate 3H
TS24: dorsal thalamus Present Graded 3H Expression is low rostrally and high caudally.
TS24: amygdala Present 3H
TS24: hippocampus Present 3H
TS24: cortical plate Weak 3H
Specimen 3I: postnatal day 0 (more )
Structure Level Pattern Image Note
TS27: caudate-putamen Present 3I
TS27: cortical layer V Present 3I
TS27: cortical layer VI Present 3I
TS27: cortical plate Present 3I
TS27: globus pallidus Present 3I
Specimen 3J: postnatal day 0 (more )
Structure Level Pattern Image Note
TS27: amygdala Present 3J
TS27: cortical layer V Present 3J
TS27: cortical layer VI Present 3J
TS27: cortical plate Present 3J
Specimen 3K: postnatal day 0 (more )
Structure Level Pattern Image Note
TS27: amygdala Present 3K
TS27: anterior dorsal thalamic nucleus Present 3K
TS27: cortical layer V Present 3K
TS27: cortical layer VI Present 3K
TS27: cortical plate Present 3K
TS27: nucleus of lateral olfactory tract Present 3K
TS27: nucleus reuniens Present 3K
TS27: paraventricular thalamic nucleus Present 3K
TS27: dorsal thalamus Weak 3K
Specimen 3L: postnatal day 0 (more )
Structure Level Pattern Image Note
TS27: amygdala Present 3L
TS27: anterior dorsal thalamic nucleus Present 3L
TS27: cortical layer V Present 3L
TS27: cortical layer VI Present 3L
TS27: cortical plate Present 3L
TS27: nucleus reuniens Present 3L
TS27: paraventricular thalamic nucleus Present 3L
TS27: dorsal thalamus Weak 3L
TS27: lateral habenular nucleus Weak 3L
TS27: medial habenular nucleus Weak 3L
Specimen 5A: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS22: cortical plate Present Regionally restricted 5A Expression is throughout the antero-posterior and medio-lateral axes.
TS22: cerebral cortex ventricular layer Absent 5A
Specimen 5C: embryonic day 16.5 (more )
Structure Level Pattern Image Note
TS24: cortical plate Weak 5C
TS24: cerebral cortex ventricular layer Present 5C
Specimen 5E: postnatal day 0 (more )
Structure Level Pattern Image Note
TS27: cortical layer V Present 5E
TS27: cortical layer VI Present 5E
TS27: cortical plate Present 5E
Specimen 6C: embryonic day 16.5 (more )
Structure Level Pattern Image Note
TS24: medial habenular nucleus Very strong 6C
TS24: ventral posterior lateral thalamic nucleus Very strong 6C
TS24: thalamic nucleus Very strong Regionally restricted 6C Expression is in the ventrolateral thalamic nucleus.
TS24: lateral habenular nucleus Moderate 6C
Specimen not shown: embryonic day 12.5 (more )
Structure Level Pattern Image Note
TS20: brain Absent
Specimen Table 2 E14.5: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS22: amygdala Present
TS22: caudate-putamen Present
TS22: cortical plate Present
TS22: dorsal lateral geniculate nucleus Present
TS22: globus pallidus Present
TS22: lateral habenular nucleus Present
TS22: lateral preoptic area Present
TS22: medial habenular nucleus Present
TS22: paraventricular thalamic nucleus Present
TS22: piriform cortex Present
TS22: reticular thalamic nucleus Present
TS22: ventral lateral geniculate nucleus Present
TS22: ventral posterior lateral thalamic nucleus Present
TS22: ventral posterior medial thalamic nucleus Present
TS22: zona incerta Present
TS22: thalamic nucleus Present Includes the ventrolateral thalamic nucleus, ventromedial thalamic nucleus, and the posterior complex.
TS22: hypothalamus Present Regionally restricted Expression is in the paraventricular hypothalamic nucleus.
TS22: hypothalamus medial zone Present Regionally restricted Expression is in the medial preoptic area.
Specimen Table 2 E16.5: embryonic day 16.5 (more )
Structure Level Pattern Image Note
TS24: amygdala Present
TS24: caudate-putamen Present
TS24: cerebral cortex subventricular zone Present
TS24: cerebral cortex ventricular layer Present
TS24: cortical plate Present
TS24: dorsal lateral geniculate nucleus Present
TS24: ganglionic eminence Present
TS24: globus pallidus Present
TS24: hippocampus Present
TS24: lateral habenular nucleus Present
TS24: lateral preoptic area Present
TS24: medial habenular nucleus Present
TS24: paraventricular hypothalamic nucleus Present
TS24: paraventricular thalamic nucleus Present
TS24: piriform cortex Present
TS24: reticular thalamic nucleus Present
TS24: ventral lateral geniculate nucleus Present
TS24: ventral lateral thalamic nucleus Present
TS24: ventral posterior lateral thalamic nucleus Present
TS24: ventral posterior medial thalamic nucleus Present
TS24: zona incerta Present
TS24: hippocampal formation Present Regionally restricted Expression is in the dentate gyrus.
TS24: thalamic nucleus Present Regionally restricted Includes the ventromedial thalamic nucleus and the posterior complex.
TS24: hypothalamus medial zone Present Regionally restricted Expression is in the medial preoptic area.
Specimen Table 2 P0: postnatal day 0 (more )
Structure Level Pattern Image Note
TS27: amygdala Present
TS27: caudate-putamen Present
TS27: cortical layer V Present
TS27: cortical layer VI Present
TS27: cortical plate Present
TS27: dentate gyrus Present
TS27: dorsal lateral geniculate nucleus Present
TS27: globus pallidus Present
TS27: hippocampus Present
TS27: lateral habenular nucleus Present
TS27: lateral preoptic area Present
TS27: medial habenular nucleus Present
TS27: medial preoptic area Present
TS27: nucleus of lateral olfactory tract Present
TS27: paraventricular hypothalamic nucleus Present
TS27: paraventricular thalamic nucleus Present
TS27: piriform cortex Present
TS27: posterior thalamic group Present
TS27: reticular thalamic nucleus Present
TS27: ventral lateral geniculate nucleus Present
TS27: ventral lateral thalamic nucleus Present
TS27: ventral posterior lateral thalamic nucleus Present
TS27: ventral posterior medial thalamic nucleus Present
TS27: zona incerta Present
TS27: thalamic nucleus Present Regionally restricted Expression is in the ventromedial thalamic nucleus.
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
04/16/2024
MGI 6.23 		The Jackson Laboratory