Gene Expression Data
Assay Details
Assay
|
Reference:
|
J:184357
Dye CA, et al., A lifespan analysis of intraneocortical connections and gene expression in the mouse I. Cereb Cortex. 2011 Jun;21(6):1311-30
|
Assay type:
|
RNA in situ
|
MGI Accession ID:
|
MGI:6389262
|
Gene symbol:
|
Nr2f1
|
Gene name:
|
nuclear receptor subfamily 2, group F, member 1
|
|
Results
|
Specimen
4A1:
embryonic day 13.5
(more )
Note: Also shown in Supplemental Figure 2A1.
Specimen
4A1:
(close )
Genetic Background:
|
CD-1
|
Age:
|
embryonic day 13.5
|
Sex:
|
Not Specified
|
Type:
|
section
|
Fixation:
|
4% Paraformaldehyde
|
Embedding:
|
Gelatin
|
Note:
|
Also shown in Supplemental Figure 2A1.
|
Structure |
Level |
Pattern |
Image |
Note |
TS21: neocortex |
Present |
Graded |
4A1
|
Rostral to caudal gradient.
|
Specimen
4A2:
embryonic day 13.5
(more )
Note: Also shown in Supplemental Figure 2A2.
Specimen
4A2:
(close )
Genetic Background:
|
CD-1
|
Age:
|
embryonic day 13.5
|
Sex:
|
Not Specified
|
Type:
|
section
|
Fixation:
|
4% Paraformaldehyde
|
Embedding:
|
Gelatin
|
Note:
|
Also shown in Supplemental Figure 2A2.
|
Structure |
Level |
Pattern |
Image |
Note |
TS21: neocortex |
Present |
Graded |
4A2
|
Rostral to caudal gradient.
|
Specimen
4A3:
embryonic day 13.5
(more )
Note: Also shown in Supplemental Figure 2A3.
Specimen
4A3:
(close )
Genetic Background:
|
CD-1
|
Age:
|
embryonic day 13.5
|
Sex:
|
Not Specified
|
Type:
|
section
|
Fixation:
|
4% Paraformaldehyde
|
Embedding:
|
Gelatin
|
Note:
|
Also shown in Supplemental Figure 2A3.
|
Structure |
Level |
Pattern |
Image |
Note |
TS21: neocortex |
Present |
Graded |
4A3
|
Rostral to caudal gradient.
|
Specimen
4A4:
embryonic day 13.5
(more )
Note: Also shown in Supplemental Figure 2A4.
Specimen
4A4:
(close )
Genetic Background:
|
CD-1
|
Age:
|
embryonic day 13.5
|
Sex:
|
Not Specified
|
Type:
|
section
|
Fixation:
|
4% Paraformaldehyde
|
Embedding:
|
Gelatin
|
Note:
|
Also shown in Supplemental Figure 2A4.
|
Structure |
Level |
Pattern |
Image |
Note |
TS21: cortical plate |
Present |
Graded |
4A4
|
Lateral to caudolateral gradient with strongest expression in caudolateral region of cortical plate.
|
Specimen
4A5:
embryonic day 13.5
(more )
Note: Also shown in Supplemental Figure 2A5.
Specimen
4A5:
(close )
Genetic Background:
|
CD-1
|
Age:
|
embryonic day 13.5
|
Sex:
|
Not Specified
|
Type:
|
section
|
Fixation:
|
4% Paraformaldehyde
|
Embedding:
|
Gelatin
|
Note:
|
Also shown in Supplemental Figure 2A5.
|
Structure |
Level |
Pattern |
Image |
Note |
TS21: neocortex |
Present |
Regionally restricted |
4A5
|
Authors report caudo/lateral expression.
|
Specimen
4B1:
embryonic day 14.5
(more )
Note: Also shown in Supplemental Figure 3A1.
Specimen
4B1:
(close )
Genetic Background:
|
CD-1
|
Age:
|
embryonic day 14.5
|
Sex:
|
Not Specified
|
Type:
|
section
|
Fixation:
|
4% Paraformaldehyde
|
Embedding:
|
Gelatin
|
Note:
|
Also shown in Supplemental Figure 3A1.
|
Structure |
Level |
Pattern |
Image |
Note |
TS22: neocortex |
Present |
Graded |
4B1
|
Rostral to caudal gradient.
|
Specimen
4B2:
embryonic day 14.5
(more )
Note: Also shown in Supplemental Figure 3A2.
Specimen
4B2:
(close )
Genetic Background:
|
CD-1
|
Age:
|
embryonic day 14.5
|
Sex:
|
Not Specified
|
Type:
|
section
|
Fixation:
|
4% Paraformaldehyde
|
Embedding:
|
Gelatin
|
Note:
|
Also shown in Supplemental Figure 3A2.
|
Structure |
Level |
Pattern |
Image |
Note |
TS22: neocortex |
Present |
Graded |
4B2
|
Rostral to caudal gradient.
|
Specimen
4B3:
embryonic day 14.5
(more )
Note: Also shown in Supplemental Figure 3A3.
Specimen
4B3:
(close )
Genetic Background:
|
CD-1
|
Age:
|
embryonic day 14.5
|
Sex:
|
Not Specified
|
Type:
|
section
|
Fixation:
|
4% Paraformaldehyde
|
Embedding:
|
Gelatin
|
Note:
|
Also shown in Supplemental Figure 3A3.
|
Structure |
Level |
Pattern |
Image |
Note |
TS22: neocortex |
Present |
Graded |
4B3
|
Rostral to caudal gradient.
|
Specimen
4B4:
embryonic day 14.5
(more )
Note: Also shown in Supplemental Figure 3A4.
Specimen
4B4:
(close )
Genetic Background:
|
CD-1
|
Age:
|
embryonic day 14.5
|
Sex:
|
Not Specified
|
Type:
|
section
|
Fixation:
|
4% Paraformaldehyde
|
Embedding:
|
Gelatin
|
Note:
|
Also shown in Supplemental Figure 3A4.
|
Structure |
Level |
Pattern |
Image |
Note |
TS22: cortical plate |
Present |
Graded |
4B4
|
Lateral to caudolateral gradient with strongest expression in caudolateral region of cortical plate.
|
Specimen
4B5:
embryonic day 14.5
(more )
Note: Also shown in Supplemental Figure 3A5.
Specimen
4B5:
(close )
Genetic Background:
|
CD-1
|
Age:
|
embryonic day 14.5
|
Sex:
|
Not Specified
|
Type:
|
section
|
Fixation:
|
4% Paraformaldehyde
|
Embedding:
|
Gelatin
|
Note:
|
Also shown in Supplemental Figure 3A5.
|
Specimen
4C1:
embryonic day 16.5
(more )
Note: Also shown in Supplemental Figure 4A1.
Specimen
4C1:
(close )
Genetic Background:
|
CD-1
|
Age:
|
embryonic day 16.5
|
Sex:
|
Not Specified
|
Type:
|
section
|
Fixation:
|
4% Paraformaldehyde
|
Embedding:
|
Gelatin
|
Note:
|
Also shown in Supplemental Figure 4A1.
|
Structure |
Level |
Pattern |
Image |
Note |
TS24: neocortex |
Present |
Graded |
4C1
|
Rostral to caudal gradient.
|
Specimen
4C2:
embryonic day 16.5
(more )
Note: Also shown in Supplemental Figure 4A2.
Specimen
4C2:
(close )
Genetic Background:
|
CD-1
|
Age:
|
embryonic day 16.5
|
Sex:
|
Not Specified
|
Type:
|
section
|
Fixation:
|
4% Paraformaldehyde
|
Embedding:
|
Gelatin
|
Note:
|
Also shown in Supplemental Figure 4A2.
|
Structure |
Level |
Pattern |
Image |
Note |
TS24: neocortex |
Present |
Graded |
4C2
|
Rostral to caudal gradient.
|
Specimen
4C3:
embryonic day 16.5
(more )
Note: Also shown in Supplemental Figure 4A3.
Specimen
4C3:
(close )
Genetic Background:
|
CD-1
|
Age:
|
embryonic day 16.5
|
Sex:
|
Not Specified
|
Type:
|
section
|
Fixation:
|
4% Paraformaldehyde
|
Embedding:
|
Gelatin
|
Note:
|
Also shown in Supplemental Figure 4A3.
|
Structure |
Level |
Pattern |
Image |
Note |
TS24: neocortex |
Present |
Graded |
4C3
|
Rostral to caudal gradient.
|
Specimen
4C4:
embryonic day 16.5
(more )
Note: Also shown in Supplemental Figure 4A4.
Specimen
4C4:
(close )
Genetic Background:
|
CD-1
|
Age:
|
embryonic day 16.5
|
Sex:
|
Not Specified
|
Type:
|
section
|
Fixation:
|
4% Paraformaldehyde
|
Embedding:
|
Gelatin
|
Note:
|
Also shown in Supplemental Figure 4A4.
|
Structure |
Level |
Pattern |
Image |
Note |
TS24: neocortex |
Present |
Graded |
4C4
|
Rostrolateral to high caudal gradient.
|
Specimen
4C5:
embryonic day 16.5
(more )
Note: Also shown in Supplemental Figure 4A5.
Specimen
4C5:
(close )
Genetic Background:
|
CD-1
|
Age:
|
embryonic day 16.5
|
Sex:
|
Not Specified
|
Type:
|
section
|
Fixation:
|
4% Paraformaldehyde
|
Embedding:
|
Gelatin
|
Note:
|
Also shown in Supplemental Figure 4A5.
|
Structure |
Level |
Pattern |
Image |
Note |
TS24: neocortex |
Present |
Regionally restricted |
4C5
|
Expression in a caudal region.
|
Specimen
4D1:
embryonic day 18.5
(more )
Note: Also shown in Supplemental Figure 5A1.
Specimen
4D1:
(close )
Genetic Background:
|
CD-1
|
Age:
|
embryonic day 18.5
|
Sex:
|
Not Specified
|
Type:
|
section
|
Fixation:
|
4% Paraformaldehyde
|
Embedding:
|
Gelatin
|
Note:
|
Also shown in Supplemental Figure 5A1.
|
Structure |
Level |
Pattern |
Image |
Note |
TS26: neocortex |
Present |
Graded |
4D1
|
Rostral to caudal gradient.
|
Specimen
4D2:
embryonic day 18.5
(more )
Note: Also shown in Supplemental Figure 5A2.
Specimen
4D2:
(close )
Genetic Background:
|
CD-1
|
Age:
|
embryonic day 18.5
|
Sex:
|
Not Specified
|
Type:
|
section
|
Fixation:
|
4% Paraformaldehyde
|
Embedding:
|
Gelatin
|
Note:
|
Also shown in Supplemental Figure 5A2.
|
Structure |
Level |
Pattern |
Image |
Note |
TS26: neocortex |
Present |
Graded |
4D2
|
Rostral to caudal gradient.
|
Specimen
4D3:
embryonic day 18.5
(more )
Note: Also shown in Supplemental Figure 5A3.
Specimen
4D3:
(close )
Genetic Background:
|
CD-1
|
Age:
|
embryonic day 18.5
|
Sex:
|
Not Specified
|
Type:
|
section
|
Fixation:
|
4% Paraformaldehyde
|
Embedding:
|
Gelatin
|
Note:
|
Also shown in Supplemental Figure 5A3.
|
Structure |
Level |
Pattern |
Image |
Note |
TS26: neocortex |
Present |
Graded |
4D3
|
Rostral to caudal gradient.
|
Specimen
4D4:
embryonic day 18.5
(more )
Note: Also shown in Supplemental Figure 5A4.
Specimen
4D4:
(close )
Genetic Background:
|
CD-1
|
Age:
|
embryonic day 18.5
|
Sex:
|
Not Specified
|
Type:
|
section
|
Fixation:
|
4% Paraformaldehyde
|
Embedding:
|
Gelatin
|
Note:
|
Also shown in Supplemental Figure 5A4.
|
Structure |
Level |
Pattern |
Image |
Note |
TS26: neocortex |
Present |
Regionally restricted |
4D4
|
Expression in a caudal region.
|
Specimen
4D5:
embryonic day 18.5
(more )
Note: Also shown in Supplemental Figure 5A5.
Specimen
4D5:
(close )
Genetic Background:
|
CD-1
|
Age:
|
embryonic day 18.5
|
Sex:
|
Not Specified
|
Type:
|
section
|
Fixation:
|
4% Paraformaldehyde
|
Embedding:
|
Gelatin
|
Note:
|
Also shown in Supplemental Figure 5A5.
|
Structure |
Level |
Pattern |
Image |
Note |
TS26: neocortex |
Present |
Regionally restricted |
4D5
|
Expression in a caudal region.
|
Specimen
4E1:
postnatal day 0
(more )
Note: Also shown in Supplemental Figure 6A1.
Specimen
4E1:
(close )
Genetic Background:
|
CD-1
|
Age:
|
postnatal day 0
|
Sex:
|
Not Specified
|
Type:
|
section
|
Fixation:
|
4% Paraformaldehyde
|
Embedding:
|
Gelatin
|
Note:
|
Also shown in Supplemental Figure 6A1.
|
Structure |
Level |
Pattern |
Image |
Note |
TS27: neocortex |
Present |
Regionally restricted |
4E1
|
Expression in a rostral region.
|
Specimen
4E2:
postnatal day 0
(more )
Note: Also shown in Supplemental Figure 6A2.
Specimen
4E2:
(close )
Genetic Background:
|
CD-1
|
Age:
|
postnatal day 0
|
Sex:
|
Not Specified
|
Type:
|
section
|
Fixation:
|
4% Paraformaldehyde
|
Embedding:
|
Gelatin
|
Note:
|
Also shown in Supplemental Figure 6A2.
|
Structure |
Level |
Pattern |
Image |
Note |
TS27: neocortex |
Present |
Graded |
4E2
|
Expression expands and gradient remains unchanged.
|
Specimen
4E3:
postnatal day 0
(more )
Note: Also shown in Supplemental Figure 6A3.
Specimen
4E3:
(close )
Genetic Background:
|
CD-1
|
Age:
|
postnatal day 0
|
Sex:
|
Not Specified
|
Type:
|
section
|
Fixation:
|
4% Paraformaldehyde
|
Embedding:
|
Gelatin
|
Note:
|
Also shown in Supplemental Figure 6A3.
|
Structure |
Level |
Pattern |
Image |
Note |
TS27: neocortex |
Present |
Graded |
4E3
|
Expression expands and gradient remains unchanged.
|
Specimen
4E4:
postnatal day 0
(more )
Note: Also shown in Supplemental Figure 6A4.
Specimen
4E4:
(close )
Genetic Background:
|
CD-1
|
Age:
|
postnatal day 0
|
Sex:
|
Not Specified
|
Type:
|
section
|
Fixation:
|
4% Paraformaldehyde
|
Embedding:
|
Gelatin
|
Note:
|
Also shown in Supplemental Figure 6A4.
|
Structure |
Level |
Pattern |
Image |
Note |
TS27: neocortex |
Present |
Regionally restricted |
4E4
|
Expression in a caudal region.
|
Specimen
4E5:
postnatal day 0
(more )
Note: Also shown in Supplemental Figure 6A5.
Specimen
4E5:
(close )
Genetic Background:
|
CD-1
|
Age:
|
postnatal day 0
|
Sex:
|
Not Specified
|
Type:
|
section
|
Fixation:
|
4% Paraformaldehyde
|
Embedding:
|
Gelatin
|
Note:
|
Also shown in Supplemental Figure 6A5.
|
Structure |
Level |
Pattern |
Image |
Note |
TS27: neocortex |
Present |
Regionally restricted |
4E5
|
Expression in a rostral region and a caudo-medial region,
|
Specimen
4F1:
postnatal day 3
(more )
Note: Also shown in Supplemental Figure 7A1.
Specimen
4F1:
(close )
Genetic Background:
|
CD-1
|
Age:
|
postnatal day 3
|
Sex:
|
Not Specified
|
Type:
|
section
|
Fixation:
|
4% Paraformaldehyde
|
Embedding:
|
Gelatin
|
Note:
|
Also shown in Supplemental Figure 7A1.
|
Structure |
Level |
Pattern |
Image |
Note |
TS27: neocortex |
Present |
Graded |
4F1
|
Expression gradient maintained; Expression expanded with more complex multilaminar pattern.
|
Specimen
4F2:
postnatal day 3
(more )
Note: Also shown in Supplemental Figure 7A2.
Specimen
4F2:
(close )
Genetic Background:
|
CD-1
|
Age:
|
postnatal day 3
|
Sex:
|
Not Specified
|
Type:
|
section
|
Fixation:
|
4% Paraformaldehyde
|
Embedding:
|
Gelatin
|
Note:
|
Also shown in Supplemental Figure 7A2.
|
Structure |
Level |
Pattern |
Image |
Note |
TS27: neocortex |
Present |
Graded |
4F2
|
Expression gradient maintained; Expression expanded with more complex multilaminar pattern.
|
Specimen
4F3:
postnatal day 3
(more )
Note: Also shown in Supplemental Figure 7A3.
Specimen
4F3:
(close )
Genetic Background:
|
CD-1
|
Age:
|
postnatal day 3
|
Sex:
|
Not Specified
|
Type:
|
section
|
Fixation:
|
4% Paraformaldehyde
|
Embedding:
|
Gelatin
|
Note:
|
Also shown in Supplemental Figure 7A3.
|
Structure |
Level |
Pattern |
Image |
Note |
TS27: neocortex |
Present |
Regionally restricted |
4F3
|
Expression in a caudal region.
|
Specimen
4F4:
postnatal day 3
(more )
Note: Also shown in Supplemental Figure 7A4.
Specimen
4F4:
(close )
Genetic Background:
|
CD-1
|
Age:
|
postnatal day 3
|
Sex:
|
Not Specified
|
Type:
|
section
|
Fixation:
|
4% Paraformaldehyde
|
Embedding:
|
Gelatin
|
Note:
|
Also shown in Supplemental Figure 7A4.
|
Structure |
Level |
Pattern |
Image |
Note |
TS27: neocortex |
Present |
Regionally restricted |
4F4
|
Expression in a caudal region.
|
Specimen
4F5:
postnatal day 3
(more )
Note: Also shown in Supplemental Figure 7A5.
Specimen
4F5:
(close )
Genetic Background:
|
CD-1
|
Age:
|
postnatal day 3
|
Sex:
|
Not Specified
|
Type:
|
section
|
Fixation:
|
4% Paraformaldehyde
|
Embedding:
|
Gelatin
|
Note:
|
Also shown in Supplemental Figure 7A5.
|
Structure |
Level |
Pattern |
Image |
Note |
TS27: neocortex |
Present |
Regionally restricted |
4F5
|
|
|