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Gene Expression Data
Assay Details
Assay
Reference: J:104611 Moore-Scott BA, et al., Differential expression of Sonic hedgehog along the anterior-posterior axis regulates patterning of pharyngeal pouch endoderm and pharyngeal endoderm-derived organs. Dev Biol. 2005 Feb 15;278(2):323-35
Assay type: RNA in situ
MGI Accession ID: MGI:6356726
Gene symbol: Pax1
Gene name: paired box 1
Probe: Pax1 probe3
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Results
Specimen 4E: embryonic day 9.5 (more )
Structure Level Pattern Image Note
TS15: 1st branchial pouch endoderm Present 4E
TS15: 2nd branchial pouch endoderm Present 4E
TS15: 3rd branchial pouch endoderm Present 4E
Specimen 4F: embryonic day 9.5; Shhtm1Chg/Shhtm1Chg (more )
Structure Level Pattern Image Note
TS15: 1st branchial pouch endoderm Present 4F Authors report normal expression in mutant embryos.
TS15: 2nd branchial pouch endoderm Present 4F Authors report normal expression in mutant embryos.
TS15: 3rd branchial pouch endoderm Present 4F Authors report normal expression in mutant embryos.
Specimen 4G: embryonic day 10.5 (more )
Structure Level Pattern Image Note
TS17: 1st branchial pouch endoderm Present 4G Expression in pharyngeal endoderm of first and second pouches.
TS17: 2nd branchial pouch endoderm Present 4G Expression in pharyngeal endoderm of first and second pouches.
TS17: 3rd branchial pouch endoderm Strong 4G Higher level of expression in endoderm of third pouch relative to anterior pouches.
Specimen 4H: embryonic day 10.5; Shhtm1Chg/Shhtm1Chg (more )
Structure Level Pattern Image Note
TS17: 1st branchial pouch endoderm Strong 4H Expression remains high in pharyngeal endoderm of presumptive remnant of first pouch.
TS17: 2nd branchial pouch endoderm Strong 4H Expression remains high in second pouch.
Specimen 8C: embryonic day 11.5 (more )
Structure Level Pattern Image Note
TS19: thymus/parathyroid primordium Present Regionally restricted 8C Expression in pharyngeal region only in the bilateral third pouch-derived primordia of thymus and parathyroid.
TS19: branchial pouch Ambiguous Regionally restricted 8C Expression downregulated in other pouches.
Specimen 8D: embryonic day 11.5; Shhtm1Chg/Shhtm1Chg (more )
Structure Level Pattern Image Note
TS19: thymus/parathyroid primordium Present Regionally restricted 8D Expression in two bilateral structures in pharyngeal region.
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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03/25/2025
MGI 6.24 		The Jackson Laboratory