About   Help   FAQ
Gene Expression Data
Assay Details
Assay
Reference: J:31239 Niederreither K, et al., Coordinate patterns of expression of type I and III collagens during mouse development. Matrix Biol. 1995 Dec;14(9):705-13
Assay type: RNA in situ
MGI Accession ID: MGI:6274513
Gene symbol: Col1a1
Gene name: collagen, type I, alpha 1
Probe: proalpha1(I) cDNA
Probe preparation: Antisense labelled with S35 RNA
Visualized with: Autoradiography
Results
Specimen 1A/B: embryonic day 8.5 (more )
Note: postfixed in 4% formaldehyde
Structure Level Pattern Image Note
TS13: amnion Weak 1A/B
TS13: head mesenchyme Weak Regionally restricted 1A/B Expressed in part of the head mesenchyme.

Specimen 1D/E: embryonic day 10.5 (more )
Note: postfixed in 4% formaldehyde
Structure Level Pattern Image Note
TS17: head mesenchyme Present Regionally restricted 1D/E Expressed in the cranial mesenchyme surrounding the developing brain.
TS17: gut mesenchyme Present Regionally restricted 1D/E Expressed in the mesenchyme surrounding the developing intestine.
TS17: dorsal aorta Present 1D/E
TS17: limb bud Present 1D/E
TS17: nasal mesenchyme Present 1D/E
TS17: pericardium Present 1D/E

Specimen 2A: embryonic day 12.5 (more )
Note: postfixed in 4% formaldehyde
Structure Level Pattern Image Note
TS20: atrioventricular endocardial cushion Present 2A
TS20: dermis Present 2A
TS20: diaphragm Present 2A
TS20: mandibular process Present 2A
TS20: maxillary process Present 2A
TS20: meninges Present 2A
TS20: nasal mesenchyme Present 2A
TS20: tail dermatome Present 2A
TS20: tail sclerotome Present 2A
TS20: thoracic body wall Present 2A
TS20: tongue mesenchyme Present 2A
TS20: intestine Present 2A strongest expression
TS20: umbilical cord Present 2A strongest expression
TS20: body wall mesenchyme Present Regionally restricted 2A Expressed in mesenchymal tissue surrounding the rostral prevertebrae.
TS20: pericardium Present 2A Also expressed in the fibrous connective tissue.

Specimen 3A: embryonic day 14.5 (more )
Note: postfixed in 4% formaldehyde
Structure Level Pattern Image Note
TS22: vibrissa dermal component Present 3A weaker expression

Specimen 3B: embryonic day 14.5 (more )
Note: postfixed in 4% formaldehyde
Structure Level Pattern Image Note
TS22: atrioventricular valve Present 3B
TS22: lung mesenchyme Present 3B
TS22: pericardium Present 3B
TS22: trachea mesenchyme Present 3B
TS22: rib cartilage condensation Present Regionally restricted 3B Expressed in in the periosteum.
TS22: vertebra Present Regionally restricted 3B Expressed in in the periosteum.
TS22: arch of aorta Present 3B aortic trunk

Specimen 3C: embryonic day 14.5 (more )
Note: postfixed in 4% formaldehyde
Structure Level Pattern Image Note
TS22: hindlimb digit mesenchyme Present Regionally restricted 3C Expressed in the perichondrium surrounding the digit cartilage.
TS22: hindlimb digit dermis Present 3C

Specimen 6A/B: embryonic day 12.5 (more )
Note: postfixed in 4% formaldehyde
Structure Level Pattern Image Note
TS20: atrioventricular endocardial cushion Strong 6A/B
TS20: endocardial cushion Strong 6A/B
TS20: pericardium Strong Regionally restricted 6A/B Expressed in the fibrous connective tissue.

Specimen 6D/E: embryonic day 14.5 (more )
Note: postfixed in 4% formaldehyde
Structure Level Pattern Image Note
TS22: mandible Present Regionally restricted 6D/E Expressed in the osteoblasts of the alveolar bone of the mandible. Highest levels in the body of the mandible.
TS22: dermis Present 6D/E
TS22: chondrocranium Present 6D/E Highest expression.

Specimen not shown: embryonic day 7.5 (more )
Note: postfixed in 4% formaldehyde
Structure Level Pattern Image Note
TS11: embryo ectoderm Absent
TS11: embryo endoderm Absent
TS11: embryo mesoderm Absent

Specimen not shown: embryonic day 8.5 (more )
Note: postfixed in 4% formaldehyde
Structure Level Pattern Image Note
TS13: pericardium Weak
TS13: somite Absent

Specimen not shown: embryonic day 9.5 (more )
Note: postfixed in 4% formaldehyde
Structure Level Pattern Image Note
TS15: pericardium Present highest levels of expression
TS15: 1st branchial arch Present
TS15: forelimb bud Present
TS15: head mesenchyme Present

Specimen not shown: embryonic day 10.5 (more )
Note: postfixed in 4% formaldehyde
Structure Level Pattern Image Note
TS17: branchial arch Present
TS17: dermatome Present
TS17: sclerotome Present

Specimen not shown: embryonic day 13.5 (more )
Note: postfixed in 4% formaldehyde
Structure Level Pattern Image Note
TS21: diaphragm Strong
TS21: intestine Strong
TS21: thoracic body wall Strong
TS21: umbilical cord Strong
TS21: craniocervical region muscle Present Regionally restricted
TS21: tongue mesenchyme Present Regionally restricted

Specimen not shown: embryonic day 17.5 (more )
Note: postfixed in 4% formaldehyde
Structure Level Pattern Image Note
TS25: tibia Present Regionally restricted Expressed in the zone of ossification. Expression was absent from proliferating chondrocytes and hypertrophic chondrocytes.


Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
Warranty Disclaimer, Privacy Notice, Licensing, & Copyright
Send questions and comments to User Support.
last database update
03/25/2025
MGI 6.24
The Jackson Laboratory