Gene Expression Data
Assay Details
Assay
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Reference:
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J:106097
Rachidi M, et al., Differential transcription of Barhl1 homeobox gene in restricted functional domains of the central nervous system suggests a role in brain patterning. Int J Dev Neurosci. 2006 Feb;24(1):35-44
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Assay type:
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RNA in situ
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MGI Accession ID:
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MGI:6273657
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Gene symbol:
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Barhl1
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Gene name:
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BarH like homeobox 1
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Probe:
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Barhl1 cDNA2
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Probe preparation:
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Antisense labelled with S35 RNA
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Visualized with:
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Autoradiography
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Results
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Specimen
2A:
embryonic day 8.5-9.0
(more )
Specimen
2A:
(close )
Genetic Background:
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Not Specified
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Age:
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embryonic day 8.5-9.0
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Sex:
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Not Specified
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Type:
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section
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Fixation:
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4% Paraformaldehyde
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Embedding:
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Paraffin
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Specimen
2B:
embryonic day 10.5-11.0
(more )
Specimen
2B:
(close )
Genetic Background:
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Not Specified
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Age:
|
embryonic day 10.5-11.0
|
Sex:
|
Not Specified
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Type:
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section
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Fixation:
|
4% Paraformaldehyde
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Embedding:
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Paraffin
|
Structure |
Level |
Pattern |
Image |
Note |
TS18: diencephalon |
Present |
Regionally restricted |
2B
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Expression was detected in the basal plate of the diencephalon, dorsal and ventral thalamus, and the mammillary area.
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TS18: forebrain-midbrain boundary region |
Present |
Regionally restricted |
2B
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Expression was detected in the alar and caudal region of the pretectum.
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TS18: midbrain |
Present |
Regionally restricted |
2B
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Expression was detected in the alar plate of the mesencephalon.
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TS18: rhombic lip |
Present |
Regionally restricted |
2B
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The anterior and posterior rhombic lip was labeled.
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TS18: telencephalon |
Absent |
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2B
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Specimen
2C:
embryonic day 10.5-11.0
(more )
Specimen
2C:
(close )
Genetic Background:
|
Not Specified
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Age:
|
embryonic day 10.5-11.0
|
Sex:
|
Not Specified
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Type:
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section
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Fixation:
|
4% Paraformaldehyde
|
Embedding:
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Paraffin
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Specimen
2D:
embryonic day 13.5-14.0
(more )
Specimen
2D:
(close )
Genetic Background:
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Not Specified
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Age:
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embryonic day 13.5-14.0
|
Sex:
|
Not Specified
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Type:
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section
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Fixation:
|
4% Paraformaldehyde
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Embedding:
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Paraffin
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Specimen
2E:
embryonic day 13.5-14.0
(more )
Specimen
2E:
(close )
Genetic Background:
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Not Specified
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Age:
|
embryonic day 13.5-14.0
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Sex:
|
Not Specified
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Type:
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section
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Fixation:
|
4% Paraformaldehyde
|
Embedding:
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Paraffin
|
Specimen
3A/B:
embryonic day 10.5-11.0
(more )
Specimen
3A/B:
(close )
Genetic Background:
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Not Specified
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Age:
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embryonic day 10.5-11.0
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Sex:
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Not Specified
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Type:
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section
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Fixation:
|
4% Paraformaldehyde
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Embedding:
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Paraffin
|
Structure |
Level |
Pattern |
Image |
Note |
TS18: midbrain |
Present |
Regionally restricted |
3A/B
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In the mesencephalon, expression was observed in a subtle cell layer of migrating cells in the cortical plate of the alar plate.
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Specimen
3D/E:
embryonic day 10.5-11.0
(more )
Specimen
3D/E:
(close )
Genetic Background:
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Not Specified
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Age:
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embryonic day 10.5-11.0
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Sex:
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Not Specified
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Type:
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section
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Fixation:
|
4% Paraformaldehyde
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Embedding:
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Paraffin
|
Structure |
Level |
Pattern |
Image |
Note |
TS18: diencephalon |
Present |
Regionally restricted |
3D/E
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Expression was detected in the basal plate of the diencephalon, dorsal and ventral thalamus, and the mammillary area.
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Specimen
3G/H:
embryonic day 10.5-11.0
(more )
Specimen
3G/H:
(close )
Genetic Background:
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Not Specified
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Age:
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embryonic day 10.5-11.0
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Sex:
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Not Specified
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Type:
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section
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Fixation:
|
4% Paraformaldehyde
|
Embedding:
|
Paraffin
|
Structure |
Level |
Pattern |
Image |
Note |
TS18: rhombic lip |
Present |
Regionally restricted |
3G/H
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In the anterior rhombic lip, expression was particularly noted in the dorsal part of the alar plate corresponding to the progenitor cells of the external granular cell layer.
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Specimen
4A/B:
embryonic day 13.5-14.0
(more )
Specimen
4A/B:
(close )
Genetic Background:
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Not Specified
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Age:
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embryonic day 13.5-14.0
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Sex:
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Not Specified
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Type:
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section
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Fixation:
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4% Paraformaldehyde
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Embedding:
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Paraffin
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Structure |
Level |
Pattern |
Image |
Note |
TS22: superior colliculus |
Weak |
Regionally restricted |
4A/B
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Expression was detected at a relatively lower level. Signal was localized in the cortical plate.
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Specimen
4C/D:
embryonic day 13.5-14.0
(more )
Specimen
4C/D:
(close )
Genetic Background:
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Not Specified
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Age:
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embryonic day 13.5-14.0
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Sex:
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Not Specified
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Type:
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section
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Fixation:
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4% Paraformaldehyde
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Embedding:
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Paraffin
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Structure |
Level |
Pattern |
Image |
Note |
TS22: mammillary area |
Present |
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4C/D
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TS22: hindbrain |
Present |
Regionally restricted |
4C/D
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Expression was detected in the anterior extramural migratory stream.
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Specimen
4E/F:
embryonic day 13.5-14.0
(more )
Specimen
4E/F:
(close )
Genetic Background:
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Not Specified
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Age:
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embryonic day 13.5-14.0
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Sex:
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Not Specified
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Type:
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section
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Fixation:
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4% Paraformaldehyde
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Embedding:
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Paraffin
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Structure |
Level |
Pattern |
Image |
Note |
TS22: cerebellum layer |
Strong |
Regionally restricted |
4E/F
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High expression was detected in the external granular cell layer.
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TS22: inferior colliculus |
Present |
Regionally restricted |
4E/F
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Expression was detected in the dorsal and anterior part of the inferior colliculus.
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Specimen
5A/B:
embryonic day 10.5-11.0
(more )
Specimen
5A/B:
(close )
Genetic Background:
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Not Specified
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Age:
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embryonic day 10.5-11.0
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Sex:
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Not Specified
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Type:
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section
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Fixation:
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4% Paraformaldehyde
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Embedding:
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Paraffin
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Specimen
5D/E:
embryonic day 13.5-14.0
(more )
Specimen
5D/E:
(close )
Genetic Background:
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Not Specified
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Age:
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embryonic day 13.5-14.0
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Sex:
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Not Specified
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Type:
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section
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Fixation:
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4% Paraformaldehyde
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Embedding:
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Paraffin
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Structure |
Level |
Pattern |
Image |
Note |
TS22: spinal cord mantle layer |
Present |
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5D/E
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Expression was delimited to the boundary of the mantle zone between the alar and the basal plates.
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