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Gene Expression Data
Assay Details
Assay
Reference: J:262484 Inoue YU, et al., Generation of Pax6-IRES-EGFP knock-in mouse via the cloning-free CRISPR/Cas9 system to reliably visualize neurodevelopmental dynamics. Neurosci Res. 2018 Jan 31;
Assay type: In situ reporter (knock in)
MGI Accession ID: MGI:6269401
Gene symbol: Pax6
Gene name: paired box 6
Reporter: GFP
Antibody: anti-GFP (ab13970)
Detection system: Secondary antibody coupled to Alexa Fluor
Results
Specimen 3B WT/IRES-EGFP: postnatal day 2; Pax6em1Yinn/Pax6+ (more )
Note: Double labeled: green - Pax6 reporter; magenta - Pax6 protein (assay MGI:6269407).
Structure Level Pattern Image Note
TS27: retina ganglion cell layer Present 3B +/- EGFP , 3B +/- merge Pax6-positive cells mostly express EGFP at the appropriate intensities, while some of them express weaker/stronger EGFP than the endogenous levels.
TS27: retina inner nuclear layer Present 3B +/- EGFP , 3B +/- merge Pax6-positive cells mostly express EGFP at the appropriate intensities, while some of them express weaker/stronger EGFP than the endogenous levels.

Specimen 3B IRES-EGFP/IRES-EGFP: postnatal day 2; Pax6em1Yinn/Pax6em1Yinn (more )
Note: Double labeled: green - Pax6 reporter; magenta - Pax6 protein (assay MGI:6269407).
Structure Level Pattern Image Note
TS27: retina ganglion cell layer Present 3B -/- EGFP , 3B -/- merge EGFP expressions precisely recapitulated the endogenous expression profiles.
TS27: retina inner nuclear layer Present 3B -/- EGFP , 3B -/- merge EGFP expressions precisely recapitulated the endogenous expression profiles.

Specimen 4B upper: embryonic day 12.5; Pax6em1Yinn/Pax6em1Yinn (more )
Structure Level Pattern Image Note
TS20: cerebral cortex Present Graded 4B upper right EGFP expressions were mediolaterally graded, being most intense in the lateral side, and were totally comparable to the endogenous expression pattern.

Specimen 4B lower: embryonic day 12.5; Pax6em1Yinn/Pax6em1Yinn (more )
Structure Level Pattern Image Note
TS20: cerebral cortex Present Graded 4B lower right EGFP expressions were rostrocaudally graded, being most thick in the rostral side, recapitulating the endogenous expressions.

Specimen S3A/B upper: postnatal day 2; Pax6em1Yinn/Pax6+ (more )
Note: Double labeled: green - Pax6 reporter; magenta - Pax6 protein (assay MGI:6269407).
Structure Level Pattern Image Note
TS27: retina ganglion cell layer Present S3B upper middle , S3A upper , S3B upper right Approximately half of Pax6-positive cells within GCL expressed EGFP at the equivalent intensities, while the others expressed weaker/stronger EGFP than the endogenous Pax6.
TS27: retina inner nuclear layer Present S3B upper middle , S3B upper right , S3A upper More than 70% of Pax6-positive cells expressed EGFP at the appropriate levels.

Specimen S3A/B lower: postnatal day 2; Pax6em1Yinn/Pax6em1Yinn (more )
Note: Double labeled: green - Pax6 reporter; magenta - Pax6 protein (assay MGI:6269407).
Structure Level Pattern Image Note
TS27: retina ganglion cell layer Present S3A lower , S3B lower right , S3B lower middle Nearly all the Pax6-positive cells both in GCL and INL expressed EGFP at the comparable intensities, more accurately recapitulating the endogenous expression profiles.
TS27: retina inner nuclear layer Present S3A lower , S3B lower right , S3B lower middle Nearly all the Pax6-positive cells both in GCL and INL expressed EGFP at the comparable intensities, more accurately recapitulating the endogenous expression profiles.

Specimen S4A: postnatal day 2; Pax6em1Yinn/Pax6em1Yinn (more )
Note: Double labeled: green - Pax6 reporter; magenta - Pax6 protein (assay MGI:6269407).
Structure Level Pattern Image Note
TS27: retina ganglion cell layer Present S4A middle , S4A right Expressed in most cells. Pax6 and EGFP expressed at the similar levels.
TS27: retina inner nuclear layer Present S4A middle , S4A right Expressed in most cells. Pax6 and EGFP expressed at the similar levels.

Specimen S4B: postnatal day 80; Pax6em1Yinn/Pax6em1Yinn (more )
Note: Double labeled: green - Pax6 reporter; magenta - Pax6 protein (assay MGI:6269407).
Structure Level Pattern Image Note
TS28: testis Present S4B middle , S4B right EGFP expressions in testis substantially overlap with the Pax6 expressions.


Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/25/2025
MGI 6.24
The Jackson Laboratory