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Gene Expression Data
Assay Details
Assay
Reference: J:204375 Sheth R, et al., "Self-regulation," a new facet of Hox genes' function. Dev Dyn. 2014 Jan;243(1):182-91
Assay type: RNA in situ
MGI Accession ID: MGI:6241399
Gene symbol: Hoxd9
Gene name: homeobox D9
Probe: Hoxd9 probe1
Probe preparation: Antisense labelled with digoxigenin RNA
Results
Specimen 1C: embryonic day 11.5 (more )
Structure Level Pattern Image Note
TS20: zeugopod Present Regionally restricted 1C Expression in the presumptive zeugopod domain shows an anterior bias.
TS20: limb digit Present 1C
Specimen 1D: embryonic day 11.5; Del(2Hoxd11-Hoxd13)29Ddu/Del(2Hoxd11-Hoxd13)29Ddu (more )
Structure Level Pattern Image Note
TS20: zeugopod Present Regionally restricted 1D Expression in the presumptive zeugopod domain of the mutant shows a posterior bias.
TS20: limb digit Present 1D Expression in the digit-forming region is mostly unaffected by the deletion.
Specimen 1I: embryonic day 12.5 (more )
Structure Level Pattern Image Note
TS20: zeugopod Present 1I Expression is maintained at E12.5.
TS20: limb digit Present 1I
Specimen 1J: embryonic day 12.5; Del(2Hoxd11-Hoxd13)29Ddu/Del(2Hoxd11-Hoxd13)29Ddu (more )
Structure Level Pattern Image Note
TS20: zeugopod Present 1J Expression is maintained at E12.5.
TS20: limb digit Present 1J Expression in the digit-forming region is mostly unaffected by the deletion.
Specimen 2D: embryonic day 11.5 (more )
Structure Level Pattern Image Note
TS20: limb digit Present Non-Uniform 2D Expression in the digit region. Digit 1 showed no expression.
Specimen 2E: embryonic day 11.5; Hoxa13tm1Ipc/Hoxa13tm1Ipc (more )
Structure Level Pattern Image Note
TS20: limb digit Present Non-Uniform 2E Ectopic expression was detected in the presumptive digit 1 region.
Specimen 2F: embryonic day 11.5; Del(2Hoxd11-Hoxd13)29Ddu/+, Hoxa13tm1Ipc/Hoxa13tm1Ipc (more )
Structure Level Pattern Image Note
TS20: limb digit Present Non-Uniform 2F Ectopic expression was detected in the presumptive digit 1 region.
Specimen 2M: embryonic day 12.5 (more )
Structure Level Pattern Image Note
TS20: limb digit Present Non-Uniform 2M Expression in the digit region. Digit 1 showed no expression.
TS20: limb digit 1 Absent 2M
Specimen 2N: embryonic day 12.5; Hoxa13tm1Ipc/Hoxa13tm1Ipc (more )
Structure Level Pattern Image Note
TS20: limb digit Present Non-Uniform 2N Ectopic expression was detected in the presumptive digit 1 region.
TS20: limb digit 1 Present 2N
Specimen 2O: embryonic day 12.5; Del(2Hoxd11-Hoxd13)29Ddu/+, Hoxa13tm1Ipc/Hoxa13tm1Ipc (more )
Structure Level Pattern Image Note
TS20: limb digit Present Non-Uniform 2O Ectopic expression was detected in the presumptive digit 1 region.
TS20: limb digit 1 Present 2O
Specimen 5C: embryonic day 11.5 (more )
Structure Level Pattern Image Note
TS19: forelimb bud Present 5C
Structure Level Pattern Image Note
TS19: forelimb bud Present 5D In the mutant, the separation between the phase one and phase two expression was lost.
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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03/25/2025
MGI 6.24 		The Jackson Laboratory