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Gene Expression Data
Assay Details
Assay
Reference: J:89169 Oldekamp J, et al., Expression pattern of the repulsive guidance molecules RGM A, B and C during mouse development. Gene Expr Patterns. 2004 May;4(3):283-8
Assay type: RNA in situ
MGI Accession ID: MGI:5905650
Gene symbol: Rgmb
Gene name: repulsive guidance molecule family member B
Probe: IMAGE clone 3497841
Probe preparation: Antisense labelled with digoxigenin RNA
Results
Specimen 1A: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS22: telencephalon mantle layer Present 1A
TS22: amygdala Present 1A
TS22: basal forebrain Present 1A
TS22: corpus striatum Present 1A
TS22: hippocampus Present 1A
TS22: neocortex Present 1A
TS22: hindbrain mantle layer Present 1A
TS22: midbrain mantle layer Present 1A
TS22: glossopharyngeal ganglion Strong 1A Strong expression in cranial nerve ganglia.
TS22: trigeminal ganglion Strong 1A Strong expression in cranial nerve ganglia.
TS22: vestibulo-cochlear ganglion Strong 1A Strong expression in cranial nerve ganglia.
TS22: ventricular layer Absent 1A No expression in ventricular zone (neuroepithelium) of central nervous system.
TS22: lung Present 1A
TS22: limb cartilage condensation Present 1A
TS22: sternum Present 1A Expression in cartilage condensations of sternum.
TS22: alimentary system Present 1A

Specimen 1B: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS22: telencephalon mantle layer Present 1B
TS22: cerebral cortex Present Regionally restricted 1B Specific expression throughout the preplate, particularly at inner and outer edges.
TS22: hippocampus Present 1B
TS22: diencephalon mantle layer Present 1B
TS22: prethalamus Strong 1B High levels of expression in ventral thalamus.
TS22: hypothalamus Strong Regionally restricted 1B Expression in caudal portions of hypothalamus.
TS22: dorsal thalamus Ambiguous 1B Authors report dorsal thalamus almost completely devoid of expression.
TS22: midbrain mantle layer Present 1B Expression in large areas of midbrain mantle.
TS22: inferior colliculus Present 1B Expression in tectum in layers.
TS22: hindbrain mantle layer Present 1B
TS22: cerebellum Strong Regionally restricted 1B
TS22: pons Strong Regionally restricted 1B
TS22: hindbrain Present Regionally restricted 1B Expression around 4th ventricle (not ventricular zone).
TS22: brainstem Present Widespread 1B
TS22: spinal cord Present Widespread 1B
TS22: ventricular layer Absent 1B No expression in ventricular zone (neuroepithelium) of central nervous system
TS22: dorsal root ganglion Strong 1B
TS22: limb cartilage condensation Present 1B
TS22: sternum Present 1B
TS22: lung Present 1B
TS22: alimentary system Present 1B Expression in digestive tract.

Specimen 1C: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS22: telencephalon mantle layer Present 1C
TS22: telencephalon septum Present 1C
TS22: cerebral cortex Present Regionally restricted 1C Specific expression throughout the preplate, particularly at inner and outer edges.
TS22: main olfactory bulb Strong Regionally restricted 1C Intense expression through the entire differentiating mantle.
TS22: diencephalon mantle layer Present 1C
TS22: prethalamus Strong 1C High levels of expression in ventral thalamus.
TS22: hypothalamus Strong Regionally restricted 1C High levels of expression in caudal portions of hypothalamus.
TS22: dorsal thalamus Ambiguous Regionally restricted 1C
TS22: midbrain mantle layer Present 1C
TS22: superior colliculus Present 1C Expression in tectum in layers.
TS22: midbrain tegmentum Present 1C
TS22: hindbrain mantle layer Present 1C
TS22: brainstem Present Widespread 1C
TS22: spinal cord Present Widespread 1C
TS22: ventricular layer Absent 1C No expression in ventricular zone (neuroepithelium) of central nervous system
TS22: dorsal root ganglion Strong 1C
TS22: nasal epithelium Present 1C
TS22: gut Present 1C

Specimen 1D: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS22: telencephalon mantle layer Present 1D
TS22: telencephalon septum Present 1D
TS22: brainstem Present Widespread 1D
TS22: spinal cord Present Widespread 1D
TS22: vertebral cartilage condensation Present 1D
TS22: esophagus Present 1D Expression in digestive tract, including esophagus

Specimen 1E: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS22: cerebral cortex Present Regionally restricted 1E Specific expression throughout the preplate, particularly at inner and outer edges.
TS22: diencephalon mantle layer Present 1E
TS22: hindbrain mantle layer Present 1E
TS22: midbrain mantle layer Present 1E
TS22: epithalamus Present 1E
TS22: hypothalamus Present Regionally restricted 1E Expression in anterior hypothalamic area.
TS22: cerebellum Present 1E
TS22: mammillary area Present 1E
TS22: tectum Present 1E

Specimen 1F: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS22: cochlear ganglion Present 1F In developing cochlear system, expression confined to eighth cranial nerve ganglion.

Specimen 1G: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS22: pancreas Present 1G

Specimen 1H: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS22: lung Strong Regionally restricted 1H Intense expression around some of larger bronchi

Specimen 1I: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS22: alimentary system Present Regionally restricted 1I Expression in wall of digestive tract.

Specimen 2J: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS22: telencephalon septum Present 2J
TS22: hypothalamus Present Regionally restricted 2J Expression in anterior hypothalamic area
TS22: mammillary area Present 2J
TS22: preoptic area Present 2J

Specimen 2K: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS22: tectum Strong Regionally restricted 2K
TS22: midbrain ventricular layer Absent 2K In the midbrain, no expression in neuroepithelium (ventricular zone).

Specimen 2L: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS22: cerebellum mantle layer Present 2L
TS22: cerebellum Present Regionally restricted 2L Expression in deep cortical nuclei.

Specimen not shown: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS22: brainstem Present Scattered Expression in abundant, scattered cells in brainstem and spinal cord.
TS22: spinal cord Present Scattered Expression in abundant, scattered cells in brainstem and spinal cord.

Specimen 3A: postnatal day 7 (more )
Structure Level Pattern Image Note
TS28: cortical layer I Strong 3A
TS28: cortical layer V Strong 3A
TS28: cortical layer II Weak 3A
TS28: cortical layer III Weak 3A
TS28: piriform cortex Strong 3A
TS28: basal ganglia Present Scattered 3A
TS28: caudate-putamen Present Scattered 3A
TS28: globus pallidus Present Scattered 3A
TS28: basal forebrain Moderate Widespread 3A
TS28: anterior dorsal thalamic nucleus Present 3A Regional differential expresion in hippocampal and thalamic subregions.
TS28: medial dorsal thalamic nucleus Present 3A Regional differential expresion in hippocampal and thalamic subregions.
TS28: nucleus reuniens Present 3A Regional differential expresion in hippocampal and thalamic subregions.
TS28: reticular thalamic nucleus Present 3A Regional differential expresion in hippocampal and thalamic subregions.
TS28: hippocampus CA1 Present 3A
TS28: hippocampus CA3 Strong 3A Expression most intense in CA3.
TS28: hippocampus Present Scattered 3A Expression in scattered hilar cells.
TS28: hippocampus stratum oriens Present 3A
TS28: dentate gyrus Absent 3A

Specimen 3B: postnatal day 7 (more )
Structure Level Pattern Image Note
TS28: lateral habenular nucleus Strong 3B
TS28: medial habenular nucleus Present 3B
TS28: paraventricular thalamic nucleus Present 3B Medium intensity expression in periventricular thalamic nucleus.


Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
04/23/2024
MGI 6.23
The Jackson Laboratory