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Gene Expression Data
Assay Details
Assay
Reference: J:57295 Swiderski RE, et al., Expression of the Mf1 gene in developing mouse hearts: implication in the development of human congenital heart defects. Dev Dyn. 1999 Sep;216(1):16-27
Assay type: RNA in situ
MGI Accession ID: MGI:5897797
Gene symbol: Foxc1
Gene name: forkhead box C1
Probe: Mf1 cDNA1
Probe preparation: Antisense labelled with S35 RNA
Visualized with: Autoradiography
Results
Specimen 1A/B: embryonic day 8.5 (more )
Structure Level Pattern Image Note
TS13: somite Strong 1A/B
TS13: pericardio-peritoneal canal mesothelium Strong Regionally restricted 1A/B Strong expression in dorsal portion of mesenchyme around pericardial-peritoneal canal.
TS13: mesenchyme Weak Regionally restricted 1A/B Weak but significant expression in rest of mesenchymal tissues.
TS13: endocardial tube Weak 1A/B Weak but significant expression in endocardium (endothelial lining) of heart tube.

Specimen 1C/D: embryonic day 9.5 (more )
Structure Level Pattern Image Note
TS15: heart Trace 1C/D Very little expression above background was detected.

Specimen E10.5-E11 not shown: embryonic day 10.5-11.0 (more )
Structure Level Pattern Image Note
TS17: aortic sac Present Regionally restricted Expression in dorsal portion of aortic sac.

Specimen 2A/B: embryonic day 11.0 (more )
Structure Level Pattern Image Note
TS18: somite Strong 2A/B
TS18: mediastinum Strong Regionally restricted 2A/B Strong expression in mesenchyme surrounding anterior cardinal vein, bronchi and foreut.
TS18: septum primum Weak 2A/B Expression above background in septum primum.
TS18: heart atrium Strong Regionally restricted 2A/B Expression in inner layer of atrial wall.

Specimen 2C/D: embryonic day 11.0 (more )
Structure Level Pattern Image Note
TS18: somite Strong 2C/D
TS18: mediastinum Strong Regionally restricted 2C/D Strong expression in mesenchyme surrounding anterior cardinal vein, bronchi and foregut.
TS18: umbilical vein Present 2C/D
TS18: heart atrium Present Regionally restricted 2C/D Cardiac tissue expression predominantly in dorsal component of septum primum and inner layer of atrial wall.
TS18: septum primum Present Regionally restricted 2C/D Cardiac tissue expression predominantly in dorsal component of septum primum and inner layer of atrial wall.
TS18: primitive ventricle Weak Regionally restricted 2C/D To a lesser extent, expression in trabeculated wall of ventricle.

Specimen 3A,4A: embryonic day 11.0 (more )
Structure Level Pattern Image Note
TS18: mediastinum Strong Regionally restricted 3A , 4A Strong expression in mesenchyme surrounding laryngeo-tracheal groove.
TS18: septum primum Present 3A , 4A

Specimen 3B,4B: embryonic day 11.0 (more )
Structure Level Pattern Image Note
TS18: mediastinum Strong Regionally restricted 4B , 3B Strong expression in mesenchyme surrounding laryngeo-tracheal groove.
TS18: septum primum Present 3B , 4B
TS18: heart atrium Weak 3B , 4B Authors report weak but significant expression in inner layer of atrial wall

Specimen 3C,4C: embryonic day 11.0 (more )
Structure Level Pattern Image Note
TS18: mediastinum Strong Regionally restricted 4C , 3C Strong expression in mesenchyme surrounding laryngeo-tracheal groove.
TS18: septum primum Present 4C , 3C

Specimen 3D,4D: embryonic day 11.0 (more )
Structure Level Pattern Image Note
TS18: mediastinum Strong Regionally restricted 4D , 3D Strong expression in mesenchyme surrounding laryngeo-tracheal groove.

Specimen 3E,4E: embryonic day 11.0 (more )
Structure Level Pattern Image Note
TS18: mediastinum Strong Regionally restricted 3E , 4E Strong expression in mesenchyme surrounding laryngeo-tracheal groove.
TS18: heart mesenchyme Weak Regionally restricted 4E , 3E Authors report weak but significant expression in dense layer of mesenchymal tissue which is continuous with mesenchyme surrounding laryngo-tracheo groove, thus likely representing the spina vestibulli.

Specimen 3F,4F: embryonic day 11.0 (more )
Structure Level Pattern Image Note
TS18: mediastinum Strong Regionally restricted 3F , 4F Strong expression in mesenchyme surrounding laryngeo-tracheal groove.

Specimen 5A/B: embryonic day 13.0 (more )
Structure Level Pattern Image Note
TS21: bronchus mesenchyme Present 5A/B
TS21: rib pre-cartilage condensation Present 5A/B
TS21: thoracic body wall Present Regionally restricted 5A/B Expression in inner cell layer of thoracic body wall.
TS21: interatrial septum Present Regionally restricted 5A/B Expression in ventral component of atrial septum.
TS21: septum primum Present Regionally restricted 5A/B Expression in ventral part of septum primum, which is continuous with the atrioventricular cusion and forms the atrial septum.
TS21: atrioventricular endocardial cushion Present 5A/B
TS21: mitral valve Present 5A/B
TS21: right atrium venous valve Present 5A/B
TS21: tricuspid valve Present 5A/B
TS21: interventricular septum Absent 5A/B
TS21: trabecular myocardium Present Regionally restricted 5A/B Expression in trabeculated region of ventricular wall.

Specimen 5C/D: embryonic day 13.0 (more )
Structure Level Pattern Image Note
TS21: endocardial lining Strong Regionally restricted 5C/D Strongest expression in endocardium covering septa and valves, including atrial septum, mitral valve, tricuspid valve and venous valve.
TS21: heart mesenchyme Present 5C/D Expression decreases in mesenchymal cells that have migrated into cushion tissue, valve leaflets and intraventicular septum.

Specimen 6A/B: embryonic day 13.0 (more )
Structure Level Pattern Image Note
TS21: aortic valve Present 6A/B
TS21: heart ventricle Present Regionally restricted 6A/B Expression in in tissue between right and left ventricles.

Specimen 6C/D: embryonic day 13.0 (more )
Structure Level Pattern Image Note
TS21: pulmonary valve Present 6C/D

Specimen 7A/B: embryonic day 15.0 (more )
Structure Level Pattern Image Note
TS23: heart Weak 7A/B Decreased expression in heart at E15 compared to that at E13.
TS23: interatrial septum Present 7A/B
TS23: mitral valve Present 7A/B
TS23: tricuspid valve Present 7A/B
TS23: trabecular myocardium Present Regionally restricted 7A/B Expression in trabeculated regions of ventricles.

Specimen 7C/D: embryonic day 15.0 (more )
Structure Level Pattern Image Note
TS23: interatrial septum Present 7C/D
TS23: mitral valve Present 7C/D
TS23: right atrium venous valve Present 7C/D
TS23: tricuspid valve Present 7C/D

Specimen 7G/H: embryonic day 15.0 (more )
Structure Level Pattern Image Note
TS23: aortic valve Present 7G/H

Specimen 7I/J: embryonic day 15.0 (more )
Structure Level Pattern Image Note
TS23: pulmonary valve Present 7I/J


Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/25/2025
MGI 6.24
The Jackson Laboratory