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Gene Expression Data
Assay Details
Assay
Reference: J:47443 Romert A, et al., The identification of a 9-cis retinol dehydrogenase in the mouse embryo reveals a pathway for synthesis of 9-cis retinoic acid. Proc Natl Acad Sci U S A. 1998 Apr 14;95(8):4404-9
Assay type: RNA in situ
MGI Accession ID: MGI:5806579
Gene symbol: Rdh5
Gene name: retinol dehydrogenase 5
Probe: D2B1
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Results
Specimen 4A: embryonic day 10.0 (more )
Structure Level Pattern Image Note
TS16: neural tube lateral wall Present Regionally restricted 4A Expression is in the alar plate.
Specimen 4C: embryonic day 11.0 (more )
Structure Level Pattern Image Note
TS18: myotome Present 4C
TS18: spinal ganglion Present 4C
TS18: body wall Present Single cells 4C Expression is in migrating muscle pprogenitor cells.
TS18: gonad primordium Present Regionally restricted 4C Expression is in the genital ridge.
Specimen 4D: embryonic day 11.0 (more )
Structure Level Pattern Image Note
TS18: midbrain Strong Regionally restricted 4D Expression is in the basal cells of the neuroepithelium of the mesencephalic flexure.
TS18: metencephalon basal plate Strong Regionally restricted 4D Expression is in collections of cells in the pons.
TS18: cerebellum primordium Strong 4D
Specimen 4E: embryonic day 11.0 (more )
Structure Level Pattern Image Note
TS18: lens vesicle Present 4E
TS18: retina Present 4E
TS18: eye Present Regionally restricted 4E Expression is in the neural crest-derived cells of the anterior eye segment.
Specimen 4F: embryonic day 11.0 (more )
Structure Level Pattern Image Note
TS18: midbrain Present Graded 4F There is a dorso-ventral gradient of expression.
TS18: midbrain floor plate Present 4F
Specimen 4G: embryonic day 11.0 (more )
Structure Level Pattern Image Note
TS18: future spinal cord Strong 4G
TS18: notochord Strong 4G
TS18: dermomyotome Strong Regionally restricted 4G
TS18: sclerotome Absent 4G
Specimen Table 1 E10: embryonic day 10.0 (more )
Structure Level Pattern Image Note
TS16: lung mesenchyme Strong
TS16: primitive ventricle Strong Regionally restricted Expression is in the trabecular layer.
TS16: Rathke's pouch Present
TS16: cardinal vein Present
TS16: cranial ganglion Present
TS16: dorsal aorta Present
TS16: dorsal root ganglion Present
TS16: floor plate Present
TS16: future hindbrain floor plate Present
TS16: future midbrain Present
TS16: gut endoderm Present
TS16: lens pit Present
TS16: liver Present
TS16: mesonephric tubule Present
TS16: midbrain-hindbrain junction Present
TS16: nephric duct, mesonephric portion Present
TS16: notochord Present
TS16: optic cup Present
TS16: optic stalk Present
TS16: outflow tract Present
TS16: respiratory system epithelium Present
TS16: trachea Present
TS16: urogenital ridge Present
TS16: neural tube Present Expression is in cells close to the central canal.
TS16: future midbrain floor plate Present Single cells
TS16: future hindbrain Present Regionally restricted Expression is in the pons.
TS16: eye Present Regionally restricted Expression is in neural crest-derived corneal precursor cells.
TS16: future brain Present Regionally restricted Expression is surrounding the central canal.
TS16: inner ear Present Regionally restricted Expression is in the cochlear portion and the endolymphatic duct.
TS16: limb bud Absent
Specimen Table 1 E11: embryonic day 11.0 (more )
Structure Level Pattern Image Note
TS18: Rathke's pouch Present
TS18: cardinal vein Present
TS18: cranial ganglion Present
TS18: dorsal aorta Present
TS18: dorsal root ganglion Present
TS18: endolymphatic appendage Present
TS18: floor plate Present
TS18: intestine epithelium Present
TS18: lens vesicle Present
TS18: liver Present
TS18: mesonephric tubule Present
TS18: midbrain Present
TS18: midbrain-hindbrain junction Present
TS18: nephric duct, mesonephric portion Present
TS18: notochord Present
TS18: optic stalk Present
TS18: outflow tract Present
TS18: respiratory system epithelium Present
TS18: retina Present
TS18: stomach epithelium Present
TS18: trachea Present
TS18: urogenital ridge Present
TS18: neural tube Present Regionally restricted Expression is in cells close to the central canal.
TS18: midbrain floor plate Present Single cells
TS18: metencephalon basal plate Present Regionally restricted Expression is in the pons.
TS18: eye Present Regionally restricted Expression is in neural crest-derived corneal precursor cells.
TS18: gut Present Regionally restricted Expression is in the endoderm.
TS18: primitive ventricle Present Regionally restricted Expression is in the trabecular layer.
TS18: telencephalon Present Regionally restricted Expression is in the roof.
TS18: inner ear Present Regionally restricted Expression is in the cochlear portion.
TS18: limb bud Absent
Specimen not shown: embryonic day 8.5 (more )
Structure Level Pattern Image Note
TS13: neural ectoderm Present
TS13: future prosencephalon Weak
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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05/07/2024
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