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Gene Expression Data
Assay Details
Assay
Reference: J:137253 Plachez C, et al., Nuclear factor I gene expression in the developing forebrain. J Comp Neurol. 2008 May 20;508(3):385-401
Assay type: Immunohistochemistry
MGI Accession ID: MGI:5792121
Gene symbol: Nfia
Gene name: nuclear factor I/A
Antibody: Anti-NFIA
Detection system: Secondary antibody coupled to horseradish peroxidase
Results
Specimen 1D: postnatal; Nfiatm1Rmg/Nfiatm1Rmg (more )
Note: Vibratome section.
Structure Level Pattern Image Note
TS28: brain Absent 1D

Specimen 1E: postnatal (more )
Note: Vibratome section.
Structure Level Pattern Image Note
TS28: brain Present 1E

Specimen 2A/A': embryonic day 12.5 (more )
Note: Vibratome section.
Structure Level Pattern Image Note
TS20: telencephalon Present Regionally restricted 2A , 2A' Expressed in the roofplate.

Specimen 2C/C': embryonic day 13.5 (more )
Note: Vibratome section.
Structure Level Pattern Image Note
TS21: cortical preplate Present 2C , 2C'

Specimen 2E/E': embryonic day 15.5 (more )
Note: Vibratome section.
Structure Level Pattern Image Note
TS23: neocortex Present Regionally restricted 2E' , 2E Expressed in layers IV, V, and VI.
TS23: cerebral cortex marginal layer Present 2E' , 2E
TS23: cerebral cortex subventricular zone Present 2E' , 2E
TS23: cerebral cortex ventricular layer Present 2E' , 2E
TS23: cortical subplate Present 2E' , 2E

Specimen 2G/G': embryonic day 17.5 (more )
Note: Vibratome section.
Structure Level Pattern Image Note
TS25: cerebral cortex marginal zone Present 2G' , 2G
TS25: cerebral cortex subventricular zone Present 2G' , 2G
TS25: cerebral cortex ventricular zone Present 2G' , 2G
TS25: cortical subplate Present 2G' , 2G
TS25: neocortex Present Regionally restricted 2G , 2G' Expressed in layer VI.

Specimen 3A/A': postnatal day 0 (more )
Note: Vibratome section.
Structure Level Pattern Image Note
TS27: cortical layer II Strong 3A , 3A'
TS27: cortical layer III Strong 3A , 3A'
TS27: cortical layer V Strong 3A , 3A'
TS27: cortical layer VI Strong 3A , 3A'

Specimen 3C/C': postnatal day 7 (more )
Note: Vibratome section.
Structure Level Pattern Image Note
TS28: cortical layer II Present 3C' , 3C Expression began to decline, particularly in the upper layers.
TS28: cortical layer III Present 3C' , 3C Expression began to decline, particularly in the upper layers.
TS28: cortical layer V Present 3C' , 3C Expression began to decline, particularly in the upper layers.
TS28: cortical layer VI Present 3C' , 3C Expression began to decline, particularly in the upper layers.

Specimen 3E/E': postnatal day 14 (more )
Note: Vibratome section.
Structure Level Pattern Image Note
TS28: cortical layer IV Present 3E , 3E' Reduced expression.
TS28: piriform cortex Present 3E , 3E'

Specimen 3G/G': postnatal adult (more )
Note: Vibratome section.
Structure Level Pattern Image Note
TS28: piriform cortex Present 3G' , 3G

Specimen 4A/A': embryonic day 13.5 (more )
Note: Vibratome section.
Structure Level Pattern Image Note
TS21: neocortex Present Uniform 4A' , 4A

Specimen 4C/C': embryonic day 15.5 (more )
Note: Vibratome section.
Structure Level Pattern Image Note
TS23: neocortex Present Uniform 4C , 4C'

Specimen 4E/E': embryonic day 17.5 (more )
Note: Vibratome section.
Structure Level Pattern Image Note
TS25: neocortex Present Uniform 4E , 4E'

Specimen 4G/G'/G"/G'": postnatal day 7 (more )
Note: Vibratome section.
Structure Level Pattern Image Note
TS28: neocortex Present Non-Uniform 4G" , 4G , 4G' , 4G'" Lower level expression in rostral compared to caudal.

Specimen 4I/I'/I"/I'": postnatal day 14 (more )
Note: Vibratome section.
Structure Level Pattern Image Note
TS28: neocortex Present Non-Uniform 4I' , 4I'" , 4I , 4I" Lower level expression in rostral compared to caudal.

Specimen 8A: embryonic day 15.5 (more )
Note: Vibratome section.
Structure Level Pattern Image Note
TS23: neocortex Strong Regionally restricted 8A Expressed in the cingulate cortex.
TS23: cerebral cortex Strong Regionally restricted 8A Expressed in the cingulate cortex. More widely expressed throughout the ventricular zone and in cells of the indusium griseum and the glial wedge compared to NFIB.

Specimen 8C: embryonic day 18.5 (more )
Note: Vibratome section.
Structure Level Pattern Image Note
TS26: cerebral cortex Present Regionally restricted 8C Expressed in the indusium griseum, the glial wedge, and also in the subcallosal sling.

Specimen 8E: postnatal day 0 (more )
Note: Vibratome section.
Structure Level Pattern Image Note
TS27: cerebral cortex Present Regionally restricted 8E Expressed in the indusium griseum, the glial wedge, and also in the subcallosal sling.

Specimen 8G: postnatal day 14 (more )
Note: Vibratome section.
Structure Level Pattern Image Note
TS28: cerebral cortex ventricular zone Present 8G
TS28: cerebral cortex Present Regionally restricted 8G Expression at the midline was higher than NFIB expression.

Specimen 8I/I': postnatal adult (more )
Note: Vibratome section.
Structure Level Pattern Image Note
TS28: cerebral cortex subventricular zone Present 8I
TS28: cerebral cortex ventricular zone Present 8I
TS28: cerebral cortex Present Regionally restricted 8I' , 8I Expressed in the indusium griseum. Present more dorsomedially than the NFIB-expressing cells.

Specimen 9A/A': embryonic day 12.5 (more )
Note: Vibratome section.
Structure Level Pattern Image Note
TS20: prethalamus Present 9A
TS20: telencephalon Present Regionally restricted 9A Expressed in amygdala.
TS20: optic chiasma Weak 9A' , 9A
TS20: thalamus Weak Regionally restricted 9A Expressed in posterior thalamus.
TS20: hypothalamus Weak 9A

Specimen 9C/C': embryonic day 13.5 (more )
Note: Vibratome section.
Structure Level Pattern Image Note
TS21: prethalamus Present 9C
TS21: optic chiasma Weak 9C' , 9C
TS21: telencephalon Present Regionally restricted 9C Expressed in amygdala.
TS21: thalamus Weak Regionally restricted 9C Expressed in posterior thalamus.
TS21: hypothalamus Weak 9C

Specimen 10A/A': embryonic day 13.5 (more )
Note: Vibratome section.
Structure Level Pattern Image Note
TS21: telencephalon Present Regionally restricted 10A' , 10A Expressed in the hippocampal primordium.

Specimen 10C/C': embryonic day 15.5 (more )
Note: Vibratome section.
Structure Level Pattern Image Note
TS23: hippocampus Present Widespread 10C' , 10C Expressed throughout the layers.

Specimen 10E/E': embryonic day 17.5 (more )
Note: Vibratome section.
Structure Level Pattern Image Note
TS25: dentate gyrus Present 10E , 10E'
TS25: hippocampus Present Regionally restricted 10E' , 10E Expressed in both the stratum oriens and the stratum pyramidale. No expression in the stratum radiatum.

Specimen 11A/A'/A"/A'": postnatal day 5 (more )
Note: Vibratome section.
Structure Level Pattern Image Note
TS28: dorsal thalamus Present 11A
TS28: CA3 pyramidal cell layer Present 11A , 11A' , 11A" More highly expressed in CA3 compared to CA2.
TS28: CA2 pyramidal cell layer Present 11A" , 11A' , 11A Expression in CA2 was higher than in CAl.
TS28: CA1 pyramidal cell layer Present 11A , 11A'
TS28: dentate gyrus Strong 11A' , 11A'" , 11A
TS28: hippocampus pyramidal cell layer Present Regionally restricted 11A' Expressed in the stratum pyramidale.

Specimen 11C/C': postnatal day 7 (more )
Note: Vibratome section.
Structure Level Pattern Image Note
TS28: dorsal thalamus Absent 11C
TS28: dentate gyrus Strong 11C
TS28: CA1 pyramidal cell layer Present 11C , 11C' Increased expression.
TS28: CA2 pyramidal cell layer Present 11C' , 11C Decreased expression.
TS28: CA3 pyramidal cell layer Present 11C' , 11C Decreased expression.

Specimen 11E/E': postnatal day 14 (more )
Note: Vibratome section.
Structure Level Pattern Image Note
TS28: dentate gyrus Strong 11E , 11E'
TS28: CA1 pyramidal cell layer Present 11E' , 11E Increased expression.
TS28: CA2 pyramidal cell layer Present 11E , 11E' Decreased expression.
TS28: CA3 pyramidal cell layer Present 11E , 11E' Decreased expression.

Specimen 11G/G'/G"/G'": postnatal adult (more )
Note: Vibratome section.
Structure Level Pattern Image Note
TS28: dentate gyrus granule cell layer Weak Regionally restricted 11G , 11G' , 11G'" Expressed in the inner granular layer.
TS28: CA2 pyramidal cell layer Weak 11G" , 11G , 11G'
TS28: CA3 pyramidal cell layer Weak 11G" , 11G , 11G'


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Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
04/30/2024
MGI 6.23
The Jackson Laboratory