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Gene Expression Data
Assay Details
Assay
Reference: J:56240 Lichanska AM, et al., Differentiation of the mononuclear phagocyte system during mouse embryogenesis: the role of transcription factor PU.1. Blood. 1999 Jul 1;94(1):127-38
Assay type: RNA in situ
MGI Accession ID: MGI:5762978
Gene symbol: Csf1r
Gene name: colony stimulating factor 1 receptor
Probe: c-fms probe
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Results
Specimen 1A: embryonic day 10.5 (more )
Structure Level Pattern Image Note
TS17: branchial arch Present 1A
TS17: head Present 1A
TS17: embryo Present Spotted 1A Expressed in a very extensive speckled pattern throughout the embryo. Labeled cells are particularly concentrated in the head, around the branchial arches, and along the dorsal midline.

Specimen 1B: embryonic day 11.0 (more )
Structure Level Pattern Image Note
TS18: liver Present 1B
TS18: embryo Present Spotted 1B Expressed in a fine speckled pattern of labeled cells throughout the embryo.

Specimen 1C: embryonic day 12.5 (more )
Structure Level Pattern Image Note
TS20: foot epithelium Present Regionally restricted 1C Expressed at the apical ectodermal ridge.
TS20: hindlimb interdigital region Present Regionally restricted 1C Expressed in between the digits.

Specimen 1D: embryonic day 12.5 (more )
Structure Level Pattern Image Note
TS20: digit epithelium Present Regionally restricted 1D Positive cells leaved the marginal sinus and infiltrated the mesenchyme.
TS20: digit mesenchyme Present Regionally restricted 1D Positive cells leaved the marginal sinus and infiltrated the mesenchyme.

Specimen 1E: embryonic day 12.5 (more )
Note: To improve the penetration, some embryos were cut midsagitally before hybridization.
Structure Level Pattern Image Note
TS20: diencephalon ventricular layer Present Regionally restricted 1E Expressed in cells lining the ventricular surface.
TS20: hindbrain ventricular layer Present Regionally restricted 1E Expressed in cells lining the ventricular surface.
TS20: midbrain ventricular layer Present Regionally restricted 1E Expressed in cells lining the ventricular surface.
TS20: telencephalon ventricular layer Present Regionally restricted 1E Expressed in cells lining the ventricular surface.

Specimen 1F: embryonic day 11.5 (more )
Structure Level Pattern Image Note
TS19: body wall Present Regionally restricted 1F Expressed along the dorsal midline, closely associated with the vascular spaces adjacent to the neural tube, within the premuscle mass and the epidermis.

Specimen 1G: embryonic day 11.5 (more )
Structure Level Pattern Image Note
TS19: brain Present 1G Many labeled cells have engulfed dying cells and contain pyknotic nuclei.

Specimen 1H: embryonic day 11.5 (more )
Structure Level Pattern Image Note
TS19: liver Present 1H Expressed in cells showing stellate morphology and intimate association with smaller hematopoietic cells.

Specimen 7A: embryonic day 11.5 (more )
Structure Level Pattern Image Note
TS19: embryo Present Spotted 7A Expressed in a speckled pattern throughout the embryo.
TS19: brain Present Spotted 7A Expressed in a speckled pattern.
TS19: branchial arch Present Spotted 7A Expressed in a speckled pattern.
TS19: heart Present Spotted 7A Expressed in a speckled pattern.
TS19: limb Present Spotted 7A Expressed in a speckled pattern.
TS19: liver Present Spotted 7A Expressed in a speckled pattern.
TS19: body wall Present Regionally restricted 7A Expressed along the dorsal midline and under the skin.

Specimen 7B: embryonic day 11.5; Spi1tm1Ram/Spi1tm1Ram (more )
Structure Level Pattern Image Note
TS19: embryo Present Spotted 7B Expressed in a speckled pattern throughout the embryo, same as in the wild-type.
TS19: brain Present Spotted 7B Expressed in a speckled pattern, same as in the wild-type.
TS19: branchial arch Present Spotted 7B Expressed in a speckled pattern, same as in the wild-type.
TS19: heart Present Spotted 7B Expressed in a speckled pattern, same as in the wild-type.
TS19: limb Present Spotted 7B Expressed in a speckled pattern, same as in the wild-type.
TS19: liver Present Spotted 7B Expressed in a speckled pattern, same as in the wild-type.
TS19: body wall Present Regionally restricted 7B Expressed along the dorsal midline and under the skin, same as in the wild-type.

Specimen 7C: embryonic day 11.5; Spi1tm1Ram/Spi1tm1Ram (more )
Structure Level Pattern Image Note
TS19: liver Present 7C

Specimen 7D: embryonic day 11.5; Spi1tm1Ram/Spi1tm1Ram (more )
Structure Level Pattern Image Note
TS19: limb bud Present 7D Similar morphology and location to those in wild-type.

Specimen not shown: embryonic day 9.5 (more )
Structure Level Pattern Image Note
TS15: yolk sac Present Single cells Expressed as isolated individual cells rather than clusters associated with blood islands.

Specimen not shown: embryonic day 10.0 (more )
Structure Level Pattern Image Note
TS16: heart Present Regionally restricted Expressed a band overlying the developing heart.

Specimen not shown: embryonic day 11.5 (more )
Structure Level Pattern Image Note
TS19: eye Present


Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/25/2025
MGI 6.24
The Jackson Laboratory