About   Help   FAQ
Gene Expression Data
Assay Details
Assay
Reference: J:159029 Matsuda I, et al., Development of the somatosensory cortex, the cerebellum, and the main olfactory system in Semaphorin 3F knockout mice. Neurosci Res. 2010 Mar;66(3):321-9
Assay type: RNA in situ
MGI Accession ID: MGI:5754742
Gene symbol: Sema3f
Gene name: sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3F
Probe: Sema3F probe2
Probe preparation: Antisense labelled with P33 RNA
Visualized with: Autoradiography
Results
Specimen 1 E13: embryonic day 13.5 (more )
Structure Level Pattern Image Note
TS21: cortical plate Strong 1E13 left
TS21: olfactory cortex mantle layer Strong 1E13 left
TS21: thalamus Strong 1E13 left
TS21: telencephalon Strong Regionally restricted 1E13 left Expressed in basal telencephalon.
TS21: cerebral cortex ventricular layer Weak 1E13 left
TS21: midbrain roof plate Strong Regionally restricted 1E13 left Expressed in inferior colliculus.
Specimen 1 E15: embryonic day 15.5 (more )
Structure Level Pattern Image Note
TS23: cortical plate Strong 1E15 left
TS23: inferior colliculus Strong 1E15 left
TS23: olfactory cortex mantle layer Strong 1E15 left
TS23: thalamus Strong 1E15 left
TS23: telencephalon Strong Regionally restricted 1E15 left Expressed in basal telencephalon.
TS23: cerebral cortex ventricular layer Weak 1E15 left
Specimen 1 E18: embryonic day 18.5 (more )
Structure Level Pattern Image Note
TS26: cortical plate Strong 1E18 left
TS26: inferior colliculus Strong 1E18 left
TS26: olfactory cortex mantle layer Strong 1E18 left
TS26: thalamus Strong 1E18 left
TS26: telencephalon Strong Regionally restricted 1E18 left Expressed in basal telencephalon.
TS26: cerebral cortex ventricular zone Weak 1E18 left
Specimen 1 P1: postnatal day 1 (more )
Structure Level Pattern Image Note
TS27: cerebellum Present 1P1 left
TS27: main olfactory bulb Present 1P1 left
TS27: neocortex Present 1P1 left
Specimen 1 P7: postnatal day 7 (more )
Structure Level Pattern Image Note
TS28: cerebellum Present 1P7 left
TS28: main olfactory bulb Present 1P7 left
TS28: neocortex Present 1P7 left Expression was downregulated from P1 to P7.
Specimen 1 P14: postnatal day 14 (more )
Structure Level Pattern Image Note
TS28: cerebellum Present 1P14 left
TS28: main olfactory bulb Present 1P14 left
TS28: neocortex Present 1P14 left
Specimen 1 P21: postnatal day 21 (more )
Structure Level Pattern Image Note
TS28: inferior colliculus Present 1P21 left Highest expression.
TS28: caudate-putamen Moderate 1P21 left Low to moderate expression.
TS28: cerebellum granule cell layer Moderate 1P21 left Low to moderate expression.
TS28: cerebral cortex Moderate 1P21 left Low to moderate expression.
TS28: main olfactory bulb mitral cell layer Moderate 1P21 left Low to moderate expression.
TS28: superior colliculus Moderate Regionally restricted 1P21 left Expressed in the deep layers.
Specimen 2D WT: postnatal day 42-70 (more )
Structure Level Pattern Image Note
TS28: brain Present 2D upper left
Specimen 2D KO: postnatal day 42-70; Sema3ftm2Atai/Sema3ftm2Atai (more )
Structure Level Pattern Image Note
TS28: brain Absent 2D upper right
Specimen 2FG: embryonic day 18.5 (more )
Structure Level Pattern Image Note
TS26: caudate-putamen Present 2FG
TS26: cerebellum Present 2FG
TS26: cerebral cortex Present 2FG
TS26: inferior colliculus Present 2FG
TS26: main olfactory bulb Present 2FG
TS26: medulla oblongata Present 2FG
TS26: thalamus Present 2FG
Specimen 2FH: embryonic day 18.5; Sema3ftm1Atai/Sema3ftm1Atai (more )
Structure Level Pattern Image Note
TS26: brain Absent 2FH
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
Warranty Disclaimer, Privacy Notice, Licensing, & Copyright
Send questions and comments to User Support. 		last database update
03/25/2025
MGI 6.24 		The Jackson Laboratory