Gene Expression Data
Assay Details
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Assay
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Reference:
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J:20922
Hatini V, et al., Expression of winged helix genes, BF-1 and BF-2, define adjacent domains within the developing forebrain and retina. J Neurobiol. 1994 Oct;25(10):1293-309
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Assay type:
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RNA in situ
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MGI Accession ID:
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MGI:5609290
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Gene symbol:
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Foxd1
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Gene name:
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forkhead box D1
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Probe:
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3P1 probe
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Probe preparation:
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Antisense labelled with S35 RNA
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Visualized with:
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Autoradiography
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Results
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Specimen
3A/B:
embryonic day 9.5
(more  )
Specimen
3A/B:
(close  )
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Genetic Background:
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involves: C57BL/6J * CBA/J
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Age:
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embryonic day 9.5
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Sex:
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Not Specified
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Type:
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section
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Fixation:
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4% Paraformaldehyde
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Embedding:
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Paraffin
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| Structure |
Level |
Pattern |
Image |
Note |
| TS15: optic cup |
Present |
Regionally restricted |
3A/B
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Expression is posterior (temporal half).
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| TS15: optic stalk |
Present |
Regionally restricted |
3A/B
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Expression is posterior (temporal half).
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| TS15: 3rd ventricle |
Present |
Regionally restricted |
3A/B
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Specimen
3C/D:
embryonic day 10.5
(more )
Specimen
3C/D:
(close )
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Genetic Background:
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involves: C57BL/6J * CBA/J
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Age:
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embryonic day 10.5
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Sex:
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Not Specified
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Type:
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section
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Fixation:
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4% Paraformaldehyde
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Embedding:
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Paraffin
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| Structure |
Level |
Pattern |
Image |
Note |
| TS17: optic stalk |
Present |
Regionally restricted |
3C/D
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Expression is posterior.
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| TS17: optic cup |
Present |
Regionally restricted |
3C/D
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Expression is in the temporal hemiretina.
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| TS17: diencephalon |
Present |
Regionally restricted |
3C/D
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Expression is in the hypothalamus.
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Specimen
3E/F:
embryonic day 10.5
(more )
Specimen
3E/F:
(close )
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Genetic Background:
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involves: C57BL/6J * CBA/J
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Age:
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embryonic day 10.5
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Sex:
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Not Specified
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Type:
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section
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Fixation:
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4% Paraformaldehyde
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Embedding:
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Paraffin
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| Structure |
Level |
Pattern |
Image |
Note |
| TS17: diencephalon |
Present |
Regionally restricted |
3E/F
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Expression is in a limited region adjacent to the telencephalon at the septal region.
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Specimen
3G/H:
embryonic day 12.5
(more )
Specimen
3G/H:
(close )
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Genetic Background:
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involves: C57BL/6J * CBA/J
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Age:
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embryonic day 12.5
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Sex:
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Not Specified
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Type:
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section
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Fixation:
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4% Paraformaldehyde
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Embedding:
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Paraffin
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Specimen
3I/J:
embryonic day 12.5
(more )
Specimen
3I/J:
(close )
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Genetic Background:
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involves: C57BL/6J * CBA/J
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Age:
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embryonic day 12.5
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Sex:
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Not Specified
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Type:
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section
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Fixation:
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4% Paraformaldehyde
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Embedding:
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Paraffin
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Specimen
3K/L:
embryonic day 13.5
(more )
Specimen
3K/L:
(close )
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Genetic Background:
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involves: C57BL/6J * CBA/J
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Age:
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embryonic day 13.5
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Sex:
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Not Specified
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Type:
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section
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Fixation:
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4% Paraformaldehyde
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Embedding:
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Paraffin
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Specimen
3M/N:
embryonic day 13.5
(more )
Specimen
3M/N:
(close )
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Genetic Background:
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involves: C57BL/6J * CBA/J
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Age:
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embryonic day 13.5
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Sex:
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Not Specified
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Type:
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section
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Fixation:
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4% Paraformaldehyde
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Embedding:
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Paraffin
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Specimen
3O/P:
embryonic day 16.5
(more )
Specimen
3O/P:
(close )
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Genetic Background:
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involves: C57BL/6J * CBA/J
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Age:
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embryonic day 16.5
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Sex:
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Not Specified
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Type:
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section
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Fixation:
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4% Paraformaldehyde
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Embedding:
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Paraffin
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| Structure |
Level |
Pattern |
Image |
Note |
| TS24: thalamus ventricular layer |
Present |
Regionally restricted |
3O/P
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Expression is restricted to unfused pockets along the ventricular zone.
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Specimen
4A/B:
embryonic day 11.5
(more )
Specimen
4A/B:
(close )
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Genetic Background:
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involves: C57BL/6J * CBA/J
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Age:
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embryonic day 11.5
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Sex:
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Not Specified
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Type:
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section
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Fixation:
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4% Paraformaldehyde
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Embedding:
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Paraffin
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| Structure |
Level |
Pattern |
Image |
Note |
| TS19: diencephalon |
Present |
Regionally restricted |
4A/B
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Expression is in the ventral thalamus and hypothalamus. The caudal expression domain is limited by the boundary between the ventral and dorsal thalmus, the zona limitans intrathalamica.
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Specimen
4C/D:
embryonic day 11.5
(more )
Specimen
4C/D:
(close )
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Genetic Background:
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involves: C57BL/6J * CBA/J
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Age:
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embryonic day 11.5
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Sex:
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Not Specified
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Type:
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section
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Fixation:
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4% Paraformaldehyde
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Embedding:
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Paraffin
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| Structure |
Level |
Pattern |
Image |
Note |
| TS19: diencephalon |
Present |
Regionally restricted |
4C/D
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Expression is in the ventral thalamus and hypothalamus. The caudal expression domain is limited by the boundary between the ventral and dorsal thalmus, the zona limitans intrathalamica. Absent in the ventral midline.
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| TS19: neural retinal epithelium |
Present |
Regionally restricted |
4C/D
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| TS19: tongue |
Present |
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4C/D
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Specimen
4E/F:
embryonic day 13.5
(more )
Specimen
4E/F:
(close )
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Genetic Background:
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involves: C57BL/6J * CBA/J
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Age:
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embryonic day 13.5
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Sex:
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Not Specified
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Type:
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section
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Fixation:
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4% Paraformaldehyde
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Embedding:
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Paraffin
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| Structure |
Level |
Pattern |
Image |
Note |
| TS21: thalamus |
Present |
Regionally restricted |
4E/F
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Expression is in the ventral thalamus. The caudal expression domain is limited at the zona limitans intrathalamica.
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| TS21: hypothalamus |
Present |
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4E/F
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Specimen
4G/H:
embryonic day 13.5
(more )
Specimen
4G/H:
(close )
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Genetic Background:
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involves: C57BL/6J * CBA/J
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Age:
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embryonic day 13.5
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Sex:
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Not Specified
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Type:
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section
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Fixation:
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4% Paraformaldehyde
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Embedding:
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Paraffin
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Specimen
5C:
embryonic day 10.5
(more )
Specimen
5C:
(close )
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Genetic Background:
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involves: C57BL/6J * CBA/J
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Age:
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embryonic day 10.5
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Sex:
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Not Specified
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Type:
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section
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Fixation:
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4% Paraformaldehyde
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Embedding:
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Paraffin
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| Structure |
Level |
Pattern |
Image |
Note |
| TS17: diencephalon |
Present |
Regionally restricted |
5C
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The boundary of expression is at the septal region. Expression extends caudally from the temporal hemiretina and optic recess.
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Specimen
5F:
embryonic day 11.5
(more )
Specimen
5F:
(close )
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Genetic Background:
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involves: C57BL/6J * CBA/J
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Age:
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embryonic day 11.5
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Sex:
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Not Specified
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Type:
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section
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Fixation:
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4% Paraformaldehyde
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Embedding:
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Paraffin
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| Structure |
Level |
Pattern |
Image |
Note |
| TS19: diencephalon |
Present |
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5F
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The boundary of expression is at the optic recess.
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| TS19: optic recess |
Present |
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5F
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The boundary of expression is at the optic recess.
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Specimen
5I:
embryonic day 16.5
(more )
Specimen
5I:
(close )
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Genetic Background:
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involves: C57BL/6J * CBA/J
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Age:
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embryonic day 16.5
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Sex:
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Not Specified
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Type:
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section
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Fixation:
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4% Paraformaldehyde
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Embedding:
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Paraffin
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| Structure |
Level |
Pattern |
Image |
Note |
| TS24: hypothalamus |
Present |
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5I
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Expression extends caudally from the hypothalamic sulcus.
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Specimen
6A/B:
embryonic day 11.5
(more )
Specimen
6A/B:
(close )
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Genetic Background:
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involves: C57BL/6J * CBA/J
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Age:
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embryonic day 11.5
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Sex:
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Not Specified
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Type:
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section
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Fixation:
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4% Paraformaldehyde
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Embedding:
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Paraffin
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| Structure |
Level |
Pattern |
Image |
Note |
| TS19: retina |
Present |
Regionally restricted |
6A/B
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Expression is in the temporal hemiretina.
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Specimen
7E/F:
embryonic day 11.5
(more )
Specimen
7E/F:
(close )
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Genetic Background:
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involves: C57BL/6J * CBA/J
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Age:
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embryonic day 11.5
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Sex:
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Not Specified
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Type:
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section
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Fixation:
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4% Paraformaldehyde
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Embedding:
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Paraffin
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| Structure |
Level |
Pattern |
Image |
Note |
| TS19: diencephalon |
Present |
Regionally restricted |
7E/F
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Expression is caudal of the suprachiasmatic region. Expression is absent in the ventral midline.
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| TS19: head mesenchyme |
Present |
Regionally restricted |
7E/F
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Expression is in the condensed head mesenchyme surrounding the region of the optic chiasm.
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Specimen
7G/H:
embryonic day 11.5
(more )
Specimen
7G/H:
(close )
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Genetic Background:
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involves: C57BL/6J * CBA/J
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Age:
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embryonic day 11.5
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Sex:
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Not Specified
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Type:
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section
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Fixation:
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4% Paraformaldehyde
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Embedding:
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Paraffin
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| Structure |
Level |
Pattern |
Image |
Note |
| TS19: diencephalon |
Present |
Regionally restricted |
7G/H
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The expression boundary matches the position of the temporal half of the optic stalk as it enters the region of the optic chiasm.
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Specimen
9C:
embryonic day 12.5
(more )
Specimen
9C:
(close )
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Genetic Background:
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involves: C57BL/6J * CBA/J
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Age:
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embryonic day 12.5
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Sex:
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Not Specified
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Type:
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section
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Fixation:
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4% Paraformaldehyde
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Embedding:
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Paraffin
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Specimen
9F:
embryonic day 12.5
(more )
Specimen
9F:
(close )
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Genetic Background:
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involves: C57BL/6J * CBA/J
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Age:
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embryonic day 12.5
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Sex:
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Not Specified
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Type:
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section
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Fixation:
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4% Paraformaldehyde
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Embedding:
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Paraffin
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Specimen
9I:
embryonic day 12.5
(more )
Specimen
9I:
(close )
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Genetic Background:
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involves: C57BL/6J * CBA/J
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Age:
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embryonic day 12.5
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Sex:
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Not Specified
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Type:
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section
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Fixation:
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4% Paraformaldehyde
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Embedding:
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Paraffin
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| Structure |
Level |
Pattern |
Image |
Note |
| TS20: retina |
Present |
Regionally restricted |
9I
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Expression is in the temporal hemiretina.
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