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Gene Expression Data
Assay Details
Assay
Reference: J:203334 Masuda T, et al., Spatiotemporal patterns of the Huntingtin-interacting protein 1-related gene in the mouse head. Congenit Anom (Kyoto). 2013;53:141-48
Assay type: RNA in situ
MGI Accession ID: MGI:5607573
Gene symbol: Hip1r
Gene name: huntingtin interacting protein 1 related
Probe: Hip1r probe1
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Results
Specimen 1B: embryonic day 13.5 (more )
Structure Level Pattern Image Note
TS21: cortical plate Strong 1B
TS21: cerebral cortex Strong Regionally restricted 1B Expression is in layer I.
TS21: forebrain Present Regionally restricted 1B Expression is in the dentate gyrus.

Specimen 2B: embryonic day 15.5 (more )
Structure Level Pattern Image Note
TS23: cerebral cortex subventricular zone Strong 2B
TS23: hippocampus Strong 2B

Specimen 2C: embryonic day 15.5 (more )
Structure Level Pattern Image Note
TS23: cerebellum Weak 2C

Specimen 3B: embryonic day 17.5 (more )
Structure Level Pattern Image Note
TS25: main olfactory bulb Present 3B
TS25: nasopharynx epithelium Present 3B
TS25: olfactory epithelium Present 3B

Specimen 3C: embryonic day 17.5 (more )
Structure Level Pattern Image Note
TS25: caudate-putamen Strong 3C
TS25: cerebral cortex subventricular zone Strong 3C
TS25: cortical plate Strong 3C
TS25: cortical subplate Strong 3C
TS25: hippocampus Strong Regionally restricted 3C Expression is in regions CA1 and CA3.

Specimen 4B: postnatal week 12 (more )
Structure Level Pattern Image Note
TS28: cortical layer II Strong 4B
TS28: cortical layer III Strong 4B
TS28: cortical layer IV Strong 4B
TS28: cortical layer V Strong 4B
TS28: cortical layer VI Strong 4B
TS28: dentate gyrus Present 4B
TS28: hippocampus CA1 Present 4B
TS28: hippocampus CA2 Present 4B
TS28: hippocampus CA3 Present 4B

Specimen 4C: postnatal week 12 (more )
Structure Level Pattern Image Note
TS28: cerebellum Purkinje cell layer Strong 4C
TS28: cerebellum granule cell layer Strong 4C

Specimen 5A: embryonic day 17.5 (more )
Structure Level Pattern Image Note
TS25: Harderian gland Strong 5A
TS25: retina inner nuclear layer Strong 5A
TS25: retina outer nuclear layer Present 5A
TS25: lens Absent 5A

Specimen 5B: embryonic day 17.5 (more )
Structure Level Pattern Image Note
TS25: olfactory epithelium Present 5B
TS25: oral epithelium Present 5B
TS25: upper jaw incisor Present 5B
TS25: vibrissa Present 5B

Specimen 5C: embryonic day 17.5 (more )
Structure Level Pattern Image Note
TS25: olfactory epithelium Strong 5C
TS25: vomeronasal organ Strong 5C
TS25: nose Strong Regionally restricted 5C Expression is in the nasal glands.

Specimen 5D: embryonic day 17.5 (more )
Structure Level Pattern Image Note
TS25: submandibular gland Strong 5D
TS25: trigeminal ganglion Strong 5D

Specimen 5E: embryonic day 17.5 (more )
Structure Level Pattern Image Note
TS25: lower jaw molar Present 5E
TS25: upper jaw molar Present 5E
TS25: tongue epithelium Present Regionally restricted 5E Expression is in the dorsal surface.

Specimen Table 1 E13: embryonic day 13.5 (more )
Structure Level Pattern Image Note
TS21: cortical plate Strong
TS21: olfactory epithelium Strong
TS21: pons Strong
TS21: medulla oblongata Strong Regionally restricted Expression is in the ambiguous nucleus, vestibular nucleus, raphe magnus nucleus, prepositus hypoglossal nucelus, abducens, dorsal nucleus of the 10th nerve, and inferior olive.
TS21: forebrain Strong Regionally restricted Expression is in the lateral olfactory tract,the olfactory nerve layer, hippocampus, and dentate gyrus.
TS21: cerebral cortex Strong Regionally restricted Expression is in layer I.
TS21: olfactory cortex Strong Regionally restricted Expression is in the piriform cortex.
TS21: telencephalon Strong Regionally restricted Expression is in the anterior amygdaloid area and in the amygdaloid body.
TS21: midbrain Strong Regionally restricted Expression is in the red nucleus, superior and inferior colliculi, interstitial nucleus, medial longitudinal fasciculus, mesencephalic trigeminal nucleus of the 5th nerve, and nucleus of the 3rd nerve.
TS21: thalamus Moderate Regionally restricted Expression is in the lateral habenuclear nucleus and stria terminalis.
TS21: hypothalamus Moderate Regionally restricted Expression is in the anterior hypothalamic area and the paraventricular, dorsomedial, and ventromedial hypothalamic nuclei.
TS21: diencephalon Moderate Regionally restricted Expression is in the nigrostriatal pathway.
TS21: cerebellum Moderate
TS21: corpus striatum Weak Regionally restricted Expression is in the caudate putamen.

Specimen Table 1 E15: embryonic day 15.5 (more )
Structure Level Pattern Image Note
TS23: cerebral cortex subventricular zone Strong
TS23: cortical plate Strong
TS23: hippocampus Strong
TS23: main olfactory bulb olfactory nerve layer Strong
TS23: olfactory epithelium Strong
TS23: main olfactory bulb Strong Regionally restricted Strong in the glomerular layer, present in the mitral and granule cell layer, strong in the lateral olfactory tract.
TS23: forebrain Strong Regionally restricted Expression is in the dentate gyrus.
TS23: amygdala Moderate
TS23: caudate-putamen Moderate
TS23: cortical subplate Moderate
TS23: inferior colliculus Moderate
TS23: piriform cortex Moderate
TS23: pons Moderate
TS23: superior colliculus Moderate
TS23: cerebral cortex Moderate Regionally restricted Expression is in layer I.
TS23: medulla oblongata Moderate Regionally restricted Expression is in the medial lemniscus, ambiguous nucleus, vestibular nucleus, raphe magnus nucleus, prepositus hypoglossal nucelus, abducens, dorsal nucleus of the 10th nerve, and inferior olive.
TS23: thalamus Moderate Regionally restricted Expression is in the lateral and medial habenuclear nucleus and the stria terminalis.
TS23: hypothalamus Moderate Regionally restricted Expression is in the anterior hypothalamic area and the paraventricular, dorsomedial, and ventromedial hypothalamic nuclei.
TS23: midbrain Moderate Regionally restricted Expression is in the red nucleus, interstitial nucleus, medial longitudinal fasciculus, mesencephalic trigeminal nucleus of the 5th nerve, and nucleus of the 3rd nerve.
TS23: cerebellum Weak
TS23: cerebral cortex intermediate zone Weak
TS23: diencephalon Weak Regionally restricted Expression is in the nigrostriatal pathway.

Specimen Table 1 E17: embryonic day 17.5 (more )
Structure Level Pattern Image Note
TS25: caudate-putamen Strong
TS25: cerebral cortex subventricular zone Strong
TS25: cortical plate Strong
TS25: cortical subplate Strong
TS25: main olfactory bulb olfactory nerve layer Strong
TS25: olfactory epithelium Strong
TS25: main olfactory bulb Strong Regionally restricted Strong in the glomerular layer, present in the mitral and granule cell layer, strong in the lateral olfactory tract.
TS25: thalamus Strong Regionally restricted Expression is strong in the medial and weak in the lateral habenuclear nucleus, also present in the stria terminalis.
TS25: amygdala Moderate
TS25: dentate gyrus Moderate
TS25: hippocampus Moderate
TS25: inferior colliculus Moderate
TS25: piriform cortex Moderate
TS25: superior colliculus Moderate
TS25: hypothalamus Moderate Regionally restricted Expression is in the anterior hypothalamic area and the paraventricular, dorsomedial, and ventromedial hypothalamic nuclei.
TS25: medulla oblongata Moderate Regionally restricted Expression is in the medial lemniscus, vestibular nucleus, raphe magnus nucleus, and prepositus hypoglossal nucelus.
TS25: diencephalon Moderate Regionally restricted Expression is in the nigrostriatal pathway.
TS25: midbrain Moderate Regionally restricted Expression is in the red nucleus, interstitial nucleus, medial longitudinal fasciculus, mesencephalic trigeminal nucleus of the 5th nerve, and nucleus of the 3rd nerve.
TS25: pons Moderate Regionally restricted
TS25: cerebellum Weak
TS25: cerebral cortex intermediate zone Weak
TS25: cerebral cortex Weak Regionally restricted Expression is in layer I.

Specimen Table 1 Adult: postnatal adult (more )
Structure Level Pattern Image Note
TS28: abducens nucleus Strong
TS28: cerebellum Purkinje cell layer Strong
TS28: cerebellum granule cell layer Strong
TS28: cortical layer V Strong
TS28: dorsal motor nucleus of vagus nerve Strong
TS28: hippocampus Strong
TS28: hippocampus CA1 Strong
TS28: hippocampus CA3 Strong
TS28: medial habenular nucleus Strong
TS28: piriform cortex Strong
TS28: trigeminal V mesencephalic nucleus Strong
TS28: cortical layer II Moderate
TS28: cortical layer III Moderate
TS28: cortical layer IV Moderate
TS28: cortical layer VI Moderate
TS28: dentate gyrus Moderate
TS28: oculomotor nucleus Moderate
TS28: ventromedial hypothalamic nucleus Moderate
TS28: caudate-putamen Weak
TS28: dorsomedial hypothalamic nucleus Weak
TS28: facial nucleus Weak
TS28: hypothalamic nucleus Weak
TS28: lateral habenular nucleus Weak
TS28: paraventricular hypothalamic nucleus Weak
TS28: pons Weak
TS28: raphe magnus nucleus Weak
TS28: amygdala Weak Regionally restricted Expression is in the anterior amygdaloid area.
TS28: thalamus Weak Regionally restricted Absent in the stria terminalis.
TS28: diencephalon Weak Regionally restricted Expression is in the nigrostriatal pathway.
TS28: midbrain tegmentum Weak Regionally restricted Expression is in the medial longitudinal fasciculus.
TS28: medulla oblongata Weak Regionally restricted Expression is in the medial lemniscus and ambiguous nucleus.
TS28: cerebellum molecular layer Absent
TS28: cortical layer I Absent
TS28: inferior olivary nucleus Absent
TS28: nucleus of lateral olfactory tract Absent
TS28: red nucleus Absent


Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
05/21/2024
MGI 6.23
The Jackson Laboratory