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Gene Expression Data
Assay Details
Assay
Reference: J:166848 Akiyama M, et al., Tissue- and development-dependent expression of the small GTPase Arf6 in mice. Dev Dyn. 2010 Dec;239(12):3416-35
Assay type: RNA in situ
MGI Accession ID: MGI:5571038
Gene symbol: Arf6
Gene name: ARF GTPase 6
Probe: Arf6 cDNA2
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Results
Specimen 3A: embryonic day 13.5 (more )
Structure Level Pattern Image Note
TS21: stomach epithelium Strong 3A
TS21: stomach mesenchyme Present 3A

Specimen 3B: embryonic day 13.5; Arf6tm1Yaka/Arf6tm1Yaka (more )
Structure Level Pattern Image Note
TS21: stomach Absent 3B

Specimen 3C: embryonic day 15.5 (more )
Structure Level Pattern Image Note
TS23: stomach epithelium Strong 3C
TS23: stomach mesenchyme Absent 3C

Specimen 3E: postnatal day 0 (more )
Structure Level Pattern Image Note
TS27: stomach epithelium Strong Regionally restricted 3E Expressed in the second epithelial cell layer, but not in the surface keratinized layer.
TS27: stomach proventricular region Strong Regionally restricted 3E Expressed in the second epithelial cell layer, but not in the surface keratinized layer.

Specimen 3G: postnatal day 0 (more )
Structure Level Pattern Image Note
TS27: body of stomach Strong Regionally restricted 3G Expressed at the surface of the epithelium and the gastric pits.
TS27: stomach epithelium Strong Regionally restricted 3G Expressed at the surface of the epithelium and the gastric pits.

Specimen 3I: postnatal adult (more )
Structure Level Pattern Image Note
TS28: stomach epithelium Strong Regionally restricted 3I Expressed in the second epithelial cell layer, but not in the surface keratinized layer.
TS28: stomach proventricular region Strong Regionally restricted 3I Expressed in the second epithelial cell layer, but not in the surface keratinized layer.

Specimen 3K: postnatal adult (more )
Structure Level Pattern Image Note
TS28: body of stomach Strong Regionally restricted 3K Expressed at the surface of the epithelium and the gastric pits. The signal at the neck region of the pits was higher than that at the bottom region,
TS28: stomach epithelium Strong Regionally restricted 3K Expressed at the surface of the epithelium and the gastric pits. The signal at the neck region of the pits was higher than that at the bottom region,

Specimen 4A: embryonic day 13.5 (more )
Structure Level Pattern Image Note
TS21: intestine epithelium Strong Regionally restricted 4A Small intestine.
TS21: intestine mesenchyme Present Regionally restricted 4A Small intestine.
TS21: intestine muscularis Absent 4A Small intestine.

Specimen 4B: embryonic day 13.5; Arf6tm1Yaka/Arf6tm1Yaka (more )
Structure Level Pattern Image Note
TS21: intestine Absent 4B

Specimen 4C: embryonic day 15.5 (more )
Structure Level Pattern Image Note
TS23: intestine epithelium Strong Regionally restricted 4C Small intestine.
TS23: intestine mesenchyme Absent 4C Small intestine.
TS23: intestine muscularis Absent 4C Small intestine.

Specimen 4E: postnatal day 0 (more )
Structure Level Pattern Image Note
TS27: small intestine epithelium Strong 4E
TS27: small intestine crypt of lieberkuhn Present 4E
TS27: small intestine muscularis mucosa Absent 4E

Specimen 4G: postnatal adult (more )
Structure Level Pattern Image Note
TS28: small intestine crypt of lieberkuhn Strong 4G
TS28: small intestine epithelium Present 4G
TS28: small intestine muscularis mucosa Absent 4G

Specimen 4I: postnatal adult (more )
Structure Level Pattern Image Note
TS28: small intestine crypt of lieberkuhn Present Regionally restricted 4I Expressed in enterocytes at the surface, but not in the goblet cells and Paneth cells.
TS28: small intestine muscularis mucosa Absent 4I

Specimen 5B: embryonic day 15.5 (more )
Structure Level Pattern Image Note
TS23: aorta Present Regionally restricted 5B Expressed in the tunica media.

Specimen 5D: embryonic day 15.5 (more )
Structure Level Pattern Image Note
TS23: right ventricle endocardial lining Absent 5D

Specimen 5F: embryonic day 15.5 (more )
Structure Level Pattern Image Note
TS23: atrium cardiac muscle Present 5F Expressed in the developing myocardial cells in the trabecular and compact myocardium.
TS23: ventricle cardiac muscle Present 5F Expressed in the developing myocardial cells in the trabecular and compact myocardium.
TS23: visceral pericardium Absent 5F No expression in the mesothelium in epicardium.

Specimen 5I: postnatal day 0 (more )
Structure Level Pattern Image Note
TS27: ventricle cardiac muscle Present 5I
TS27: visceral serosal pericardium Absent 5I No expression in the mesothelium in epicardium.

Specimen 5L: postnatal adult (more )
Structure Level Pattern Image Note
TS28: heart Absent 5L
TS28: visceral serosal pericardium Absent 5L No expression in the mesothelium in epicardium.

Specimen 6A: embryonic day 13.5 (more )
Structure Level Pattern Image Note
TS21: pancreas Strong Regionally restricted 6A Expressed in the islet-like clumps of cells, which differentiate into the exocrine epithelial cells in acini or into the endocrine cells in the islets of Langerhans. Also expressed in the mesenchymal cells.

Specimen 6B: embryonic day 13.5; Arf6tm1Yaka/Arf6tm1Yaka (more )
Structure Level Pattern Image Note
TS21: pancreas Absent 6B

Specimen 6C: embryonic day 15.5 (more )
Structure Level Pattern Image Note
TS23: pancreas Strong Regionally restricted 6C Expressed in the islet-like clumps of cells, which differentiate into the exocrine epithelial cells in acini or into the endocrine cells in the islets of Langerhans. But not expressed in the mesenchymal cells.

Specimen 6E: postnatal day 0 (more )
Structure Level Pattern Image Note
TS27: pancreatic acinus Present 6E Expression present in acinar cells.
TS27: exocrine pancreas Present 6E
TS27: endocrine pancreas Present 6E Much lower expression lelvel.
TS27: islets of Langerhans Present 6E Much lower expression lelvel.

Specimen 6G: postnatal adult (more )
Structure Level Pattern Image Note
TS28: pancreatic acinus Present 6G Expression present in acinar cells.
TS28: exocrine pancreas Present 6G
TS28: endocrine pancreas Trace 6G Very low expression in the islets of Langerhans.
TS28: islets of Langerhans Trace 6G Very low expression in the islets of Langerhans.

Specimen 7A: embryonic day 13.5 (more )
Structure Level Pattern Image Note
TS21: lung epithelium Strong 7A Expressed in the surface epithelium of airway tubules. Expression was higher in bud epithelial cells.
TS21: lung mesenchyme Present 7A Expression was lower in surrounding mesenchymal cells.

Specimen 7B: embryonic day 13.5; Arf6tm1Yaka/Arf6tm1Yaka (more )
Structure Level Pattern Image Note
TS21: lung Absent 7B

Specimen 7C: embryonic day 15.5 (more )
Structure Level Pattern Image Note
TS23: lung epithelium Strong Regionally restricted 7C Expressed in the surface epithelium of airway tubules. Expression was higher in bud epithelial cells.
TS23: lung mesenchyme Present 7C Expression was lower in surrounding mesenchymal cells.

Specimen 7E: postnatal day 0 (more )
Structure Level Pattern Image Note
TS27: bronchus epithelium Present 7E Expressed in the surface epithelium of airway tubules.
TS27: lung Present Regionally restricted 7E Expressed in epithelial cells, but not in mesenchymal cells.
TS27: alveolus epithelium Weak 7E

Specimen 7G: postnatal adult (more )
Structure Level Pattern Image Note
TS28: bronchus epithelium Present 7G
TS28: alveolus epithelium Weak 7G
TS28: lung Present Regionally restricted 7G Expressed in epithelial cells, but not in mesenchymal cells.

Specimen 7I: postnatal adult (more )
Structure Level Pattern Image Note
TS28: bronchiole epithelium Strong 7I
TS28: alveolus epithelium Weak 7I
TS28: lung Present Regionally restricted 7I Expressed in epithelial cells, but not in mesenchymal cells.

Specimen 8A/B: embryonic day 11.5 (more )
Structure Level Pattern Image Note
TS19: liver Strong 8A , 8B Expressed in most of the immature hepatoblasts.

Specimen 8D/E: embryonic day 12.5 (more )
Structure Level Pattern Image Note
TS20: liver Present 8D , 8E The positive cell numbers and intensity of expression decreased with development progression.

Specimen 8G/H: embryonic day 13.5 (more )
Structure Level Pattern Image Note
TS21: liver Present 8G , 8H The positive cell numbers and intensity of expression decreased with development progression.

Specimen 8J/K: embryonic day 15.5 (more )
Structure Level Pattern Image Note
TS23: liver Present 8K , 8J The positive cell numbers and intensity of expression decreased with development progression.
TS23: liver vascular element Absent 8K Not detected in the endothelial cells of blood vessels.

Specimen 9A: embryonic day 13.5 (more )
Structure Level Pattern Image Note
TS21: renal vesicle Strong 9A
TS21: mesenchyme of metanephros Present Regionally restricted 9A Expressed in mesenchymal cells surrounding the renal vesicles.

Specimen 9B: embryonic day 13.5; Arf6tm1Yaka/Arf6tm1Yaka (more )
Structure Level Pattern Image Note
TS21: metanephros Absent 9B

Specimen 9C/E: embryonic day 15.5 (more )
Structure Level Pattern Image Note
TS23: renal corpuscle Strong Regionally restricted 9E , 9C Expressed in the epithelial cells.
TS23: renal vesicle Strong Regionally restricted 9E , 9C Expressed in the epithelial cells.
TS23: anlage of loop of Henle of cortical renal tubule Present 9C , 9E
TS23: comma-shaped body Present 9C , 9E
TS23: cortical early distal tubule Present 9C , 9E
TS23: cortical early proximal tubule Present 9C , 9E
TS23: collecting duct Weak 9C , 9E

Specimen 9G/I: postnatal day 0 (more )
Structure Level Pattern Image Note
TS27: nephron Present 9G , 9I
TS27: renal proximal tubule Present 9G , 9I
TS27: loop of Henle Weak 9I , 9G
TS27: renal distal tubule Weak 9I , 9G
TS27: collecting duct Absent 9G , 9I

Specimen 10A: embryonic day 13.5 (more )
Structure Level Pattern Image Note
TS21: dorsal mesogastrium Weak Regionally restricted 10A Expressed throughout the developing spleen.

Specimen 10B: embryonic day 13.5; Arf6tm1Yaka/Arf6tm1Yaka (more )
Structure Level Pattern Image Note
TS21: dorsal mesogastrium Absent 10B

Specimen 10C: embryonic day 15.5 (more )
Structure Level Pattern Image Note
TS23: spleen primordium Present Widespread 10C Expressed in most but not all cells in the spleen.

Specimen 10E/G: postnatal day 0 (more )
Structure Level Pattern Image Note
TS27: spleen Present Widespread 10G , 10E Expressed in most but not all cells in the spleen.
TS27: spleen trabeculum Weak 10G
TS27: spleen capsule Absent 10G

Specimen 10I/K: postnatal adult (more )
Structure Level Pattern Image Note
TS28: spleen red pulp Present Widespread 10I , 10K Expressed in most cells.
TS28: spleen white pulp Present Widespread 10I , 10K Expressed in most cells.
TS28: spleen capsule Absent 10I , 10K

Specimen 11A: embryonic day 13.5 (more )
Structure Level Pattern Image Note
TS21: thymus primordium Strong Regionally restricted 11A Expressed in lymphoid (but not all cells) and/or mesenchymal cells. Thymic epithelial cells were also positive. Not expressed in the mesenchymal capsule and capillary endothelium.

Specimen 11B: embryonic day 13.5; Arf6tm1Yaka/Arf6tm1Yaka (more )
Structure Level Pattern Image Note
TS21: thymus primordium Absent 11B

Specimen 11C: embryonic day 15.5 (more )
Structure Level Pattern Image Note
TS23: thymus primordium Strong Regionally restricted 11C Expressed in lymphoid (but not all cells) and/or mesenchymal cells. Thymic epithelial cells were also positive. Not expressed in the mesenchymal capsule and capillary endothelium.

Specimen 11E/G: postnatal day 0 (more )
Structure Level Pattern Image Note
TS27: thymus cortex Present 11G , 11E
TS27: thymus medullary core Present 11G , 11E
TS27: thymus epithelium Strong 11G
TS27: thymus thin fibrous capsule Absent 11G
TS27: thymus Present Regionally restricted 11E Expressed in cortex, medulla and subcapsular epithelium. Not expressed in capsule and trabecular.

Specimen 11I/K/M: postnatal adult (more )
Structure Level Pattern Image Note
TS28: thymus cortex Present Clusters 11M , 11I , 11K Expressed in lymphoid cell clusters.
TS28: thymus medullary core Present Clusters 11M , 11I , 11K Expressed in lymphoid cell clusters.
TS28: thymus epithelium Strong 11K Subcapsular epithelium.

Specimen 12A: embryonic day 15.5 (more )
Structure Level Pattern Image Note
TS23: hemolymphoid system Weak Regionally restricted 12A Expressed throughout the developing lymph node.

Specimen 12C: postnatal day 0 (more )
Structure Level Pattern Image Note
TS27: lymph node Present 12C There are different populations of the cells with a high and low level expression.

Specimen 12E/G: postnatal adult (more )
Structure Level Pattern Image Note
TS28: lymph node cortex Strong Widespread 12E , 12G The germinal center of the cortical lymphatic nodule showed the highest expression.
TS28: lymph node medulla Weak Widespread 12E , 12G
TS28: lymph node capsule Absent 12G

Specimen 13A/B: embryonic day 13.5 (more )
Structure Cell Type Level Pattern Image Note
TS21: primary sex cord Strong 13A , 13B
TS21: germ cell of testis Strong 13B Expression was higher in germ cells than in Sertoli cells.
TS21: Sertoli cell Sertoli cell Weak 13B Expression was higher in germ cells than in Sertoli cells.

Specimen 13C: embryonic day 13.5; Arf6tm1Yaka/Arf6tm1Yaka (more )
Structure Level Pattern Image Note
TS21: testis Absent 13C

Specimen 13D/E: embryonic day 15.5 (more )
Structure Level Pattern Image Note
TS23: testis Strong Regionally restricted 13E , 13D Expressed in the testicular cord.
TS23: germ cell of testis Strong 13E Expression was higher in germ cells than in Sertoli cells.

Specimen 13G/H: postnatal day 0 (more )
Structure Cell Type Level Pattern Image Note
TS27: germ cell of testis Strong 13H , 13G Expression was higher in germ cells than in Sertoli cells.
TS27: Sertoli cell Sertoli cell Weak 13H , 13G Expression was higher in germ cells than in Sertoli cells.

Specimen 13J/K: postnatal adult (more )
Structure Cell Type Level Pattern Image Note
TS28: spermatocyte Strong 13K , 13J
TS28: Leydig cell Leydig cell Strong 13J , 13K
TS28: spermatogonium Weak 13K
TS28: spermatid Absent 13K
TS28: spermatozoon Absent 13K

Specimen 13M: embryonic day 13.5 (more )
Structure Level Pattern Image Note
TS21: ovary Trace 13M Very weak.

Specimen 13N: embryonic day 13.5; Arf6tm1Yaka/Arf6tm1Yaka (more )
Structure Level Pattern Image Note
TS21: ovary Absent 13N

Specimen 13O: embryonic day 15.5 (more )
Structure Level Pattern Image Note
TS23: ovary Trace 13O Very weak.

Specimen 13Q: postnatal day 0 (more )
Structure Level Pattern Image Note
TS27: ovary Trace 13Q Very weak.

Specimen 13S/T: postnatal adult (more )
Structure Level Pattern Image Note
TS28: ovary Present Regionally restricted 13S , 13T Expressed in granulosa cells.
TS28: cumulus oophorus Present 13T
TS28: corpus luteum Absent 13S
TS28: oocyte Absent 13S

Specimen 14A: embryonic day 13.5 (more )
Structure Level Pattern Image Note
TS21: skeletal muscle Strong 14A

Specimen 14B: embryonic day 13.5; Arf6tm1Yaka/Arf6tm1Yaka (more )
Structure Level Pattern Image Note
TS21: skeletal muscle Absent 14B

Specimen 14C: embryonic day 15.5 (more )
Structure Level Pattern Image Note
TS23: skeletal muscle Moderate 14C

Specimen 14E: postnatal day 0 (more )
Structure Level Pattern Image Note
TS27: skeletal muscle Absent 14E

Specimen 14G: postnatal adult (more )
Structure Level Pattern Image Note
TS28: skeletal muscle Absent 14G

Specimen 15A/B: embryonic day 13.5 (more )
Structure Level Pattern Image Note
TS21: cartilage Present 15A , 15B
TS21: embryo mesenchyme Present Regionally restricted 15A , 15B Expressed in perichondrium.

Specimen 15C: embryonic day 13.5; Arf6tm1Yaka/Arf6tm1Yaka (more )
Structure Level Pattern Image Note
TS21: cartilage Absent 15C

Specimen 15D/E: embryonic day 15.5 (more )
Structure Level Pattern Image Note
TS23: limb skeleton Strong Regionally restricted 15D , 15E Expressed in the diaphysis, but not in the epiphysis. Expressed in both osteoblasts and myeloid cells. No expression in osteocytes.

Specimen 15G/H: postnatal day 0 (more )
Structure Level Pattern Image Note
TS27: long bone diaphysis Strong Regionally restricted 15G , 15H Expressed in both osteoblasts and myeloid cells. Low expression in the osteoclasts. No expression in osteocytes.
TS27: long bone epiphysis Absent 15G

Specimen 15J: postnatal adult (more )
Structure Level Pattern Image Note
TS28: bone tissue Absent 15J
TS28: limb long bone Absent 15J

Specimen 15K: postnatal adult (more )
Structure Level Pattern Image Note
TS28: bone marrow Strong 15K Expressed in megakaryocytes and myeloid cells. Also expressed in fat cells.

Specimen 15M: postnatal day 0 (more )
Structure Level Pattern Image Note
TS27: cranium Present 15M Expressed in osteocytes.

Specimen 16A: embryonic day 13.5 (more )
Structure Level Pattern Image Note
TS21: salivary gland Strong 16A Expressed in both the epithelium terminal clusters and epithelial stalks. Weak expression in the surrounding mesenchymal cells.

Specimen 16B: embryonic day 13.5; Arf6tm1Yaka/Arf6tm1Yaka (more )
Structure Level Pattern Image Note
TS21: salivary gland Absent 16B

Specimen 16C: embryonic day 15.5 (more )
Structure Level Pattern Image Note
TS23: salivary gland Strong 16C Expressed in both the epithelium terminal clusters and epithelial stalks. Weak expression in the surrounding mesenchymal cells.

Specimen 16E: postnatal day 0 (more )
Structure Level Pattern Image Note
TS27: salivary gland Present 16E Expressed in both the epithelium terminal clusters and epithelial stalks with a reduced intensity.

Specimen 16G: postnatal adult (more )
Structure Level Pattern Image Note
TS28: salivary gland Present 16G Expressed in the mucous and serous cells, but not in the myoepithelial cells.

Specimen not shown: embryonic day 15.5 (more )
Note: Summarized in Table 1.
Structure Level Pattern Image Note
TS23: interventricular septum Weak

Specimen not shown: postnatal day 0 (more )
Note: Summarized in Table 1.
Structure Level Pattern Image Note
TS27: body of stomach Strong Regionally restricted Expressed in surface epithelium.
TS27: stomach submucosa Absent
TS27: ventricle endocardial lining Absent
TS27: visceral serosal pericardium Absent
TS27: aorta Weak Regionally restricted Expressed in the tunica media.
TS27: interventricular septum Weak


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last database update
03/24/2026
MGI 6.24
The Jackson Laboratory