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Gene Expression Data
Assay Details
Assay
Reference: J:171409 GUDMAP Consortium, GUDMAP: the GenitoUrinary Development Molecular Anatomy Project. www.gudmap.org. 2004;
Assay type: RNA in situ
MGI Accession ID: MGI:5542879
Gene symbol: Cdh6
Gene name: cadherin 6
Probe: RIKEN clone 6330501C24 subclone
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Results
Specimen GUDMAP:11368: embryonic day 15.5 (more )
Note: Labeling was visualized using BM purple.
Structure Level Pattern Image Note
TS23: renal pelvis Absent GUDMAP:11368
TS23: collecting duct Absent GUDMAP:11368
TS23: ureteric trunk Absent GUDMAP:11368
TS23: renal interstitium Absent GUDMAP:11368
TS23: ureter Absent GUDMAP:11368
TS23: maturing renal corpuscle Absent GUDMAP:11368
TS23: capillary loop renal corpuscle Absent GUDMAP:11368
TS23: cortical collecting duct Absent GUDMAP:11368
TS23: renal cortical interstitium Absent GUDMAP:11368
TS23: nephrogenic interstitium Absent GUDMAP:11368
TS23: cap mesenchyme Absent GUDMAP:11368
TS23: ureteric tip Absent GUDMAP:11368
TS23: ureteric tree terminal branch excluding tip itself Absent GUDMAP:11368
TS23: metanephros Present GUDMAP:11368
TS23: nephrogenic zone Absent GUDMAP:11368
TS23: renal cortex Present GUDMAP:11368
TS23: s-shaped body Present GUDMAP:11368
TS23: comma-shaped body Present GUDMAP:11368
TS23: renal vesicle Present GUDMAP:11368
TS23: cortical renal tubule Present GUDMAP:11368
TS23: early tubule Present GUDMAP:11368
TS23: renal medulla Present GUDMAP:11368
TS23: renal connecting tubule Absent GUDMAP:11368
TS23: cortical early distal tubule Absent GUDMAP:11368
TS23: cortical early proximal tubule Present Regionally restricted GUDMAP:11368 graded expression; Strong expression in subset of early proximal tubule adjacent to immature loop of Henle possible representing early S3 segment. Weak expression in a different subset of early proximal tubules of maturing nephrons. Expression also in at least a portion of early proximal tubules of capillary loop stage nephrons.
TS23: anlage of loop of Henle of cortical renal tubule Present GUDMAP:11368
TS23: immature loop of Henle Present Regionally restricted GUDMAP:11368 Expression restricted to subset of immature loop of Henle within the renal medulla.
TS23: renal cortical vasculature Absent GUDMAP:11368
TS23: medullary collecting duct Absent GUDMAP:11368
TS23: renal medullary interstitium Absent GUDMAP:11368
TS23: renal medullary vasculature Absent GUDMAP:11368
TS23: renal capsule Absent GUDMAP:11368
TS23: late tubule Present GUDMAP:11368
TS23: maturing nephron Present GUDMAP:11368
TS23: developing capillary loop stage nephron group Present GUDMAP:11368
TS23: pretubular aggregate Absent GUDMAP:11368 Possible weak expression in larger aggregates closer to renal vesicle stage.
TS23: renal connecting tubule of s-shaped body Absent GUDMAP:11368
TS23: distal segment of s-shaped body Absent GUDMAP:11368
TS23: medial segment of s-shaped body Present GUDMAP:11368
TS23: proximal segment of s-shaped body Absent GUDMAP:11368
TS23: early nephron Present GUDMAP:11368
TS23: upper limb of comma-shaped body Present GUDMAP:11368
TS23: lower limb of comma-shaped body Present Regionally restricted GUDMAP:11368 Expression detected in lower limb of comma-shaped body closest to the upper limb.
TS23: distal renal vesicle Present GUDMAP:11368
TS23: proximal renal vesicle Present GUDMAP:11368
TS23: cortical renal tubule of capillary loop nephron group Present GUDMAP:11368
TS23: cortical renal tubule of maturing nephron group Present GUDMAP:11368
TS23: early proximal tubule of maturing nephron Present GUDMAP:11368
TS23: early proximal tubule of capillary loop nephron Present GUDMAP:11368
TS23: renal connecting segment of renal vesicle Absent GUDMAP:11368
TS23: renal connecting segment of comma-shaped body Absent GUDMAP:11368

Specimen GUDMAP:11382: postnatal adult (more )
Note: This animal was sexually mature. Labeling was visualized using BM purple.
Structure Level Pattern Image Note
TS28: metanephros Absent GUDMAP:11382

Specimen GUDMAP:11384: embryonic day 15.5 (more )
Note: Labeling was visualized using BM purple.
Structure Level Pattern Image Note
TS23: ureter Absent GUDMAP:11384


Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/25/2025
MGI 6.24
The Jackson Laboratory